These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [ATCTTAAATCATATTATTATTATCATGATCATATATTTATTTATCTATATTACTTTATATTAGTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGGGAAGAAATGTATGAAAATTTAACAAAATTAGGTTTATCTTGTACATTGATATTAGATTCTGCAATGGGATATGTCATGGAACAAGTTGATATGGTCATGGTAGGAGCAGAAGGGGTTGCNGAAAGTGGAGGTGTTATTAACAAGNNNGGCACATATACAATGGCAATGTGTGCTAAAGAGNTNANGAAACCATTTTATGTCTTAACAGAGAGTTTCAAATTTTCAAGAATATATCCCTTAAATCAAGTAGATCTTCCAAATGAGTTTAAATATACAGCAAGTA] [+] EMBL BI507884 [ATCTTAAATCATATTATTATTATCATGATCATATATTTATTTATCTATATTACTTTATATTAGTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGGGAAGAAATGTATGAAAATTTAACAAAATTAGGTTTATCTTGTACATTGATATTAGATTCTGCAATGGGATATGTCATGGAACAAGTTGATATGGTCATGGTAGGAGCAGAAGGGGTTGCNGAAAGTGGAGGTGTTATTAACAAGNNNGGCACATATACAATGGCAATGTGTGCTAAAGAGNTNANGAAACCATTTTATGTCTTAACAGAGAGTTTCAAATTTTCAAGAATATATCCCTTAAATCAAGTAGATCTTCCAAATGAGTTTAAATATACAGCAAGTA] consensusID : consensus_1244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [TCTGTCAATACTTTAATGATATTATCAAAGATGAAAAAGATGTTTCTGCTGGAATGGCTGCTATACGTACACTATTAAAAGTTTTGGAGTATTCAAAGTCTGAAACGGTTCAAGAACTCAGGTACTGTTTACAGAATGCAATAGATGCAATGAGATCTACTGAAAATCCTGTAACTGCCATTGCATCTGGAAGTGAATTATTTCTTCGTTTTATAACTTTGGCTACATTAGATACTCCTTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGATTCTGCAATGGGATATGTCATGGAACAA] [+] EMBL BI508947 [TCTGTCAATACTTTAATGATATTATCAAAGATGAAAAAGATGTTTCTGCTGGAATGGCTGCTATACGTACACTATTAAAAGTTTTGGAGTATTCAAAGTCTGAAACGGTTCAAGAACTCAGGTACTGTTTACAGAATGCAATAGATGCAATGAGATCTACTGAAAATCCTGTAACTGCCATTGCATCTGGAAGTGAATTATTTCTTCGTTTTATAACTTTGGCTACATTAGATACTCCTTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGATTCTGCAATGGGATATGTCATGGAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1244#0 ------------------------------------------------------------ consensus_1244#1 TCTGTCAATACTTTAATGATATTATCAAAGATGAAAAAGATGTTTCTGCTGGAATGGCTG 60 consensus_1244#0 ------------------------------------------------------------ consensus_1244#1 CTATACGTACACTATTAAAAGTTTTGGAGTATTCAAAGTCTGAAACGGTTCAAGAACTCA 120 consensus_1244#0 --------------------------------------ATCTTAAATCATATTATTATTA 22 consensus_1244#1 GGTACTGTTTACAGAATGCAATAGATGCAATGAGATCTACTGAAAATCCTGTAACTGCCA 180 * ***** * * * * * consensus_1244#0 TCATGATCATATAT---TTATTTATCTATATTA---CTTT----ATATTAG--------T 64 consensus_1244#1 TTGCATCTGGAAGTGAATTATTTCTTCGTTTTATAACTTTGGCTACATTAGATACTCCTT 240 * * * ****** * * *** **** * ***** * consensus_1244#0 CATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAG 124 consensus_1244#1 CATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAG 300 ************************************************************ consensus_1244#0 TAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAA 184 consensus_1244#1 TAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAA 360 ************************************************************ consensus_1244#0 TTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTT 244 consensus_1244#1 TTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTT 420 ************************************************************ consensus_1244#0 TTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCA 304 consensus_1244#1 TTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCA 480 ************************************************************ consensus_1244#0 ATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCA 364 consensus_1244#1 ATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCA 540 ************************************************************ consensus_1244#0 GATAATAGTGGGGAA-GAAATGTATGAAAATTTAACAAAATTAGGTTTATCTTGTACATT 423 consensus_1244#1 GATAATAGTGGATTCTGCAATG---GGATATGTCATGGAACAA----------------- 580 *********** * **** * * ** * * ** * consensus_1244#0 GATATTAGATTCTGCAATGGGATATGTCATGGAACAAGTTGATATGGTCATGGTAGGAGC 483 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 AGAAGGGGTTGCNGAAAGTGGAGGTGTTATTAACAAGNNNGGCACATATACAATGGCAAT 543 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 GTGTGCTAAAGAGNTNANGAAACCATTTTATGTCTTAACAGAGAGTTTCAAATTTTCAAG 603 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 AATATATCCCTTAAATCAAGTAGATCTTCCAAATGAGTTTAAATATACAGCAAGTA 659 consensus_1244#1 -------------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |