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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 877 fasta sequence
[GTCATTCGAGAAATGGTCGTCATTTAACTGTTCCGAAAGAGAATGCTCCACCACCGCCGTCATCAACAATCAATACAGCATTCAATTCTGTATTTTCTGCAGAAATTAAATCATTCTATAAAAGAATGTTTGCAAAACAATAATA-TAAACTCTGAAGCGGGATACGATATGCTACATCGGGCCTCTTCACCTTCTCCAGTGCCATTGATACCTCCGCTTACAATGGCCAGAACTCATATTCGTCGATCACAGGGAAATCATTTAATCACATCATCACAACCACAACCACCGCCAACATTACCTGAAAAACCGAGCCGTGCCAGCGGATCTTCGACAACGATCTCTCAAATTGCGACTAGCAATAATGTGCCACCAGTTCCGCCTCCGTTATCAGTACCACGACCGCCGAAAACAGTGAATAAAGAGCATAACAGGCACGATCATCATTACGAGAACACAATTGTGATACCTGGTACAAGACAACATGTCGTGAGGAACATTAATCTAGAAGCGAATACAGCTCGATTGTCCGCTCTGATAAGAGGTAAGGACGATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATATGAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCCTAGGATTCGCACAAGATGCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAATGGCTTGTGACATACTGCACGAATTTGCTACGAAATCGTCTTGACCAGGAATGAGTACAGGAGAAACATAAAAGCAAAATAAAAAATTATTACATTAATCATATTGAATGATAAAGTTTTTTCAAAATAAAAATTTCTTTCTTTGCATTAGAATTAACATAACATATATAATCTTAATTCTTTTCT]
[-] EMBL BI510356 [GTCATTCGAGAAATGGTCGTCATTTAACTGTTCCGAAAGAGAATGCTCCACCACCGCCGTCATCAACAATCAATACAGCATTCAATTCTGTATTTTCTGCAGAAATTAAATCATTCTATAAAAGAATGTTTGTTTTATTTTATTAGTAAACTCTGAAGCGGGATACGATATGCTACATCGGGCCTCTTCACCTTCTCCAGTGCCATTGATACCTCCGCTTACAATGGCCAGAACTCA ]
[+] EMBL BI506885 [ aCAAAACAATAATA TAAACTCTGAAGCGGGATACGATATGCTACATCGGGCCTCTTCACCTTCTCCAGTGCCATTGATACCTCCGCTTACAATGGCCAGAACTCATATTCGTCGATCACAGGGAAATCATTTAATCACATCATCACAACCACAACCACCGCCAACATTACCTGAAAAACCGAGCCGTGCCAGCGGATCTTCGACAACGATCTCTCAAATTGCGACTAGCAATAATGTGCCACCAGTTCCGCCTCCGTTATCAGTACCACGACCGCCGAAAACAGTGAATAAAGAGCATAACAGGCACGATCATCATTACGAGAACACAATTGTGATACCTGGTACAAGACAACATGTCGTGAGGAACATTAATCTAGAAGCGAATACAGCTCGATTGTCCGCTCTGATAAGAGGTAAGGACGATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATATGAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCCTAGGATTCGCACAAGATGCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAATGGCTTGTGACATACTGCACGAATTTGCTACGAAATCGTCTTGACCAGGATTAAATACCGAAGAATCATAAcc ]
[+] EMBL BI510030 [ TCTTCGACAACGATCTCTCAAATTGCGACTAGCAATAATGTGCCACCAGTTCCGCCTCCGTTATCAGTACCACGACCGCCGAAAACAGTGAATAAAGAGCATAACAGGCACGATCATCATTACGAGAACACAATTGTGATACCTGGTACAAGACAACATGTCGTGAGGAACATTAATCTAGAAGCGAATACAGCTCGATTGTCCGCTCTGATAAGAGGTAAGGACGATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATATGAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCCTAGGATTCGCACAAGATGCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAATGGCTTGTGACATACTGCACGAATTTGCTACGAAATCGTCTTGACCAGGTATGCGTATAAGTCAAACCTAAAAGCAAAATAAAAAATTATTACATTAATCATATTGAATGATAAAGTTTTTTCAAAATAAAAATTTCTTTCTTTGCATTAGAATTAACATAACATATATAATCTTAATTCTTTTCT]
consensusID : consensus_133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 564 fasta sequence
[GCTTATGAATACATGCAATCTATATATACAGATTGTAAAGGTACACCACATATACCAAAAGTTTATTGGGAAGATATAGGTGGATTAATAAACTTGAAACATGAAATAACGCGACGAATTCAGTTACCTTTAATGAACACTTTAGAATTCGGACAATCTGGTCTTCTTTTATATGGACCACCAGGAACTGGAAAAACACTTCTTGCTAAAGCTGTAGCAACAGAGTTTCAACTTCATTTTTTATCAGTTAAAGGCTCCGAAATGTTAAATATGTATGTTGGTCAAAGTGAGAAAAATGTTAGACAAGTGTTCGAGCGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCTAATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTCGCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGACCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGTCGATTCGATAAATTATTATACAATAACATTCCT]
[+] EMBL BI505862 [GCTTATGAATACATGCAATCTATATATACAGATTGTAAAGGTACACCACATATACCAAAAGTTTATTGGGAAGATATAGGTGGATTAATAAACTTGAAACATGAAATAACGCGACGAATTCAGTTACCTTTAATGAACACTTTAGAATTCGGACAATCTGGTCTTCTTTTATATGGACCACCAGGAACTGGAAAAACACTTCTTGCTAAAGCTGTAGCAACAGAGTTTCAACTTCATTTTTTATCAGTTAAAGGCTCCGAAATGTTAAATATGTATGTTGGTCAAAGTGAGAAAAATGTTAGACAAGTGTTCGAGCGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCTAATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTCGCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGACCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGTCGATTCGATAAATTATTATACAATAACATTCCT]
[+] EMBL BI506221 [GCTTATGAATACATGCAATCTATATATACAGATTGTAAAGGTACACCACATATACCAAAAGTTTATTGGGAAGATATAGGTGGATTAATAAACTTGAAACATGAAATAACGCGACGAATTCAGTTACCTTTAATGAACACTTTAGAATTCGGACAATCTGGTCTTCTTTTATATGGACCACCAGGAACTGGAAAAACACTTCTTGCTAAAGCTGTAGCAACAGAGTTTCAACTTCATTTTTTATCAGTTAAAGGCTCCGAAATGTTAAATATGTATGTTGGTCAAAGTGAGAAAAATGTTAGACAAGTGTTCGAGCGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCTAATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTCGCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGACCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGTCGATTCGATAAATTATTATACAATAACATT ]
consensusID : consensus_133#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence
[CCTGGTACAAGACAACATGTCGTGAGGAACATTAATCTAGAAGCGAATACAGCTCGATTGTCCGCTCTGATAAGAGGTAAGGACGATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATATGAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCCTAGGATTCGCACAAGATGCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAATGGCTTGTGACATACTGCACGAATTTGCTACGAAATCGTCTTGACCAGGTATGCGTATAAGTCAAACCTTGTCTAACATTTTTCTCACTTTGACCAACATACATATTTAACATTTCGGAGCCTTTAACTGATAAAAAATGAAGTTGAAACTCTGTTGCTACAGCTTTAGCAAGAAGTGTTTTTCCAGTTCCTGGTGGTCCATATAAAAGAAGACCAGATTGTCCGAATTCTAAAGTGTTCATTAAAGGTAACTGAATTCGTCGCGT]
[-] EMBL BI507012 [CCTGGTACAAGACAACATGTCGTGAGGAACATTAATCTAGAAGCGAATACAGCTCGATTGTCCGCTCTGATAAGAGGTAAGGACGATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATATGAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCCTAGGATTCGCACAAGATGCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAATGGCTTGTGACATACTGCACGAATTTGCTACGAAATCGTCTTGACCAGGTATGCGTATAAGTCAAACCTTGTCTAACATTTTTCTCACTTTGACCAACATACATATTTAACATTTCGGAGCCTTTAACTGATAAAAAATGAAGTTGAAACTCTGTTGCTACAGCTTTAGCAAGAAGTGTTTTTCCAGTTCCTGGTGGTCCATATAAAAGAAGACCAGATTGTCCGAATTCTAAAGTGTTCATTAAAGGTAACTGAATTCGTCGCGT]
consensusID : consensus_133#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence
[TAAGATAATGAAATATATATTAAATATATATCTTAAAAATAAAAAATACAATATCGTAGTGTTCGAGCGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCTAATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTCGCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGACCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGTCGATTCGATAAATTATTATACGTAGGGATTCATTNNNATCGTGATTCGCAATTTAATGTATTAAAGGCATTAACTCGTAAATTTAAATTCCGTGAAAATGGAAAAGAATTAGAGAAGTTTGTATCTCAATTGCCCAATCATACGACTGGG]
[+] EMBL BI515168 [TAAGATAATGAAATATATATTAAATATATATCTTAAAAATAAAAAATACAATATCGTAGTGTTCGAGCGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCTAATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTCGCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGACCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGTCGATTCGATAAATTATTATACGTAGGGATTCATTNNNATCGTGATTCGCAATTTAATGTATTAAAGGCATTAACTCGTAAATTTAAATTCCGTGAAAATGGAAAAGAATTAGAGAAGTTTGTATCTCAATTGCCCAATCATACGACTGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_133#1 ------------------------------------------------------------
consensus_133#3 ------------------------------------------------------------
consensus_133#0 GTCATTCGAGAAATGGTCGTCATTTAACTGTTCCGAAAGAGAATGCTCCACCACCGCCGT 60
consensus_133#2 ------------------------------------------------------------
consensus_133#1 ------------------------------------------------------------
consensus_133#3 ------------------------------------------------------------
consensus_133#0 CATCAACAATCAATACAGCATTCAATTCTGTATTTTCTGCAGAAATTAAATCATTCTATA 120
consensus_133#2 ------------------------------------------------------------
consensus_133#1 ------------------------------------------------------------
consensus_133#3 ------------------------------------------------------------
consensus_133#0 AAAGAATGTTTGCAAAACAATAATATAAACTCTGAAGCGGGATACGATATGCTACATCGG 180
consensus_133#2 ------------------------------------------------------------
consensus_133#1 ---------------------------------------------GCTTATGAATACATG 15
consensus_133#3 ------------------------------------------------------------
consensus_133#0 GCCTCTTCACCTTCTCCAGTGCCATTGATACCTCCGCTTACAATGGCCAGAACTCATATT 240
consensus_133#2 ------------------------------------------------------------
consensus_133#1 CAATCTATATATACAGATTGTAAAGGTACACCACATATACCAAAAGTTTATTGGGAAGAT 75
consensus_133#3 ------------------------------------------------------------
consensus_133#0 CGTCGATCACAGGGAAATCATTTAATCACATCATCACAACCACAACCACCGCCAACATTA 300
consensus_133#2 ------------------------------------------------------------
consensus_133#1 ATAGGTGGATTAATAAACTTGAAACATGAAATAACGCGACGAATTCAGTTACCTTTAATG 135
consensus_133#3 ------------------------------------------------------------
consensus_133#0 CCTGAAAAACCGAGCCGTGCCAGCGGATCTTCGACAACGATCTCTCAAATTGCGACTAGC 360
consensus_133#2 ------------------------------------------------------------
consensus_133#1 AACACTTTAGAATTCGGACAATCTGGTCTTCTTTTATATGGACCACCAGGAACTGGAAAA 195
consensus_133#3 ------------------------------------------------------------
consensus_133#0 AATAATGTGCCACCAGTTCCGCCTCCGTTATCAGTACCACGACCGCCGAAAACAGTGAAT 420
consensus_133#2 ------------------------------------------------------------
consensus_133#1 ACACTTCTTGCTAAAGCTGTAGCAACAGAGTTTCAACTTCATTTTTTATCAGTTAAAGGC 255
consensus_133#3 ------------------------------------------------TAAGATAATGAA 12
consensus_133#0 AAAGAGCATAACAGGCACGATCATCATTACGAGAACACAATTGTGATACCTGGTACAAGA 480
consensus_133#2 ------------------------------------------------CCTGGTACAAGA 12
* **
consensus_133#1 TCCGAAATGTTAAATATGTATGTTGGTCAAAGTGAGAAAAATGTTAGACAAGTGTTCGAG 315
consensus_133#3 AT--ATATATTAAATATATATCTTA---AAAATAAAAAATACAATATCGTAGTGTTCGAG 67
consensus_133#0 CA--ACATGTCGTG-AGGAACATTA---ATCTAGAAGCGAATACAGCTCGATTGTCCGCT 534
consensus_133#2 CA--ACATGTCGTG-AGGAACATTA---ATCTAGAAGCGAATACAGCTCGATTGTCCGCT 66
* ** * * * ** * * * * *** **
consensus_133#1 CGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCT 375
consensus_133#3 CGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCT 127
consensus_133#0 CTGATAAGAG--GTAAGGACG-ATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATAT 591
consensus_133#2 CTGATAAGAG--GTAAGGACG-ATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATAT 123
* ***** * * * ** * * * ** * ** ** ** **** *
consensus_133#1 AATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTC 435
consensus_133#3 AATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTC 187
consensus_133#0 GAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCC---TAGGATTCGCACAAGAT 648
consensus_133#2 GAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCC---TAGGATTCGCACAAGAT 180
* ** * *** *** * * * * ** *
consensus_133#1 GCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGA 495
consensus_133#3 GCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGA 247
consensus_133#0 GCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAAT---GGCTTGTGACATA 705
consensus_133#2 GCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAAT---GGCTTGTGACATA 237
** * *** * ** * * * * ** ** *** *** *** *
consensus_133#1 CCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGT---CGATTCGATAAATTATTATAC 552
consensus_133#3 CCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGT---CGATTCGATAAATTATTATAC 304
consensus_133#0 CTGCACGAATTTGCTACGAAATCGTCTTGACCAGGAATGAGTACAGGAGAAACAT----- 760
consensus_133#2 CTGCACGAATTTGCTACGAAATCGTCTTGACCAGGTATGCGTATAAGTCAAACCTTGTCT 297
* * *** * * * **** ** * ** *
consensus_133#1 AATAACATTCCT------------------------------------------------ 564
consensus_133#3 GTAGGGATTCATTNNNATCGTGATTCGCA-ATTTAATGTATTAAAGGCATTAACTCGT-- 361
consensus_133#0 AAAAG------CAAAATAAAAAATTATTACATTAATCATATTGAATGATAAAGTTTTTTC 814
consensus_133#2 AACATTTTTCTCACTTTGACCAACATACATATTTAACATTTCGGAGCCTTTAACTGATAA 357
consensus_133#1 ------------------------------------------------------------
consensus_133#3 -AAATTTAAATTCCGTGAAAATGGAAAAGAATTAGAGAAGTTTGTAT--CTCAATTGCCC 418
consensus_133#0 AAAATAAAAATTTCTTTCT-TTGCATTAGAATTAACATAACATATATAATCTTAATTCTT 873
consensus_133#2 AAAATGAAGTTGAAACTCTGTTGCTACAGCTTTAGCAAGAAGTGTTT--TTCCAGTTCCT 415
consensus_133#1 ------------------------------------------------------------
consensus_133#3 AATCATACGACTGGG--------------------------------------------- 433
consensus_133#0 TTCT-------------------------------------------------------- 877
consensus_133#2 GGTGGTCCATATAAAAGAAGACCAGATTGTCCGAATTCTAAAGTGTTCATTAAAGGTAAC 475
consensus_133#1 --------------
consensus_133#3 --------------
consensus_133#0 --------------
consensus_133#2 TGAATTCGTCGCGT 489
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |