cluster # 1230

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Apis mellifera
cluster # 1230 cluster # 1230 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1230#0 length = 339 sequences # 1

consensus_1230#1 length = 286 sequences # 2

consensusID : consensus_1230#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [TCTATCTCTATGACTGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTTATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATTTGCTGTGTGATTTTCATGATCAGATCGCCTCTGGTCTGAGGGAGAAGGTAATGATCGAGATGAATCTGTTTTTGATTGTGCTGCTGGACTCTGTGCTCTTTCACTACTGGATTCTCTAGACGAATTGTTGTTGTTGCTTTCCTTTGTCTTCTCAATAGGACTTGGGGTAGTCTTGAAAGACCCTCACACAGCATAGACCTTGCCGAGGTGCGTAGATAT]

[+] EMBL BI511288             [TCTATCTCTATGACTGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTTATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATTTGCTGTGTGATTTTCATGATCAGATCGCCTCTGGTCTGAGGGAGAAGGTAATGATCGAGATGAATCTGTTTTTGATTGTGCTGCTGGACTCTGTGCTCTTTCACTACTGGATTCTCTAGACGAATTGTTGTTGTTGCTTTCCTTTGTCTTCTCAATAGGACTTGGGGTAGTCTTGAAAGACCCTCACACAGCATAGACCTTGCCGAGGTGCGTAGATAT]




>consensus_1230#0
TCTATCTCTATGACTGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTT
ATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATT
TGCTGTGTGATTTTCATGATCAGATCGCCTCTGGTCTGAGGGAGAAGGTAATGATCGAGA
TGAATCTGTTTTTGATTGTGCTGCTGGACTCTGTGCTCTTTCACTACTGGATTCTCTAGA
CGAATTGTTGTTGTTGCTTTCCTTTGTCTTCTCAATAGGACTTGGGGTAGTCTTGAAAGA
CCCTCACACAGCATAGACCTTGCCGAGGTGCGTAGATAT

consensusID : consensus_1230#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 286
fasta sequence

                              [TGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTTATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATTTGCTGTGTGATTTTCATGATCAGATCGCCTGTAAAACGATTACGTTCTGCAGGATATACCACACAGATTCGTATTATTATTTTGCATGTAAGGGAAACATTATGTGGTAAGTATGTTGCAAGTTTGTTTGTTTGTTTTTTTCTCGTATAAAGTTCAAAGAAAAAAAAAAAATTAAATTCA]

[+] EMBL BI507587             [TGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTTATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATTTGCTGTGTGATTTTCATGATCAGATCGCCTGTAAAACGATTACGTTCTGCAGGATATACCACACAGATTCGTATTATTATTTTCCATGTAAGGGAAACATTATGTGGTAAGTATGTTGCAAGTTTGTTTGTTTGTTTTTTTCTCGTATAAAGTTCAAAGAAAAAAAAAAAA         ]
[+] EMBL BI509256             [                                                CACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATTTGCTGTGTGATTTTCATGATCAGATCGCCTGTAAAACGATTACGTTCTGCAGGATATACCACACAGATTCGTATTATTATTTTGCATGTAAGGGAAACATTATGTGGTAAGTATGTTGCAAGTTTGTTTGTTTGTTTTTTTCTCGTATAAAGTTCAAAGAAATATATTAATTTAAATTCA]




>consensus_1230#1
TGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTTATCACTCATGTGTC
TACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATTTGCTGTGTGATTTT
CATGATCAGATCGCCTGTAAAACGATTACGTTCTGCAGGATATACCACACAGATTCGTAT
TATTATTTTGCATGTAAGGGAAACATTATGTGGTAAGTATGTTGCAAGTTTGTTTGTTTG
TTTTTTTCTCGTATAAAGTTCAAAGAAAAAAAAAAAATTAAATTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1230#0      TCTATCTCTATGACTGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTT 60
consensus_1230#1      --------------TGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTT 46
                                    **********************************************

consensus_1230#0      ATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATT 120
consensus_1230#1      ATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATT 106
                      ************************************************************

consensus_1230#0      TGCTGTGTGATTTTCATGATCAGATCGCCTCTGGTCTGAGGGAGAAGGTAATGATCGAGA 180
consensus_1230#1      TGCTGTGTGATTTTCATGATCAGATCGCCTGTAA----AACGATTACGTTCTG--CAGGA 160
                      ****************************** *      *  **  * **  **  *  **

consensus_1230#0      TGAATCTGTTTTTGATTGTGCTGCTGGACTCTGTGCTCTTTCACTACTGGATTCTCTAGA 240
consensus_1230#1      TATA-CCACACAGATTCGTATTATT--ATTTTGCATGTAAGGGAAACATTATGTGGTAAG 217
                      *  * *         * **  *  *  * * **            **   **    **  

consensus_1230#0      CGAATTGTTGTTGTTGCTTTCCTTTGTCTTCTCA-ATAGGACTTGGGGTAGTCTTGAAAG 299
consensus_1230#1      TATGTTGCAAGTTTGTTTGTTTGTTTTTTTCTCGTATAAAGTTCAAAGAAAA--AAAAAA 275
                          ***    * *   * *   ** * *****  ***    *    * *      *** 

consensus_1230#0      ACCCTCACACAGCATAGACCTTGCCGAGGTGCGTAGATAT 339
consensus_1230#1      AATTAAATTCA----------------------------- 286
                      *     *  **

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)