These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1305#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GCTACGTTAGTTACATTAAATGTACCCAGTGGCACAGAATTTGGAATAGATTTAAAATCGTGGAACACAGCAGATAAATTTAAAGGTATTAAAATGATTCCACCAGGCTTTCATTATATCCATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACATTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCAGAAAGTACGATGATAGTACTTAATTTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGAATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAATGGAAAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCTTTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAGAATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTCTTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAACAATATCCAGATGGAGCATCACCAACTGAAATTACAAAATATTCTTTGGATTCAAGTTATGTATTG] [+] EMBL BI507407 [GCTACGTTAGTTACATTAAATGTACCCAGTGGCACAGAATTTGGAATAGATTTAAAATCGTGGAACACAGCAGATAAATTTAAAGGTATTAAAATGATTCCACCAGGCTTTCATTATATCCATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACATTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCAGAAAGTACGATGATAGTACTTAATTTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGAATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAATGGAAAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCTTTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAGAATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTCTTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAACAATATCCAGATGGAGCATCACCAACTGAAATTACAAAATATTCTTTGGATTCAAGTTATGTATTG] consensusID : consensus_1305#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CTTTCATTATATCCATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACATTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCAGAAATTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGAATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAGTGGAAAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCTTTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAGAATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTCTTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAACAATATCCAGATGGAGCATCACCAACTGAAATTANNAAATATTCTTTGGATTCAAGTTATGTATTGGATATTATT] [+] EMBL BI514643 [CTTTCATTATATCCATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACATTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCAGAAATTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGAATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAGTGGAAAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCTTTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAGAATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTCTTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAACAATATCCAGATGGAGCATCACCAACTGAAATTANNAAATATTCTTTGGATTCAAGTTATGTATTGGATATTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1305#0 GCTACGTTAGTTACATTAAATGTACCCAGTGGCACAGAATTTGGAATAGATTTAAAATCG 60 consensus_1305#1 ------------------------------------------------------------ consensus_1305#0 TGGAACACAGCAGATAAATTTAAAGGTATTAAAATGATTCCACCAGGCTTTCATTATATC 120 consensus_1305#1 -----------------------------------------------CTTTCATTATATC 13 ************* consensus_1305#0 CATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACA 180 consensus_1305#1 CATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACA 73 ************************************************************ consensus_1305#0 TTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCA 240 consensus_1305#1 TTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCA 133 ************************************************************ consensus_1305#0 GAAAGTACGATGATAGTACTTAATTTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGA 300 consensus_1305#1 GAAA--------------------TTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGA 173 **** ************************************ consensus_1305#0 ATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAATGGA 360 consensus_1305#1 ATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAGTGGA 233 ******************************************************* **** consensus_1305#0 AAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCT 420 consensus_1305#1 AAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCT 293 ************************************************************ consensus_1305#0 TTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAG 480 consensus_1305#1 TTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAG 353 ************************************************************ consensus_1305#0 AATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTC 540 consensus_1305#1 AATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTC 413 ************************************************************ consensus_1305#0 TTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAAC 600 consensus_1305#1 TTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAAC 473 ************************************************************ consensus_1305#0 AATATCCAGATGGAGCATCACCAACTGAAATTACAAAATATTCTTTGGATTCAAGTTATG 660 consensus_1305#1 AATATCCAGATGGAGCATCACCAACTGAAATTANNAAATATTCTTTGGATTCAAGTTATG 533 ********************************* ************************* consensus_1305#0 TATTG--------- 665 consensus_1305#1 TATTGGATATTATT 547 ***** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |