Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1305 cluster # 1305       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1305#0 length = 665 sequences # 1  
consensus_1305#1 length = 547 sequences # 1  

consensusID : consensus_1305#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence
                              [GCTACGTTAGTTACATTAAATGTACCCAGTGGCACAGAATTTGGAATAGATTTAAAATCGTGGAACACAGCAGATAAATTTAAAGGTATTAAAATGATTCCACCAGGCTTTCATTATATCCATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACATTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCAGAAAGTACGATGATAGTACTTAATTTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGAATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAATGGAAAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCTTTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAGAATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTCTTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAACAATATCCAGATGGAGCATCACCAACTGAAATTACAAAATATTCTTTGGATTCAAGTTATGTATTG]

[+] EMBL BI507407             [GCTACGTTAGTTACATTAAATGTACCCAGTGGCACAGAATTTGGAATAGATTTAAAATCGTGGAACACAGCAGATAAATTTAAAGGTATTAAAATGATTCCACCAGGCTTTCATTATATCCATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACATTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCAGAAAGTACGATGATAGTACTTAATTTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGAATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAATGGAAAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCTTTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAGAATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTCTTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAACAATATCCAGATGGAGCATCACCAACTGAAATTACAAAATATTCTTTGGATTCAAGTTATGTATTG]


>consensus_1305#0 GCTACGTTAGTTACATTAAATGTACCCAGTGGCACAGAATTTGGAATAGATTTAAAATCG TGGAACACAGCAGATAAATTTAAAGGTATTAAAATGATTCCACCAGGCTTTCATTATATC CATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACA TTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCA GAAAGTACGATGATAGTACTTAATTTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGA ATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAATGGA AAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCT TTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAG AATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTC TTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAAC AATATCCAGATGGAGCATCACCAACTGAAATTACAAAATATTCTTTGGATTCAAGTTATG TATTG



consensusID : consensus_1305#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence
                              [CTTTCATTATATCCATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACATTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCAGAAATTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGAATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAGTGGAAAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCTTTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAGAATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTCTTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAACAATATCCAGATGGAGCATCACCAACTGAAATTANNAAATATTCTTTGGATTCAAGTTATGTATTGGATATTATT]

[+] EMBL BI514643             [CTTTCATTATATCCATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACATTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCAGAAATTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGAATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAGTGGAAAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCTTTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAGAATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTCTTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAACAATATCCAGATGGAGCATCACCAACTGAAATTANNAAATATTCTTTGGATTCAAGTTATGTATTGGATATTATT]


>consensus_1305#1 CTTTCATTATATCCATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGG TTTTTTCCATACATTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGA AGATTTGAGTTCAGAAATTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGAATATGAA AGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAGTGGAAAGATTT AACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCTTTGTAAG ATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAGAATCAAA ACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTCTTCCTGA TATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAACAATATCC AGATGGAGCATCACCAACTGAAATTANNAAATATTCTTTGGATTCAAGTTATGTATTGGA TATTATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1305#0      GCTACGTTAGTTACATTAAATGTACCCAGTGGCACAGAATTTGGAATAGATTTAAAATCG 60
consensus_1305#1      ------------------------------------------------------------
                                                                                  

consensus_1305#0      TGGAACACAGCAGATAAATTTAAAGGTATTAAAATGATTCCACCAGGCTTTCATTATATC 120
consensus_1305#1      -----------------------------------------------CTTTCATTATATC 13
                                                                     *************

consensus_1305#0      CATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACA 180
consensus_1305#1      CATTACAGTGCTATAGATGAATTTGGAGAAGCAAAACCAAAAGTTGGTTTTTTCCATACA 73
                      ************************************************************

consensus_1305#0      TTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCA 240
consensus_1305#1      TTTAAGAAATCTGAATTTTTAGTTAAACATTGGGATACAACAGAAGAAGATTTGAGTTCA 133
                      ************************************************************

consensus_1305#0      GAAAGTACGATGATAGTACTTAATTTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGA 300
consensus_1305#1      GAAA--------------------TTGTAGAACAAGAGACAGTTGAAAGATTGAAGAAGA 173
                      ****                    ************************************

consensus_1305#0      ATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAATGGA 360
consensus_1305#1      ATATGAAAGATTTAGATAAATTTCTAGGATGTTATCCTTATGATATATGGAAGCAGTGGA 233
                      ******************************************************* ****

consensus_1305#0      AAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCT 420
consensus_1305#1      AAGATTTAACAAATCACATTACTCCTTCTCTTGTAGAACGTTGCTCACCTATATGTGGCT 293
                      ************************************************************

consensus_1305#0      TTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAG 480
consensus_1305#1      TTGTAAGATCAGCTTTAGAATTAGAATATTGTTCTGATGCTACAAGGCCAAGAGGTGGAG 353
                      ************************************************************

consensus_1305#0      AATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTC 540
consensus_1305#1      AATCAAAACCAAAAAAAAGAAGGAGTGGAATTACTGTAGAAGAAAAAGAAGATGAACTTC 413
                      ************************************************************

consensus_1305#0      TTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAAC 600
consensus_1305#1      TTCCTGATATGAAACCTAAACCTGGTACAGAACTTCGACTTTCTAAAATACCTAACAAAC 473
                      ************************************************************

consensus_1305#0      AATATCCAGATGGAGCATCACCAACTGAAATTACAAAATATTCTTTGGATTCAAGTTATG 660
consensus_1305#1      AATATCCAGATGGAGCATCACCAACTGAAATTANNAAATATTCTTTGGATTCAAGTTATG 533
                      *********************************  *************************

consensus_1305#0      TATTG--------- 665
consensus_1305#1      TATTGGATATTATT 547
                      *****         




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)