These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [ATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTATTAGCATGTTTGATAGACTTTTTTACAAATTCGCGGCAATACATACCAGACAGAACAGGGGTAAAAGAAGGAGAACTTACGATGACTTTCAAAAGCATATTCCAAGATGTTCGAAACGCTGTAGATTGGATACATCTTCATGGTAATTTAAAAACAAAAACAATGGAAAATTTAGATCTATATGTGAAGAAAGACAGGAGACTACCAATGTTTCTTAATAGGATTAGAGAAAGCGGGGCAAAAATATTTCTCTTAACAAATAGCGAGTACGTTTTTACTAATAAAATTATGACTTATCTCTTCGATTTTCCACATGGTGCAAAGCCTGATGAACCTCATAGAAATTGGAAAACATATTTTGATACTATAGTAGTAGATGCTAGGAAACCACTATTTTTTGGTGAAGGTACAATTTTACGGCAAGTAGATACTAAAACTGGAGCTCTAAAACTTGGCACGCACAAAGGTCCACTTCATACAGGAGAAGTTTATTCAGGAGGCTCATGTGATGTATTCACCGAA] [+] EMBL BI507728 [ATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTATTAGCATGTTTGATAGACTTTTTTACAAATTCGCGGCAATACATACCAGACAGAACAGGGGTAAAAGAAGGAGAACTTACGATGACTTTCAAAAGCATATTCCAAGATGTTCGAAACGCTGTAGATTGGATACATCTTCATGGTAATTTAAAAACAAAAACAATGGAAAATTTAGATCTATATGTGAAGAAAGACAGGAGACTACCAATGTTTCTTAATAGGATTAGAGAAAGCGGGGCAAAAATATTTCTCTTAACAAATAGCGAGTACGTTTTTACTAATAAAATTATGACTTATCTCTTCGATTTTCCACATGGTGCAAAGCCTGATGAACCTCATAGAAATTGGAAAACATATTTTGATACTATAGTAGTAGATGCTAGGAAACCACTATTTTTTGGTGAAGGTACAATTTTACGGCAAGTAGATACTAAAACTGGAGCTCTAAAACTTGGCACGCACAAAGGTCCACTTCATACAGGAGAAGTTTATTCAGGAGGCTCATGTGATGTATTCACCGAA] consensusID : consensus_1263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [AGTCAAAGAATTTTTGTGAATCGTAGTCTTCATTTAGAAAATATCAAGTTTTATGGCTTCGACATGGATTATACTTTGGCAGAATACAAATCACCAGAATACGAACAATTGGGTTTTACATTGTTAAAAGATCGTCTAGTATCTCTGGGATATCCAGAAGAAATTAAAGCATTTGAATATGATCCTAGTTTTCCGGTACGAGGATTATGGTTTGATAGTCTTTATGGAAATCTTCTTAAAGTGGACGCTTATGGAAATATCTTAGTTTGCGTTCACGGTTTCGAATTTTTGAAACATTCACAAGTATATGAGCTTTATCCGAATAAATTTTTACAATTAGATGAATCTAGAGTATATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTAT] [+] EMBL BI510509 [AGTCAAAGAATTTTTGTGAATCGTAGTCTTCATTTAGAAAATATCAAGTTTTATGGCTTCGACATGGATTATACTTTGGCAGAATACAAATCACCAGAATACGAACAATTGGGTTTTACATTGTTAAAAGATCGTCTAGTATCTCTGGGATATCCAGAAGAAATTAAAGCATTTGAATATGATCCTAGTTTTCCGGTACGAGGATTATGGTTTGATAGTCTTTATGGAAATCTTCTTAAAGTGGACGCTTATGGAAATATCTTAGTTTGCGTTCACGGTTTCGAATTTTTGAAACATTCACAAGTATATGAGCTTTATCCGAATAAATTTTTACAATTAGATGAATCTAGAGTATATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1263#0 ATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTATTAGCATGTTTGATAGACT 60 consensus_1263#1 ------------------------------------------------------------ consensus_1263#0 TTTTTACAAATTCGCGGCAATACATACCAGACAGAACAGGGGTAAAAGAAGGAGAACTTA 120 consensus_1263#1 ----------------------------------------AGTCAAAGAATTTTTGTGAA 20 ** ****** * consensus_1263#0 CGATGACTTTCAAA-AGCATATTCCAAGATGTTCGAAACGCTGTAGATTGGATACATCTT 179 consensus_1263#1 TCGTAGTCTTCATTTAGAAAATATCAAG---TTTTATGGCTTCGACATGGATTATACTTT 77 * **** ** * ** **** ** * * * ** * ** * ** consensus_1263#0 CATGGTAATTTAAAAACAAAAACAATGGAAAATTTAGATCTATATGTGAAGAAAGACAGG 239 consensus_1263#1 GGCAGAATACAAATCACCAGAATA-CGAACAATTGGGTTTTACAT-TGTTAAAAGATCGT 135 * * ** ** * ** * * * **** * * ** ** ** ***** * consensus_1263#0 AGACTACCAATGTTTCTTAATAGGATTAGAGAAAGCGGGGCAAAAATATTTCTCTTAACA 299 consensus_1263#1 ------CTAGTATCTCTGGGATATCCAGAAGAAATTAAAGCA----------TTTGAATA 179 * * * * *** ***** *** * * ** * consensus_1263#0 AATAGCGAGTACGTTTTTACTAATAAAATTATGACTTA----TCTCTTCGATTTTCCACA 355 consensus_1263#1 TGATCCTAGT---TTTCCGGTACGAGGATTATGGTTTGATAGTCTTTATGGAAATCTTCT 236 * *** *** ** * ****** ** *** * * ** * consensus_1263#0 TGGTGCAAAGCCTGATGAACCTCATAGAAATTGGAAAACATATTTTGATACTATAGTAGT 415 consensus_1263#1 TAAAGTGGACGCTTATGGAAAT-ATCTTAGTTTGCGTTCACGGTTTCGAATTTTTGAAAC 295 * * * ** *** * * ** * ** * ** *** * * * * * consensus_1263#0 AGATGCTAGGAAACCACTATTTTTTGGTGAAGGTACAATTTTACGGCAAGTAGATACTAA 475 consensus_1263#1 ATTCACAAGTATATGAGCTTTATCCGA-----ATAAATTTTTA---CAATTAGATG---A 344 * * ** * * * ** * * ** * ***** *** ***** * consensus_1263#0 AACTGGAGCTCTAAAACTTGGCACGCACAAAGGTCCACTTCATACAGGAGAAGTTTATTC 535 consensus_1263#1 ATCTAGAGTATATGTGCTCAATACACT-----ATTCAATCTTCCCGAATCATATTTAT-- 397 * ** *** ** ** * * ** * * * ***** consensus_1263#0 AGGAGGCTCATGTGATGTATTCACCGAA 563 consensus_1263#1 ---------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |