These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [TTTTTTTTTTTTTTGTTCGTTTAATAATAGAATAATAAAATAATAATAATAATAATTAATATTATAATTGATCATTGGTTTGATTAAATAAAAAATGATTCAGTTTTTGTTTACAAAAAATAAATTGAATAAGTTGCTGAAATATTTTTCATTTATTATTGCATTGTTGCATTTATTAATGCACATTCTGTGCATAGAATGCATATTTCTGTTCAAGTGTACCATCTTCTTCAGATTTCATATACTCCTTGAACATGTAAATAGTTTTCCCAATTGGACAGGACCAAGGGCAGTCTGGCGGGCGATATTATCATCACTAATCAATGCACGTGTCATGGACTCGGTAGGATTCAAGCCTGCGTGCTCTTGCTCATCGANNNAAACTTGTGTTTTTCGAAGTATATGCTTCAATTCAGTCAACTCCANNNAGTTACGTTTAAGTGTTTCTGCATTTTGATTAACTTCTCGTAATTCATTTTCTAATTTTTCAAATGTTGCTTCANGATCTATCATTTCTCTGGGTTNNNGAGCTTCTGGATTTTCTCCAGTATCGAGCATAGGAATACCATCTTTTTTAATTTCTTTTTCCAAATATCGTAATTTACGTTCCATTTCA] [+] EMBL BI507569 [TTTTTTTTTTTTTTGTTCGTTTAATAATAGAATAATAAAATAATAATAATAATAATTAATATTATAATTGATCATTGGTTTGATTAAATAAAAAATGATTCAGTTTTTGTTTACAAAAAATAAATTGAATAAGTTGCTGAAATATTTTTCATTTATTATTGCATTGTTGCATTTATTAATGCACATTCTGTGCATAGAATGCATATTTCTGTTCAAGTGTACCATCTTCTTCAGATTTCATATACTCCTTGAACATGTAAATAGTTTTCCCAATTGGACAGGACCAAGGGCAGTCTGGCGGGCGATATTATCATCACTAATCAATGCACGTGTCATGGACTCGGTAGGATTCAAGCCTGCGTGCTCTTGCTCATCGANNNAAACTTGTGTTTTTCGAAGTATATGCTTCAATTCAGTCAACTCCANNNAGTTACGTTTAAGTGTTTCTGCATTTTGATTAACTTCTCGTAATTCATTTTCTAATTTTTCAAATGTTGCTTCANGATCTATCATTTCTCTGGGTTNNNGAGCTTCTGGATTTTCTCCAGTATCGAGCATAGGAATACCATCTTTTTTAATTTCTTTTTCCAAATATCGTAATTTACGTTCCATTTCA] consensusID : consensus_1285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [TTTGCAGCAGCTACTAAAACACGATGTCGATGATCTTGAGTTTGTCCAAGAACTGTGTTTAGATCTTCAATTCGAGTCATAACACCCATAGCCATTTCACGGCGATCAGCAGGTGCTTCAGGGCAAGGATATAAAGTTGCTCTAAATCCTTCACAAATTTTTTTAACTCGAGTTTTCAATTGATCTCCTTGGAAAAATATGATAAACACAGATTTAAAGACTTGATCTCCCGTTGAAGGATCTTCCAGAGGAGTTTCAATTTCTGCTTGACGTAGAAATACATTACCACGACATGCACGCCAAAGCATACGTTCAAATGCTGGAATACGTTCTCGTAGAATTACTCCTGCGACGAAACCGAGCTTGAGAGCCTGGCCGCCAGCGCGGAGGCCCTCTTCACCCAAGAGAGTGACTTGTTCTTCCTCACGNNTGGGGTCTGCCATCTCATCGAAGAAAACTTGTGTTTTTCGAAGTATATGCTTCAATTCAGTCAACTCCAAGAAGTTACGTTTAAGTGTTTCTGCATTTTGATTAACTTCTCGTAATTCATTTTCTAATTTTTCAAATGTTGCTTC] [+] EMBL BI510225 [TTTGCAGCAGCTACTAAAACACGATGTCGATGATCTTGAGTTTGTCCAAGAACTGTGTTTAGATCTTCAATTCGAGTCATAACACCCATAGCCATTTCACGGCGATCAGCAGGTGCTTCAGGGCAAGGATATAAAGTTGCTCTAAATCCTTCACAAATTTTTTTAACTCGAGTTTTCAATTGATCTCCTTGGAAAAATATGATAAACACAGATTTAAAGACTTGATCTCCCGTTGAAGGATCTTCCAGAGGAGTTTCAATTTCTGCTTGACGTAGAAATACATTACCACGACATGCACGCCAAAGCATACGTTCAAATGCTGGAATACGTTCTCGTAGAATTACTCCTGCGACGAAACCGAGCTTGAGAGCCTGGCCGCCAGCGCGGAGGCCCTCTTCACCCAAGAGAGTGACTTGTTCTTCCTCACGNNTGGGGTCTGCCATCTCATCGAAGAAAACTTGTGTTTTTCGAAGTATATGCTTCAATTCAGTCAACTCCAAGAAGTTACGTTTAAGTGTTTCTGCATTTTGATTAACTTCTCGTAATTCATTTTCTAATTTTTCAAATGTTGCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1285#0 -------------------------------------------------------TTTTT 5 consensus_1285#1 TTTGCAGCAGCTACTAAAACACGATGTCGATGATCTTGAGTTTGTCCAAGAACTGTGTTT 60 * *** consensus_1285#0 TTTTTTTTTGTTCGTTTAATAATAGA-ATAATAAAATAATAATAATAATAA------TTA 58 consensus_1285#1 AGATCTTCAATTCGAGTCATAACACCCATAGCCATTTCACGGCGATCAGCAGGTGCTTCA 120 * ** **** * **** * *** * * * ** * * * * consensus_1285#0 ATATTATAATTGATCATTGGTTTGATTAAATAAAAAATGATTC-AGTTTTTGTTTACAAA 117 consensus_1285#1 GGGCAAGGATATAAAGTTGCTCTAAATCCTTCACAAATTTTTTTAACTCGAGTTTTCAAT 180 * ** * *** * * * * * * **** ** * * **** *** consensus_1285#0 AAATAAATT--GAATAAGTTGCTGAA-ATATTTTTCA---TTTATTATTGCATTGTTGCA 171 consensus_1285#1 TGATCTCCTTGGAAAAATATGATAAACACAGATTTAAAGACTTGATCTCCCGTTGAAGGA 240 ** * *** ** ** * ** * * *** * ** * * * *** * * consensus_1285#0 TTTATTAATGCACATTCTGTGCATAGAATGCATATTTCTGTTCAAGTGTACCATCTTCTT 231 consensus_1285#1 TCTTCCAGAGGAGTTTCAATTTCTGCTTGACGTAGAAATACATTACCACGACATGCACGC 300 * * * * * *** * * * ** * * *** * consensus_1285#0 CAGATTTCATATAC---TCCTTGAACATGTAA--ATAGTTTTCCCAATTGGACAGGACCA 286 consensus_1285#1 CAAAGCATACGTTCAAATGCTGGAATACGTTCTCGTAGAATTACTCCTGCGACGAAACCG 360 ** * * * * * ** *** * ** *** ** * * *** *** consensus_1285#0 AG---GGCAGTCTGGCGGGCGATATTATCATCACTAATCAATGCACGTGTCATGGACTCG 343 consensus_1285#1 AGCTTGAGAGCCTGGCCGCCAGCGCGGAGGCC-CTCTTCA---CCCAAGAGAGTGACTTG 416 ** * ** ***** * * * ** *** * * * * **** * consensus_1285#0 GTAGGATTCAAGCCTGCGTGCTCTTG-CTCATCGANNNAAACTTGTGTTTTTCGAAGTAT 402 consensus_1285#1 TTCTTCCTCACGNNTGGGGTCTGCCATCTCATCGAAGAAAACTTGTGTTTTTCGAAGTAT 476 * *** * ** * ** ******** ********************** consensus_1285#0 ATGCTTCAATTCAGTCAACTCCANNNAGTTACGTTTAAGTGTTTCTGCATTTTGATTAAC 462 consensus_1285#1 ATGCTTCAATTCAGTCAACTCCAAGAAGTTACGTTTAAGTGTTTCTGCATTTTGATTAAC 536 *********************** ********************************** consensus_1285#0 TTCTCGTAATTCATTTTCTAATTTTTCAAATGTTGCTTCANGATCTATCATTTCTCTGGG 522 consensus_1285#1 TTCTCGTAATTCATTTTCTAATTTTTCAAATGTTGCTTC--------------------- 575 *************************************** consensus_1285#0 TTNNNGAGCTTCTGGATTTTCTCCAGTATCGAGCATAGGAATACCATCTTTTTTAATTTC 582 consensus_1285#1 ------------------------------------------------------------ consensus_1285#0 TTTTTCCAAATATCGTAATTTACGTTCCATTTCA 616 consensus_1285#1 ---------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |