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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence
[TTATACGTAACTGTGTATATGAATATTTTTACCAATTAACAAATGTCGATATTGCTTATTATCTGTAATTAAAACCAGAGGGCAATCTTGTAGTTTCTTCTAAATTCTGTTTTGTCACAAGTTGTAGCATAAACGAACATGAGCAATGGATGCACGTAGAAGAGATAGAGAACAAATTGGATTATGTGGTGTTGACAGAATTTGGGGAAAATCGCCAACACGAATCGAAGATTCTGACGAAGATGAAGAAATTAATCGATATAAAGACAATATTATGCCAAGAATTAGAAAAAGGAAACAAGAAATGAAGAAGAAGAAAAGTAAAAAATTAAAAAAAGAAAAGAAAGCTAAGAAGGTAAAAAAGAAAAAATATAAAAAGAAAAAGAAAAAATCAGATAGTAGTTCTGATAGTGAATTGGAGGAATTGGAATGGGTAGAAAAAAATGGAATTAATGACAAAGCAAAGATTAAGAAAGGATCAAGTTCAGATGAAAGTGGTGATGAAGGCATAGTAGGCCCAGTTCAGAAACCACATGTGACATTATCTGCTAAAGATTTTGGCAAAGCTCTTCTGCCTGGTGAAGGTGCTGCTAT]
[+] EMBL BI507371 [TTATACGTAACTGTGTATATGAATATTTTTACCAATTAACAAATGTCGATATTGCTTATTATCTGTAATTAAAACCAGAGGGCAATCTTGTAGTTTCTTCTAAATTCTGTTTTGTCACAAGTTGTAGCATAAACGAACATGAGCAATGGATGCACGTAGAAGAGATAGAGAACAAATTGGATTATGTGGTGTTGACAGAATTTGGGGAAAATCGCCAACACGAATCGAAGATTCTGACGAAGATGAAGAAATTAATCGATATAAAGACAATATTATGCCAAGAATTAGAAAAAGGAAACAAGAAATGAAGAAGAAGAAAAGTAAAAAATTAAAAAAAGAAAAGAAAGCTAAGAAGGTAAAAAAGAAAAAATATAAAAAGAAAAAGAAAAAATCAGATAGTAGTTCTGATAGTGAATTGGAGGAATTGGAATGGGTAGAAAAAAATGGAATTAATGACAAAGCAAAGATTAAGAAAGGATCAAGTTCAGATGAAAGTGGTGATGAAGGCATAGTAGGCCCAGTTCAGAAACCACATGTGACATTATCTGCTAAAGATTTTGGCAAAGCTCTTCTGCCTGGTGAAGGTGCTGCTAT]
consensusID : consensus_1307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[GCTCTTCTGCCTGGTGAAGGTGCTGCTATGGCTGCATATGTTGCAGAAGGAAAACGTATACCTAGAAGAGGTGAAATTGGTTTAACTTCTGAAGAGATTGCTGCATATGAAGCTGTTGGTTATGTTATGAGTGGTAGCAGACATCGACGAATGGAAGCTGTTCGTATCAGAAAAGAGAACCAGATTTATTCTGCTGATGAGAAACGAGCATTGGCTATGTTTAGTAAAGAAGAACGACAAAAAAGAGAAAATCTTATTTTGGGACAATTTAGAGAGATGGTTAATCAAAAATTGGCACAAGAACAAAAAAAGAAAATAACATGATTGTTTTATGTAAAAATAATATATTTGATAATGTATATAAAATTCTTGAATGTATTATAAAATATTATTTATATGTATGTATATATATATATATATATATGTGTATACATACATTAAAATATATTATCTACTTATTATTAGTTAATTATATATCATATAATACATTAATTATTATGAAAAATAAATTAAACAATTTTCATTTTATGAATAAAAAAAA]
[+] EMBL BI508918 [GCTCTTCTGCCTGGTGAAGGTGCTGCTATGGCTGCATATGTTGCAGAAGGAAAACGTATACCTAGAAGAGGTGAAATTGGTTTAACTTCTGAAGAGATTGCTGCATATGAAGCTGTTGGTTATGTTATGAGTGGTAGCAGACATCGACGAATGGAAGCTGTTCGTATCAGAAAAGAGAACCAGATTTATTCTGCTGATGAGAAACGAGCATTGGCTATGTTTAGTAAAGAAGAACGACAAAAAAGAGAAAATCTTATTTTGGGACAATTTAGAGAGATGGTTAATCAAAAATTGGCACAAGAACAAAAAAAGAAAATAACATGATTGTTTTATGTAAAAATAATATATTTGATAATGTATATAAAATTCTTGAATGTATTATAAAATATTATTTATATGTATGTATATATATATATATATATATGTGTATACATACATTAAAATATATTATCTACTTATTATTAGTTAATTATATATCATATAATACATTAATTATTATGAAAAATAAATTAAACAATTTTCATTTTATGAATAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1307#0 TTATACGTAACTGTGTATATGAATATTTTTACCAATTAACAAATGTCGATATTGCTTATT 60
consensus_1307#1 ----------------------GCTCTTCTGCCTGGTGA-AGGTGCTGCTATGGCTG--C 35
** * ** * * * ** * *** ***
consensus_1307#0 ATCTGTAATTAAAACCAGAGGGCAATCTTGTAGTT-TCTTCTAAATTCTGTTTTGTCACA 119
consensus_1307#1 ATATGTTGCAGAAGGAAAACGTATACCTAGAAGAGGTGAAATTGGTTTAACTTCTGAAGA 95
** *** ** * * * * ** * ** * * ** ** * *
consensus_1307#0 AGTTGTAGCATAAACGAACATGAGCAATGG-ATGCACG-TAGAAGAGATAGA-GAACA-A 175
consensus_1307#1 GATTGCTGCATATGAAGCTGTTGGTTATGTTATGAGTGGTAGCAGACATCGACGAATGGA 155
*** ***** * * *** *** * *** *** ** ** *** *
consensus_1307#0 ATTGGATTATGTGGTGTTGACAGAATTTGGGGAAAATCGCCAACACGAATCGAAGATT-- 233
consensus_1307#1 AGCTGTTCGTATCA-GAAAAGAGAACCAGATTTATTCTGCTGATGAGAAACGAGCATTGG 214
* * * * * * * **** * * ** * *** *** ***
consensus_1307#0 CTGACGAAGATGAAGAAATTAATCGATATAAAGACAATATTATGCCAAGAATTAGAAAAA 293
consensus_1307#1 CTATGTTTAGTAAAGAAGAACGACAAAAAAGAGAAAATCTTATTTTGGGA--CAATTTAG 272
** * ***** * * * * *** *** **** ** * *
consensus_1307#0 GGAAACAAGAAATGAAGAAGAAGAAAAGTAAAAAATTAAAAAAAGAAAAGAAAGCTAAGA 353
consensus_1307#1 AGAGATGGTTAATCAAAAATTGGCACAAGAACAAA--AAAAGAAAATAACATGATTGTTT 330
** * *** ** ** * * * ** *** **** ** * ** * *
consensus_1307#0 AGGTAAAAAAGAAAAAATATAAAAAGAAAAAGAAAAAATCAGATAGTAGTTCTGATAGTG 413
consensus_1307#1 TATGTAAAAATAATATATTTGATAATGTATATAAAATTCTTGAATGTATTATAAAATATT 390
***** ** * ** * * ** * * **** ** *** * * *
consensus_1307#0 AATTGGAGGAATTGGAATGGGTAGAAAAAAATGGAATTAATGACAAAGCAAAGATTAAGA 473
consensus_1307#1 ATTTATATGTATGTATATATATATATATATATATGTGTATACATACATTAAAATATATTA 450
* ** * * ** ** ** * * * ** ** * * * *** ** *
consensus_1307#0 AAGGATCAAGTTCAGATGAAAGTGGTGATGAAGGCATAGTAGGCCCAGTTCAGAAACCAC 533
consensus_1307#1 TCTACTTATTATTAGTTAATTATATATCATATAATACATTAA--TTATTATGAAAAATAA 508
* * * ** * * * * * * ** * * *** *
consensus_1307#0 ATGTGACATTATCTGCTAAAGATTTTGGCAAAGCTCTTCTGCCTGGTGAAGGTGCTGCTA 593
consensus_1307#1 ATTAAACAATTTTCATTTTATGAATAAAAAAAA--------------------------- 541
** *** * * * * * ***
consensus_1307#0 T 594
consensus_1307#1 -
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |