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Apis mellifera
cluster # 1263 cluster # 1263       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1263#0 length = 563 sequences # 1  
consensus_1263#1 length = 397 sequences # 1  

consensusID : consensus_1263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence
                              [ATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTATTAGCATGTTTGATAGACTTTTTTACAAATTCGCGGCAATACATACCAGACAGAACAGGGGTAAAAGAAGGAGAACTTACGATGACTTTCAAAAGCATATTCCAAGATGTTCGAAACGCTGTAGATTGGATACATCTTCATGGTAATTTAAAAACAAAAACAATGGAAAATTTAGATCTATATGTGAAGAAAGACAGGAGACTACCAATGTTTCTTAATAGGATTAGAGAAAGCGGGGCAAAAATATTTCTCTTAACAAATAGCGAGTACGTTTTTACTAATAAAATTATGACTTATCTCTTCGATTTTCCACATGGTGCAAAGCCTGATGAACCTCATAGAAATTGGAAAACATATTTTGATACTATAGTAGTAGATGCTAGGAAACCACTATTTTTTGGTGAAGGTACAATTTTACGGCAAGTAGATACTAAAACTGGAGCTCTAAAACTTGGCACGCACAAAGGTCCACTTCATACAGGAGAAGTTTATTCAGGAGGCTCATGTGATGTATTCACCGAA]

[+] EMBL BI507728             [ATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTATTAGCATGTTTGATAGACTTTTTTACAAATTCGCGGCAATACATACCAGACAGAACAGGGGTAAAAGAAGGAGAACTTACGATGACTTTCAAAAGCATATTCCAAGATGTTCGAAACGCTGTAGATTGGATACATCTTCATGGTAATTTAAAAACAAAAACAATGGAAAATTTAGATCTATATGTGAAGAAAGACAGGAGACTACCAATGTTTCTTAATAGGATTAGAGAAAGCGGGGCAAAAATATTTCTCTTAACAAATAGCGAGTACGTTTTTACTAATAAAATTATGACTTATCTCTTCGATTTTCCACATGGTGCAAAGCCTGATGAACCTCATAGAAATTGGAAAACATATTTTGATACTATAGTAGTAGATGCTAGGAAACCACTATTTTTTGGTGAAGGTACAATTTTACGGCAAGTAGATACTAAAACTGGAGCTCTAAAACTTGGCACGCACAAAGGTCCACTTCATACAGGAGAAGTTTATTCAGGAGGCTCATGTGATGTATTCACCGAA]


>consensus_1263#0 ATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTATTAGCATGTTTGATAGACT TTTTTACAAATTCGCGGCAATACATACCAGACAGAACAGGGGTAAAAGAAGGAGAACTTA CGATGACTTTCAAAAGCATATTCCAAGATGTTCGAAACGCTGTAGATTGGATACATCTTC ATGGTAATTTAAAAACAAAAACAATGGAAAATTTAGATCTATATGTGAAGAAAGACAGGA GACTACCAATGTTTCTTAATAGGATTAGAGAAAGCGGGGCAAAAATATTTCTCTTAACAA ATAGCGAGTACGTTTTTACTAATAAAATTATGACTTATCTCTTCGATTTTCCACATGGTG CAAAGCCTGATGAACCTCATAGAAATTGGAAAACATATTTTGATACTATAGTAGTAGATG CTAGGAAACCACTATTTTTTGGTGAAGGTACAATTTTACGGCAAGTAGATACTAAAACTG GAGCTCTAAAACTTGGCACGCACAAAGGTCCACTTCATACAGGAGAAGTTTATTCAGGAG GCTCATGTGATGTATTCACCGAA



consensusID : consensus_1263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence
                              [AGTCAAAGAATTTTTGTGAATCGTAGTCTTCATTTAGAAAATATCAAGTTTTATGGCTTCGACATGGATTATACTTTGGCAGAATACAAATCACCAGAATACGAACAATTGGGTTTTACATTGTTAAAAGATCGTCTAGTATCTCTGGGATATCCAGAAGAAATTAAAGCATTTGAATATGATCCTAGTTTTCCGGTACGAGGATTATGGTTTGATAGTCTTTATGGAAATCTTCTTAAAGTGGACGCTTATGGAAATATCTTAGTTTGCGTTCACGGTTTCGAATTTTTGAAACATTCACAAGTATATGAGCTTTATCCGAATAAATTTTTACAATTAGATGAATCTAGAGTATATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTAT]

[+] EMBL BI510509             [AGTCAAAGAATTTTTGTGAATCGTAGTCTTCATTTAGAAAATATCAAGTTTTATGGCTTCGACATGGATTATACTTTGGCAGAATACAAATCACCAGAATACGAACAATTGGGTTTTACATTGTTAAAAGATCGTCTAGTATCTCTGGGATATCCAGAAGAAATTAAAGCATTTGAATATGATCCTAGTTTTCCGGTACGAGGATTATGGTTTGATAGTCTTTATGGAAATCTTCTTAAAGTGGACGCTTATGGAAATATCTTAGTTTGCGTTCACGGTTTCGAATTTTTGAAACATTCACAAGTATATGAGCTTTATCCGAATAAATTTTTACAATTAGATGAATCTAGAGTATATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTAT]


>consensus_1263#1 AGTCAAAGAATTTTTGTGAATCGTAGTCTTCATTTAGAAAATATCAAGTTTTATGGCTTC GACATGGATTATACTTTGGCAGAATACAAATCACCAGAATACGAACAATTGGGTTTTACA TTGTTAAAAGATCGTCTAGTATCTCTGGGATATCCAGAAGAAATTAAAGCATTTGAATAT GATCCTAGTTTTCCGGTACGAGGATTATGGTTTGATAGTCTTTATGGAAATCTTCTTAAA GTGGACGCTTATGGAAATATCTTAGTTTGCGTTCACGGTTTCGAATTTTTGAAACATTCA CAAGTATATGAGCTTTATCCGAATAAATTTTTACAATTAGATGAATCTAGAGTATATGTG CTCAATACACTATTCAATCTTCCCGAATCATATTTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1263#0      ATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTATTAGCATGTTTGATAGACT 60
consensus_1263#1      ------------------------------------------------------------
                                                                                  

consensus_1263#0      TTTTTACAAATTCGCGGCAATACATACCAGACAGAACAGGGGTAAAAGAAGGAGAACTTA 120
consensus_1263#1      ----------------------------------------AGTCAAAGAATTTTTGTGAA 20
                                                               ** ******         *

consensus_1263#0      CGATGACTTTCAAA-AGCATATTCCAAGATGTTCGAAACGCTGTAGATTGGATACATCTT 179
consensus_1263#1      TCGTAGTCTTCATTTAGAAAATATCAAG---TTTTATGGCTTCGACATGGATTATACTTT 77
                         *    ****   ** * **  ****   **  *     *  * ** *  ** *  **

consensus_1263#0      CATGGTAATTTAAAAACAAAAACAATGGAAAATTTAGATCTATATGTGAAGAAAGACAGG 239
consensus_1263#1      GGCAGAATACAAATCACCAGAATA-CGAACAATTGGGTTTTACAT-TGTTAAAAGATCGT 135
                          * *    **  ** * ** *  * * ****  * * ** ** **   *****  * 

consensus_1263#0      AGACTACCAATGTTTCTTAATAGGATTAGAGAAAGCGGGGCAAAAATATTTCTCTTAACA 299
consensus_1263#1      ------CTAGTATCTCTGGGATATCCAGAAGAAATTAAAGCA----------TTTGAATA 179
                            * * * * ***            *****     ***          * * ** *

consensus_1263#0      AATAGCGAGTACGTTTTTACTAATAAAATTATGACTTA----TCTCTTCGATTTTCCACA 355
consensus_1263#1      TGATCCTAGT---TTTCCGGTACGAGGATTATGGTTTGATAGTCTTTATGGAAATCTTCT 236
                           * ***   ***    **  *  ******  **     *** *  *    **  * 

consensus_1263#0      TGGTGCAAAGCCTGATGAACCTCATAGAAATTGGAAAACATATTTTGATACTATAGTAGT 415
consensus_1263#1      TAAAGTGGACGCTTATGGAAAT-ATCTTAGTTTGCGTTCACGGTTTCGAATTTTTGAAAC 295
                      *   *   *  ** *** *  * **   * ** *    **   ***   * * * * *  

consensus_1263#0      AGATGCTAGGAAACCACTATTTTTTGGTGAAGGTACAATTTTACGGCAAGTAGATACTAA 475
consensus_1263#1      ATTCACAAGTATATGAGCTTTATCCGA-----ATAAATTTTTA---CAATTAGATG---A 344
                      *    * ** * *  *   ** *  *       ** * *****   *** *****    *

consensus_1263#0      AACTGGAGCTCTAAAACTTGGCACGCACAAAGGTCCACTTCATACAGGAGAAGTTTATTC 535
consensus_1263#1      ATCTAGAGTATATGTGCTCAATACACT-----ATTCAATCTTCCCGAATCATATTTAT-- 397
                      * ** ***        **    ** *       * ** *     *     *  *****  

consensus_1263#0      AGGAGGCTCATGTGATGTATTCACCGAA 563
consensus_1263#1      ----------------------------
                                                  




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)