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Apis mellifera
cluster # 1316 cluster # 1316       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1316#0 length = 549 sequences # 1  
consensus_1316#1 length = 499 sequences # 1  

consensusID : consensus_1316#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence
                              [TCGACTCGAGATGATACTTGAAAACACGCGGATGAGATTCATAAAGTAGGTGTACAAGTTTGTGCTCATTTTACATTACTGTACAAAAGCATCATATCTTTAGTACAGCAGTGCAATGTATCACTATCCGCAAATAGTTCATCGAATATCTGAAATATTAGTTTTGCTGCCAAAGATTTTGATTATCTGATCCTCATAATCCTCGATATTACGCTTCATAAGTTCCATGCAAGGCCCAAGTAAGCGTTCAAAAGCTTCAACGTCCAAAACTGAAAAAATCATATTTAAAAAAAATATTTTATGATTGCAATTCTTCGTAAACTATATTACACATACCGATACTCTCATGATTATTTATTTATCTATATCCATATAGAAATCAAATGTATAATATTAAATAAATAGATATTTTAATGGATAATATTAGAAGTATATAAAAAGAAAACTTACAGGCCAGTTTTACTTCGCCCACAGCGTAGGCCGAAGCAGCGCGAGGTTTATGTGTCACTAGCGCCAATTCGCCTAAGTATCNACCAGCGGGAACTCTAT]

[+] EMBL BI507295             [TCGACTCGAGATGATACTTGAAAACACGCGGATGAGATTCATAAAGTAGGTGTACAAGTTTGTGCTCATTTTACATTACTGTACAAAAGCATCATATCTTTAGTACAGCAGTGCAATGTATCACTATCCGCAAATAGTTCATCGAATATCTGAAATATTAGTTTTGCTGCCAAAGATTTTGATTATCTGATCCTCATAATCCTCGATATTACGCTTCATAAGTTCCATGCAAGGCCCAAGTAAGCGTTCAAAAGCTTCAACGTCCAAAACTGAAAAAATCATATTTAAAAAAAATATTTTATGATTGCAATTCTTCGTAAACTATATTACACATACCGATACTCTCATGATTATTTATTTATCTATATCCATATAGAAATCAAATGTATAATATTAAATAAATAGATATTTTAATGGATAATATTAGAAGTATATAAAAAGAAAACTTACAGGCCAGTTTTACTTCGCCCACAGCGTAGGCCGAAGCAGCGCGAGGTTTATGTGTCACTAGCGCCAATTCGCCTAAGTATCNACCAGCGGGAACTCTAT]


>consensus_1316#0 TCGACTCGAGATGATACTTGAAAACACGCGGATGAGATTCATAAAGTAGGTGTACAAGTT TGTGCTCATTTTACATTACTGTACAAAAGCATCATATCTTTAGTACAGCAGTGCAATGTA TCACTATCCGCAAATAGTTCATCGAATATCTGAAATATTAGTTTTGCTGCCAAAGATTTT GATTATCTGATCCTCATAATCCTCGATATTACGCTTCATAAGTTCCATGCAAGGCCCAAG TAAGCGTTCAAAAGCTTCAACGTCCAAAACTGAAAAAATCATATTTAAAAAAAATATTTT ATGATTGCAATTCTTCGTAAACTATATTACACATACCGATACTCTCATGATTATTTATTT ATCTATATCCATATAGAAATCAAATGTATAATATTAAATAAATAGATATTTTAATGGATA ATATTAGAAGTATATAAAAAGAAAACTTACAGGCCAGTTTTACTTCGCCCACAGCGTAGG CCGAAGCAGCGCGAGGTTTATGTGTCACTAGCGCCAATTCGCCTAAGTATCNACCAGCGG GAACTCTAT



consensusID : consensus_1316#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence
                              [CGTCTAAGTAAATAGTCATTACGAAAGTCGACTCGAGATGATACTTGAAAACACGCGGATGAGATTCATAAAGTAGGTGTACAAGTTTGTGCTCATTTTACATTACTGTACAAAAGCATCATATCTTTAGTACAGCAGTGCAATGTATCACTATCCGCAAATAGTTCATCGAATATCTGAAATATTAGTTTTGCTGCCAAAGATTTTGATTATCTGATCCTCATAATCCTCGATATTACGCTTCATAAGTTCCATGCAAGGCCCAAGTAAGCGTTCAAAAGCTTCAACGTCCAAAAAGGCCAGTTTTACTTCGCCCACAGCGTAAGCCGAAGCAGCGCGAGGTTTATGTGTCACTAGCGCCAATTCGCCTAAGTATCCACCAGCGGGAACTCTATTAATCTCGATTTCGCGACCATCATCTCCTCTTATGGTGATCCTAACGATACCATCCTCGACAAAATACATTCCATCGGCTGAATCGCCTTGTTTGATGATCTGA]

[+] EMBL BI510784             [CGTCTAAGTAAATAGTCATTACGAAAGTCGACTCGAGATGATACTTGAAAACACGCGGATGAGATTCATAAAGTAGGTGTACAAGTTTGTGCTCATTTTACATTACTGTACAAAAGCATCATATCTTTAGTACAGCAGTGCAATGTATCACTATCCGCAAATAGTTCATCGAATATCTGAAATATTAGTTTTGCTGCCAAAGATTTTGATTATCTGATCCTCATAATCCTCGATATTACGCTTCATAAGTTCCATGCAAGGCCCAAGTAAGCGTTCAAAAGCTTCAACGTCCAAAAAGGCCAGTTTTACTTCGCCCACAGCGTAAGCCGAAGCAGCGCGAGGTTTATGTGTCACTAGCGCCAATTCGCCTAAGTATCCACCAGCGGGAACTCTATTAATCTCGATTTCGCGACCATCATCTCCTCTTATGGTGATCCTAACGATACCATCCTCGACAAAATACATTCCATCGGCTGAATCGCCTTGTTTGATGATCTGA]


>consensus_1316#1 CGTCTAAGTAAATAGTCATTACGAAAGTCGACTCGAGATGATACTTGAAAACACGCGGAT GAGATTCATAAAGTAGGTGTACAAGTTTGTGCTCATTTTACATTACTGTACAAAAGCATC ATATCTTTAGTACAGCAGTGCAATGTATCACTATCCGCAAATAGTTCATCGAATATCTGA AATATTAGTTTTGCTGCCAAAGATTTTGATTATCTGATCCTCATAATCCTCGATATTACG CTTCATAAGTTCCATGCAAGGCCCAAGTAAGCGTTCAAAAGCTTCAACGTCCAAAAAGGC CAGTTTTACTTCGCCCACAGCGTAAGCCGAAGCAGCGCGAGGTTTATGTGTCACTAGCGC CAATTCGCCTAAGTATCCACCAGCGGGAACTCTATTAATCTCGATTTCGCGACCATCATC TCCTCTTATGGTGATCCTAACGATACCATCCTCGACAAAATACATTCCATCGGCTGAATC GCCTTGTTTGATGATCTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1316#0      ---------------------------TCGACTCGAGATGATACTTGAAAACACGCGGAT 33
consensus_1316#1      CGTCTAAGTAAATAGTCATTACGAAAGTCGACTCGAGATGATACTTGAAAACACGCGGAT 60
                                                 *********************************

consensus_1316#0      GAGATTCATAAAGTAGGTGTACAAGTTTGTGCTCATTTTACATTACTGTACAAAAGCATC 93
consensus_1316#1      GAGATTCATAAAGTAGGTGTACAAGTTTGTGCTCATTTTACATTACTGTACAAAAGCATC 120
                      ************************************************************

consensus_1316#0      ATATCTTTAGTACAGCAGTGCAATGTATCACTATCCGCAAATAGTTCATCGAATATCTGA 153
consensus_1316#1      ATATCTTTAGTACAGCAGTGCAATGTATCACTATCCGCAAATAGTTCATCGAATATCTGA 180
                      ************************************************************

consensus_1316#0      AATATTAGTTTTGCTGCCAAAGATTTTGATTATCTGATCCTCATAATCCTCGATATTACG 213
consensus_1316#1      AATATTAGTTTTGCTGCCAAAGATTTTGATTATCTGATCCTCATAATCCTCGATATTACG 240
                      ************************************************************

consensus_1316#0      CTTCATAAGTTCCATGCAAGGCCCAAGTAAGCGTTCAAAAGCTTCAACGTCCAAAACTGA 273
consensus_1316#1      CTTCATAAGTTCCATGCAAGGCCCAAGTAAGCGTTCAAAAGCTTCAACGTCCAAAA--AG 298
                      ********************************************************    

consensus_1316#0      AAAAATCATATTTAAAAAAAATATTTTATGATTGCAATTCTTCGTAAACTATATTACACA 333
consensus_1316#1      GCCAGTTTTACTTCGCCCACAGCGTAAGCCGAAGCAGCGCGAGGTTTA-TGTGTCACTAG 357
                         * *  ** **     * *   *        ***   *   **  * * * * **   

consensus_1316#0      TACCGATACTCTCATGATTATTTATTTAT-----CTATATCCATATAGAAATCAAATGTA 388
consensus_1316#1      CGCCAAT--TCGCCTAAGTATCCACCAGCGGGAACTCTATTAATCTCGATTTCGCGACCA 415
                        ** **  ** * * * ***  *          ** ***  ** * **  **      *

consensus_1316#0      TAATATTAAATAAATAGATATTTTAATGGATAATATTAGAAGTATATAAAAAGAAAACTT 448
consensus_1316#1      TCATCTCCTCTTA-TGGTGATCCTAACG-ATACCATCCTCGAC-----AAAATACATTCC 468
                      * ** *    * * * *  **  *** * ***  **            **** * *    

consensus_1316#0      ACAGGCCAGTTTTACTTCGCCCACAGCGTAGGCCGAAGCAGCGCGAGGTTTATGTGTCAC 508
consensus_1316#1      ATCGGCTGAATCGCCTTGTTTGATGATCTGA----------------------------- 499
                      *  ***    *   ***     *     *                               

consensus_1316#0      TAGCGCCAATTCGCCTAAGTATCNACCAGCGGGAACTCTAT 549
consensus_1316#1      -----------------------------------------
                                                               




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)