These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [CGCGAAAAGTACGCGAGACTTGGGCAGTGACATCAATCAGGAGGAATATAGTCAACGTAGACGTCTATCTACTCCAAGCGACAGTTCTAGTCCTCCTAGAACAATGAGACTTTTTAAATCTACAGGTACATTGACTAGAGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAAAAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAATAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAACTACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTTACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGCCGTTACAATTTGGGTATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGNTGAAAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAG] [+] EMBL BI507886 [CGCGAAAAGTACGCGAGACTTGGGCAGTGACATCAATCAGGAGGAATATAGTCAACGTAGACGTCTATCTACTCCAAGCGACAGTTCTAGTCCTCCTAGAACAATGAGACTTTTTAAATCTACAGGTACATTGACTAGAGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAAAAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAATAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAACTACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTTACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGCCGTTACAATTTGGGTATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGNTGAAAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAG] consensusID : consensus_1243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [AGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAAAAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAATAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAACTACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTTACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGAAATAAACGAGATGATCATACCTGTTCAGGACATGATGTTATGAATTCCAGCCGTTACAATTTGGGTATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGGTGAAAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAGAGATCACAGAGATCTGTTGTAT] [+] EMBL BI514407 [AGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAAAAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAATAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAACTACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTTACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGAAATAAACGAGATGATCATACCTGTTCAGGACATGATGTTATGAATTCCAGCCGTTACAATTTGGGTATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGGTGAAAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAGAGATCACAGAGATCTGTTGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1243#0 CGCGAAAAGTACGCGAGACTTGGGCAGTGACATCAATCAGGAGGAATATAGTCAACGTAG 60 consensus_1243#1 ------------------------------------------------------------ consensus_1243#0 ACGTCTATCTACTCCAAGCGACAGTTCTAGTCCTCCTAGAACAATGAGACTTTTTAAATC 120 consensus_1243#1 ------------------------------------------------------------ consensus_1243#0 TACAGGTACATTGACTAGAGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAA 180 consensus_1243#1 ------------------AGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAA 42 ****************************************** consensus_1243#0 AAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAA 240 consensus_1243#1 AAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAA 102 ************************************************************ consensus_1243#0 TAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAAC 300 consensus_1243#1 TAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAAC 162 ************************************************************ consensus_1243#0 TACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTT 360 consensus_1243#1 TACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTT 222 ************************************************************ consensus_1243#0 ACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAG------ 414 consensus_1243#1 ACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGAAATAA 282 ****************************************************** consensus_1243#0 ---------------------------------------------CCGTTACAATTTGGG 429 consensus_1243#1 ACGAGATGATCATACCTGTTCAGGACATGATGTTATGAATTCCAGCCGTTACAATTTGGG 342 *************** consensus_1243#0 TATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGNTGA 489 consensus_1243#1 TATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGGTGA 402 ******************************************************** *** consensus_1243#0 AAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAG----------------- 532 consensus_1243#1 AAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAGAGATCACAGAGATCTGT 462 ******************************************* consensus_1243#0 ----- consensus_1243#1 TGTAT 467 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |