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Apis mellifera
cluster # 1243 cluster # 1243       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1243#0 length = 532 sequences # 1  
consensus_1243#1 length = 467 sequences # 1  

consensusID : consensus_1243#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence
                              [CGCGAAAAGTACGCGAGACTTGGGCAGTGACATCAATCAGGAGGAATATAGTCAACGTAGACGTCTATCTACTCCAAGCGACAGTTCTAGTCCTCCTAGAACAATGAGACTTTTTAAATCTACAGGTACATTGACTAGAGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAAAAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAATAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAACTACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTTACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGCCGTTACAATTTGGGTATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGNTGAAAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAG]

[+] EMBL BI507886             [CGCGAAAAGTACGCGAGACTTGGGCAGTGACATCAATCAGGAGGAATATAGTCAACGTAGACGTCTATCTACTCCAAGCGACAGTTCTAGTCCTCCTAGAACAATGAGACTTTTTAAATCTACAGGTACATTGACTAGAGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAAAAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAATAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAACTACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTTACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGCCGTTACAATTTGGGTATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGNTGAAAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAG]


>consensus_1243#0 CGCGAAAAGTACGCGAGACTTGGGCAGTGACATCAATCAGGAGGAATATAGTCAACGTAG ACGTCTATCTACTCCAAGCGACAGTTCTAGTCCTCCTAGAACAATGAGACTTTTTAAATC TACAGGTACATTGACTAGAGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAA AAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAA TAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAAC TACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTT ACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGCCGTTA CAATTTGGGTATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTC TTCCGNTGAAAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAG



consensusID : consensus_1243#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence
                              [AGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAAAAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAATAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAACTACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTTACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGAAATAAACGAGATGATCATACCTGTTCAGGACATGATGTTATGAATTCCAGCCGTTACAATTTGGGTATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGGTGAAAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAGAGATCACAGAGATCTGTTGTAT]

[+] EMBL BI514407             [AGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAAAAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAATAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAACTACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTTACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGAAATAAACGAGATGATCATACCTGTTCAGGACATGATGTTATGAATTCCAGCCGTTACAATTTGGGTATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGGTGAAAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAGAGATCACAGAGATCTGTTGTAT]


>consensus_1243#1 AGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAAAAAAAATCAAGGACAGGA AGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAATAAATCGAATATCAAAAT AATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAACTACTGGAACTGATGAAGA AGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTTACGTTTTTTTGGGGACAC CGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGAAATAAACGAGATGATCATACCTG TTCAGGACATGATGTTATGAATTCCAGCCGTTACAATTTGGGTATTCTATCAACATCTCG GAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGGTGAAAGTACAACAGGAGATAG CAGTCAACAAAGTCAGAATTCTCAGAGATCACAGAGATCTGTTGTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1243#0      CGCGAAAAGTACGCGAGACTTGGGCAGTGACATCAATCAGGAGGAATATAGTCAACGTAG 60
consensus_1243#1      ------------------------------------------------------------
                                                                                  

consensus_1243#0      ACGTCTATCTACTCCAAGCGACAGTTCTAGTCCTCCTAGAACAATGAGACTTTTTAAATC 120
consensus_1243#1      ------------------------------------------------------------
                                                                                  

consensus_1243#0      TACAGGTACATTGACTAGAGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAA 180
consensus_1243#1      ------------------AGAAGAGGAATCCTTTTGCGAATCAAATAACACTCTCACTAA 42
                                        ******************************************

consensus_1243#0      AAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAA 240
consensus_1243#1      AAAAAATCAAGGACAGGAAGTTGAGAGAAAGGGTTGGTTTAAATCTCTATCTAGGAAGAA 102
                      ************************************************************

consensus_1243#0      TAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAAC 300
consensus_1243#1      TAAATCGAATATCAAAATAATGGATAAGAAACCTAGAATACCAGGAAGTGAAATTTTAAC 162
                      ************************************************************

consensus_1243#0      TACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTT 360
consensus_1243#1      TACTGGAACTGATGAAGAAGCTTCGTCCGTACCTGAACGAGTTTTTGTACAAAAGAATTT 222
                      ************************************************************

consensus_1243#0      ACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAG------ 414
consensus_1243#1      ACGTTTTTTTGGGGACACCGATCAGGAATCAGTTTCATCTAATAGAGATCGCAGAAATAA 282
                      ******************************************************      

consensus_1243#0      ---------------------------------------------CCGTTACAATTTGGG 429
consensus_1243#1      ACGAGATGATCATACCTGTTCAGGACATGATGTTATGAATTCCAGCCGTTACAATTTGGG 342
                                                                   ***************

consensus_1243#0      TATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGNTGA 489
consensus_1243#1      TATTCTATCAACATCTCGGAAACCATCGAGACTTACTGAAAGTGCATTGTCTTCCGGTGA 402
                      ******************************************************** ***

consensus_1243#0      AAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAG----------------- 532
consensus_1243#1      AAGTACAACAGGAGATAGCAGTCAACAAAGTCAGAATTCTCAGAGATCACAGAGATCTGT 462
                      *******************************************                 

consensus_1243#0      -----
consensus_1243#1      TGTAT 467
                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)