cluster # 1274

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Apis mellifera
cluster # 1274 cluster # 1274 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1274#0 length = 477 sequences # 1

consensus_1274#1 length = 464 sequences # 1

consensusID : consensus_1274#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [ACCGTCGGGGTCGACGAAGAAACAAAGAACACCCTCGCTTCCTGTTTCGCGCGAGTTCGATGTTCTTCCGGTTCAACGATTCCTCGGTGGTGCAGCTTCCTCGACACGTTGGCGATTCGCCATACGATTCGCGAAGGTGATCCATCTTCGAGACCGGATTCCCCTTCGAGACTCAATTCGTCTTGCGGTAATGCTGGAACCCGTAAAAATGTCCGGGCGCCGATTGAAAATCTCGTCACGTTATTGGCCGGTGATTCGTATATTTTTTGGAACGGAATGCACGGCATGATACGAAACCGATGGCCGATTGGTAGAGGGAGATCAGATATTGGCGATAGATGGACAACCACTAGATTCGAATATCTCTCATGAGCAGGCAATCTCGATCCTCCAGAAGGCACGTGGTCTGGTCGAGTTGGTCGTAGCAAGAAGCACTCAAGACGTTGGGAGCTCTTTGCCGACGGATGAGTTGTCCGG]

[+] EMBL BI507639             [ACCGTCGGGGTCGACGAAGAAACAAAGAACACCCTCGCTTCCTGTTTCGCGCGAGTTCGATGTTCTTCCGGTTCAACGATTCCTCGGTGGTGCAGCTTCCTCGACACGTTGGCGATTCGCCATACGATTCGCGAAGGTGATCCATCTTCGAGACCGGATTCCCCTTCGAGACTCAATTCGTCTTGCGGTAATGCTGGAACCCGTAAAAATGTCCGGGCGCCGATTGAAAATCTCGTCACGTTATTGGCCGGTGATTCGTATATTTTTTGGAACGGAATGCACGGCATGATACGAAACCGATGGCCGATTGGTAGAGGGAGATCAGATATTGGCGATAGATGGACAACCACTAGATTCGAATATCTCTCATGAGCAGGCAATCTCGATCCTCCAGAAGGCACGTGGTCTGGTCGAGTTGGTCGTAGCAAGAAGCACTCAAGACGTTGGGAGCTCTTTGCCGACGGATGAGTTGTCCGG]




>consensus_1274#0
ACCGTCGGGGTCGACGAAGAAACAAAGAACACCCTCGCTTCCTGTTTCGCGCGAGTTCGA
TGTTCTTCCGGTTCAACGATTCCTCGGTGGTGCAGCTTCCTCGACACGTTGGCGATTCGC
CATACGATTCGCGAAGGTGATCCATCTTCGAGACCGGATTCCCCTTCGAGACTCAATTCG
TCTTGCGGTAATGCTGGAACCCGTAAAAATGTCCGGGCGCCGATTGAAAATCTCGTCACG
TTATTGGCCGGTGATTCGTATATTTTTTGGAACGGAATGCACGGCATGATACGAAACCGA
TGGCCGATTGGTAGAGGGAGATCAGATATTGGCGATAGATGGACAACCACTAGATTCGAA
TATCTCTCATGAGCAGGCAATCTCGATCCTCCAGAAGGCACGTGGTCTGGTCGAGTTGGT
CGTAGCAAGAAGCACTCAAGACGTTGGGAGCTCTTTGCCGACGGATGAGTTGTCCGG

consensusID : consensus_1274#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [CTTCCCCTTCAACGGGTATCCATCATCATCATTTGCCACCCTCTTCGTCCCTCCCGCTCGTTTGATCCAGCACCAAGCACCAGCTCGCCAAATTTCATCCCGCGTTTCCTGTTCTTTTCCTTTCCTTTCCTTTCCCTCTTCCTCCTCCACCTCTCTTCTTTCATCCTCCCCCTCTAACCGTCGGGGTCGACGAAGAAACAAAGAACACCCTCGCTNCCTGTTTCGCGCGAGTTCGATGTTCTTCCGGTTCAACGATTCCTCGGTGGTGCAGCTNNNTCGACACGCGATGGCCGATTGGTAGAGGGAGATCAGATATTGGCGATAGATGGACAACCACTAGATTCGAATATCTCTCATGAGCAGGCAATCTCGATCCTCCAGAAGGCACGTGGTCTGGTCGAGTTGGTCGTAGCAAGAAGCACTCAAGACGTTGGGAGCTCTTTGCCGACGGATGAGTTGTCCGG]

[+] EMBL BI509112             [CTTCCCCTTCAACGGGTATCCATCATCATCATTTGCCACCCTCTTCGTCCCTCCCGCTCGTTTGATCCAGCACCAAGCACCAGCTCGCCAAATTTCATCCCGCGTTTCCTGTTCTTTTCCTTTCCTTTCCTTTCCCTCTTCCTCCTCCACCTCTCTTCTTTCATCCTCCCCCTCTAACCGTCGGGGTCGACGAAGAAACAAAGAACACCCTCGCTNCCTGTTTCGCGCGAGTTCGATGTTCTTCCGGTTCAACGATTCCTCGGTGGTGCAGCTNNNTCGACACGCGATGGCCGATTGGTAGAGGGAGATCAGATATTGGCGATAGATGGACAACCACTAGATTCGAATATCTCTCATGAGCAGGCAATCTCGATCCTCCAGAAGGCACGTGGTCTGGTCGAGTTGGTCGTAGCAAGAAGCACTCAAGACGTTGGGAGCTCTTTGCCGACGGATGAGTTGTCCGG]




>consensus_1274#1
CTTCCCCTTCAACGGGTATCCATCATCATCATTTGCCACCCTCTTCGTCCCTCCCGCTCG
TTTGATCCAGCACCAAGCACCAGCTCGCCAAATTTCATCCCGCGTTTCCTGTTCTTTTCC
TTTCCTTTCCTTTCCCTCTTCCTCCTCCACCTCTCTTCTTTCATCCTCCCCCTCTAACCG
TCGGGGTCGACGAAGAAACAAAGAACACCCTCGCTNCCTGTTTCGCGCGAGTTCGATGTT
CTTCCGGTTCAACGATTCCTCGGTGGTGCAGCTNNNTCGACACGCGATGGCCGATTGGTA
GAGGGAGATCAGATATTGGCGATAGATGGACAACCACTAGATTCGAATATCTCTCATGAG
CAGGCAATCTCGATCCTCCAGAAGGCACGTGGTCTGGTCGAGTTGGTCGTAGCAAGAAGC
ACTCAAGACGTTGGGAGCTCTTTGCCGACGGATGAGTTGTCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1274#0      ACCGTCGGGGTCGACGAAGAAACAAAGAACACCCTCGCTTCCTGTTTCGCGCGAGTTCGA 60
consensus_1274#1      --CTTCCCCTTCAACGGGTATCCAT----CATCATCATTTGCCACCCTCTTCGTCCCTCC 54
                        * **    ** ***   *  **     ** * **  ** *         **       

consensus_1274#0      TGTTCTTCCGGTTCAACG--ATTCCTCGGTGGTGCAGCTTCCTCGACACGTTGGCGATTC 118
consensus_1274#1      CGCTCGTTTGATCCAGCACCAAGCACCAGCTCGCCAAATTTCATCCCGCGTTTCCTGTT- 113
                       * ** *  * * ** *   *  *  * *     **  ** *    * ****  *  ** 

consensus_1274#0      GCCATACGATTCGCGAAGGTGATCCATCTTCGAGACCGGATTCCCCTTCGAGACTCAATT 178
consensus_1274#1      -CTTTTCCTTTCCTTTCCTT--TCCCTCTTCCTCCTCCACCTCTCTTCTTTCATCCTCCC 170
                       *  * *  ***       *  *** *****     *    ** * *     *  *    

consensus_1274#0      CGTCTTGCGGTAATGCTGGAACCCGTAAAAATGTCCGGGCGCCGATTGAAAATCTCGTCA 238
consensus_1274#1      CCTCTAACCGTCGGGGTCGACGAAGAAACAAAGAACACCCTCGCTNCCTGTTTCGCGCGA 230
                      * ***  * **   * * **    * ** ** *  *   * *          ** **  *

consensus_1274#0      CGTTATTGGCCGGT-GATTCGTATATTTTTTGGAACGGAATGCACGGCATGATACGAAAC 297
consensus_1274#1      GTTCGATGTTCTTCCGGTTCAACGATTCCTCGG--TGGTGCAGCTNNNTCGACACG---- 284
                        *   **  *    * ***    ***  * **   **            ** ***    

consensus_1274#0      CGATGGCCGATTGGTAGAGGGAGATCAGATATTGGCGATAGATGGACAACCACTAGATTC 357
consensus_1274#1      CGATGGCCGATTGGTAGAGGGAGATCAGATATTGGCGATAGATGGACAACCACTAGATTC 344
                      ************************************************************

consensus_1274#0      GAATATCTCTCATGAGCAGGCAATCTCGATCCTCCAGAAGGCACGTGGTCTGGTCGAGTT 417
consensus_1274#1      GAATATCTCTCATGAGCAGGCAATCTCGATCCTCCAGAAGGCACGTGGTCTGGTCGAGTT 404
                      ************************************************************

consensus_1274#0      GGTCGTAGCAAGAAGCACTCAAGACGTTGGGAGCTCTTTGCCGACGGATGAGTTGTCCGG 477
consensus_1274#1      GGTCGTAGCAAGAAGCACTCAAGACGTTGGGAGCTCTTTGCCGACGGATGAGTTGTCCGG 464
                      ************************************************************

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)