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Apis mellifera
cluster # 1244 cluster # 1244       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1244#0 length = 659 sequences # 1  
consensus_1244#1 length = 580 sequences # 1  

consensusID : consensus_1244#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence
                              [ATCTTAAATCATATTATTATTATCATGATCATATATTTATTTATCTATATTACTTTATATTAGTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGGGAAGAAATGTATGAAAATTTAACAAAATTAGGTTTATCTTGTACATTGATATTAGATTCTGCAATGGGATATGTCATGGAACAAGTTGATATGGTCATGGTAGGAGCAGAAGGGGTTGCNGAAAGTGGAGGTGTTATTAACAAGNNNGGCACATATACAATGGCAATGTGTGCTAAAGAGNTNANGAAACCATTTTATGTCTTAACAGAGAGTTTCAAATTTTCAAGAATATATCCCTTAAATCAAGTAGATCTTCCAAATGAGTTTAAATATACAGCAAGTA]

[+] EMBL BI507884             [ATCTTAAATCATATTATTATTATCATGATCATATATTTATTTATCTATATTACTTTATATTAGTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGGGAAGAAATGTATGAAAATTTAACAAAATTAGGTTTATCTTGTACATTGATATTAGATTCTGCAATGGGATATGTCATGGAACAAGTTGATATGGTCATGGTAGGAGCAGAAGGGGTTGCNGAAAGTGGAGGTGTTATTAACAAGNNNGGCACATATACAATGGCAATGTGTGCTAAAGAGNTNANGAAACCATTTTATGTCTTAACAGAGAGTTTCAAATTTTCAAGAATATATCCCTTAAATCAAGTAGATCTTCCAAATGAGTTTAAATATACAGCAAGTA]


>consensus_1244#0 ATCTTAAATCATATTATTATTATCATGATCATATATTTATTTATCTATATTACTTTATAT TAGTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAA TTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCT GTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTAT TTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCA AGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTC TCCAGATAATAGTGGGGAAGAAATGTATGAAAATTTAACAAAATTAGGTTTATCTTGTAC ATTGATATTAGATTCTGCAATGGGATATGTCATGGAACAAGTTGATATGGTCATGGTAGG AGCAGAAGGGGTTGCNGAAAGTGGAGGTGTTATTAACAAGNNNGGCACATATACAATGGC AATGTGTGCTAAAGAGNTNANGAAACCATTTTATGTCTTAACAGAGAGTTTCAAATTTTC AAGAATATATCCCTTAAATCAAGTAGATCTTCCAAATGAGTTTAAATATACAGCAAGTA



consensusID : consensus_1244#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence
                              [TCTGTCAATACTTTAATGATATTATCAAAGATGAAAAAGATGTTTCTGCTGGAATGGCTGCTATACGTACACTATTAAAAGTTTTGGAGTATTCAAAGTCTGAAACGGTTCAAGAACTCAGGTACTGTTTACAGAATGCAATAGATGCAATGAGATCTACTGAAAATCCTGTAACTGCCATTGCATCTGGAAGTGAATTATTTCTTCGTTTTATAACTTTGGCTACATTAGATACTCCTTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGATTCTGCAATGGGATATGTCATGGAACAA]

[+] EMBL BI508947             [TCTGTCAATACTTTAATGATATTATCAAAGATGAAAAAGATGTTTCTGCTGGAATGGCTGCTATACGTACACTATTAAAAGTTTTGGAGTATTCAAAGTCTGAAACGGTTCAAGAACTCAGGTACTGTTTACAGAATGCAATAGATGCAATGAGATCTACTGAAAATCCTGTAACTGCCATTGCATCTGGAAGTGAATTATTTCTTCGTTTTATAACTTTGGCTACATTAGATACTCCTTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGATTCTGCAATGGGATATGTCATGGAACAA]


>consensus_1244#1 TCTGTCAATACTTTAATGATATTATCAAAGATGAAAAAGATGTTTCTGCTGGAATGGCTG CTATACGTACACTATTAAAAGTTTTGGAGTATTCAAAGTCTGAAACGGTTCAAGAACTCA GGTACTGTTTACAGAATGCAATAGATGCAATGAGATCTACTGAAAATCCTGTAACTGCCA TTGCATCTGGAAGTGAATTATTTCTTCGTTTTATAACTTTGGCTACATTAGATACTCCTT CATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAG TAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAA TTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTT TTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCA ATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCA GATAATAGTGGATTCTGCAATGGGATATGTCATGGAACAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1244#0      ------------------------------------------------------------
consensus_1244#1      TCTGTCAATACTTTAATGATATTATCAAAGATGAAAAAGATGTTTCTGCTGGAATGGCTG 60
                                                                                  

consensus_1244#0      ------------------------------------------------------------
consensus_1244#1      CTATACGTACACTATTAAAAGTTTTGGAGTATTCAAAGTCTGAAACGGTTCAAGAACTCA 120
                                                                                  

consensus_1244#0      --------------------------------------ATCTTAAATCATATTATTATTA 22
consensus_1244#1      GGTACTGTTTACAGAATGCAATAGATGCAATGAGATCTACTGAAAATCCTGTAACTGCCA 180
                                                            *    ***** * * * *   *

consensus_1244#0      TCATGATCATATAT---TTATTTATCTATATTA---CTTT----ATATTAG--------T 64
consensus_1244#1      TTGCATCTGGAAGTGAATTATTTCTTCGTTTTATAACTTTGGCTACATTAGATACTCCTT 240
                      *         *  *   ****** *   * ***   ****    * *****        *

consensus_1244#0      CATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAG 124
consensus_1244#1      CATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAG 300
                      ************************************************************

consensus_1244#0      TAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAA 184
consensus_1244#1      TAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAA 360
                      ************************************************************

consensus_1244#0      TTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTT 244
consensus_1244#1      TTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTT 420
                      ************************************************************

consensus_1244#0      TTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCA 304
consensus_1244#1      TTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCA 480
                      ************************************************************

consensus_1244#0      ATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCA 364
consensus_1244#1      ATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCA 540
                      ************************************************************

consensus_1244#0      GATAATAGTGGGGAA-GAAATGTATGAAAATTTAACAAAATTAGGTTTATCTTGTACATT 423
consensus_1244#1      GATAATAGTGGATTCTGCAATG---GGATATGTCATGGAACAA----------------- 580
                      ***********     * ****   * * ** * *   **  *                 

consensus_1244#0      GATATTAGATTCTGCAATGGGATATGTCATGGAACAAGTTGATATGGTCATGGTAGGAGC 483
consensus_1244#1      ------------------------------------------------------------
                                                                                  

consensus_1244#0      AGAAGGGGTTGCNGAAAGTGGAGGTGTTATTAACAAGNNNGGCACATATACAATGGCAAT 543
consensus_1244#1      ------------------------------------------------------------
                                                                                  

consensus_1244#0      GTGTGCTAAAGAGNTNANGAAACCATTTTATGTCTTAACAGAGAGTTTCAAATTTTCAAG 603
consensus_1244#1      ------------------------------------------------------------
                                                                                  

consensus_1244#0      AATATATCCCTTAAATCAAGTAGATCTTCCAAATGAGTTTAAATATACAGCAAGTA 659
consensus_1244#1      --------------------------------------------------------
                                                                              




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)