These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 877 fasta sequence [GTCATTCGAGAAATGGTCGTCATTTAACTGTTCCGAAAGAGAATGCTCCACCACCGCCGTCATCAACAATCAATACAGCATTCAATTCTGTATTTTCTGCAGAAATTAAATCATTCTATAAAAGAATGTTTGCAAAACAATAATA-TAAACTCTGAAGCGGGATACGATATGCTACATCGGGCCTCTTCACCTTCTCCAGTGCCATTGATACCTCCGCTTACAATGGCCAGAACTCATATTCGTCGATCACAGGGAAATCATTTAATCACATCATCACAACCACAACCACCGCCAACATTACCTGAAAAACCGAGCCGTGCCAGCGGATCTTCGACAACGATCTCTCAAATTGCGACTAGCAATAATGTGCCACCAGTTCCGCCTCCGTTATCAGTACCACGACCGCCGAAAACAGTGAATAAAGAGCATAACAGGCACGATCATCATTACGAGAACACAATTGTGATACCTGGTACAAGACAACATGTCGTGAGGAACATTAATCTAGAAGCGAATACAGCTCGATTGTCCGCTCTGATAAGAGGTAAGGACGATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATATGAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCCTAGGATTCGCACAAGATGCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAATGGCTTGTGACATACTGCACGAATTTGCTACGAAATCGTCTTGACCAGGAATGAGTACAGGAGAAACATAAAAGCAAAATAAAAAATTATTACATTAATCATATTGAATGATAAAGTTTTTTCAAAATAAAAATTTCTTTCTTTGCATTAGAATTAACATAACATATATAATCTTAATTCTTTTCT] [-] EMBL BI510356 [GTCATTCGAGAAATGGTCGTCATTTAACTGTTCCGAAAGAGAATGCTCCACCACCGCCGTCATCAACAATCAATACAGCATTCAATTCTGTATTTTCTGCAGAAATTAAATCATTCTATAAAAGAATGTTTGTTTTATTTTATTAGTAAACTCTGAAGCGGGATACGATATGCTACATCGGGCCTCTTCACCTTCTCCAGTGCCATTGATACCTCCGCTTACAATGGCCAGAACTCA ] [+] EMBL BI506885 [ aCAAAACAATAATA TAAACTCTGAAGCGGGATACGATATGCTACATCGGGCCTCTTCACCTTCTCCAGTGCCATTGATACCTCCGCTTACAATGGCCAGAACTCATATTCGTCGATCACAGGGAAATCATTTAATCACATCATCACAACCACAACCACCGCCAACATTACCTGAAAAACCGAGCCGTGCCAGCGGATCTTCGACAACGATCTCTCAAATTGCGACTAGCAATAATGTGCCACCAGTTCCGCCTCCGTTATCAGTACCACGACCGCCGAAAACAGTGAATAAAGAGCATAACAGGCACGATCATCATTACGAGAACACAATTGTGATACCTGGTACAAGACAACATGTCGTGAGGAACATTAATCTAGAAGCGAATACAGCTCGATTGTCCGCTCTGATAAGAGGTAAGGACGATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATATGAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCCTAGGATTCGCACAAGATGCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAATGGCTTGTGACATACTGCACGAATTTGCTACGAAATCGTCTTGACCAGGATTAAATACCGAAGAATCATAAcc ] [+] EMBL BI510030 [ TCTTCGACAACGATCTCTCAAATTGCGACTAGCAATAATGTGCCACCAGTTCCGCCTCCGTTATCAGTACCACGACCGCCGAAAACAGTGAATAAAGAGCATAACAGGCACGATCATCATTACGAGAACACAATTGTGATACCTGGTACAAGACAACATGTCGTGAGGAACATTAATCTAGAAGCGAATACAGCTCGATTGTCCGCTCTGATAAGAGGTAAGGACGATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATATGAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCCTAGGATTCGCACAAGATGCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAATGGCTTGTGACATACTGCACGAATTTGCTACGAAATCGTCTTGACCAGGTATGCGTATAAGTCAAACCTAAAAGCAAAATAAAAAATTATTACATTAATCATATTGAATGATAAAGTTTTTTCAAAATAAAAATTTCTTTCTTTGCATTAGAATTAACATAACATATATAATCTTAATTCTTTTCT] consensusID : consensus_133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 564 fasta sequence [GCTTATGAATACATGCAATCTATATATACAGATTGTAAAGGTACACCACATATACCAAAAGTTTATTGGGAAGATATAGGTGGATTAATAAACTTGAAACATGAAATAACGCGACGAATTCAGTTACCTTTAATGAACACTTTAGAATTCGGACAATCTGGTCTTCTTTTATATGGACCACCAGGAACTGGAAAAACACTTCTTGCTAAAGCTGTAGCAACAGAGTTTCAACTTCATTTTTTATCAGTTAAAGGCTCCGAAATGTTAAATATGTATGTTGGTCAAAGTGAGAAAAATGTTAGACAAGTGTTCGAGCGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCTAATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTCGCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGACCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGTCGATTCGATAAATTATTATACAATAACATTCCT] [+] EMBL BI505862 [GCTTATGAATACATGCAATCTATATATACAGATTGTAAAGGTACACCACATATACCAAAAGTTTATTGGGAAGATATAGGTGGATTAATAAACTTGAAACATGAAATAACGCGACGAATTCAGTTACCTTTAATGAACACTTTAGAATTCGGACAATCTGGTCTTCTTTTATATGGACCACCAGGAACTGGAAAAACACTTCTTGCTAAAGCTGTAGCAACAGAGTTTCAACTTCATTTTTTATCAGTTAAAGGCTCCGAAATGTTAAATATGTATGTTGGTCAAAGTGAGAAAAATGTTAGACAAGTGTTCGAGCGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCTAATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTCGCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGACCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGTCGATTCGATAAATTATTATACAATAACATTCCT] [+] EMBL BI506221 [GCTTATGAATACATGCAATCTATATATACAGATTGTAAAGGTACACCACATATACCAAAAGTTTATTGGGAAGATATAGGTGGATTAATAAACTTGAAACATGAAATAACGCGACGAATTCAGTTACCTTTAATGAACACTTTAGAATTCGGACAATCTGGTCTTCTTTTATATGGACCACCAGGAACTGGAAAAACACTTCTTGCTAAAGCTGTAGCAACAGAGTTTCAACTTCATTTTTTATCAGTTAAAGGCTCCGAAATGTTAAATATGTATGTTGGTCAAAGTGAGAAAAATGTTAGACAAGTGTTCGAGCGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCTAATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTCGCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGACCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGTCGATTCGATAAATTATTATACAATAACATT ] consensusID : consensus_133#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [CCTGGTACAAGACAACATGTCGTGAGGAACATTAATCTAGAAGCGAATACAGCTCGATTGTCCGCTCTGATAAGAGGTAAGGACGATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATATGAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCCTAGGATTCGCACAAGATGCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAATGGCTTGTGACATACTGCACGAATTTGCTACGAAATCGTCTTGACCAGGTATGCGTATAAGTCAAACCTTGTCTAACATTTTTCTCACTTTGACCAACATACATATTTAACATTTCGGAGCCTTTAACTGATAAAAAATGAAGTTGAAACTCTGTTGCTACAGCTTTAGCAAGAAGTGTTTTTCCAGTTCCTGGTGGTCCATATAAAAGAAGACCAGATTGTCCGAATTCTAAAGTGTTCATTAAAGGTAACTGAATTCGTCGCGT] [-] EMBL BI507012 [CCTGGTACAAGACAACATGTCGTGAGGAACATTAATCTAGAAGCGAATACAGCTCGATTGTCCGCTCTGATAAGAGGTAAGGACGATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATATGAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCCTAGGATTCGCACAAGATGCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAATGGCTTGTGACATACTGCACGAATTTGCTACGAAATCGTCTTGACCAGGTATGCGTATAAGTCAAACCTTGTCTAACATTTTTCTCACTTTGACCAACATACATATTTAACATTTCGGAGCCTTTAACTGATAAAAAATGAAGTTGAAACTCTGTTGCTACAGCTTTAGCAAGAAGTGTTTTTCCAGTTCCTGGTGGTCCATATAAAAGAAGACCAGATTGTCCGAATTCTAAAGTGTTCATTAAAGGTAACTGAATTCGTCGCGT] consensusID : consensus_133#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [TAAGATAATGAAATATATATTAAATATATATCTTAAAAATAAAAAATACAATATCGTAGTGTTCGAGCGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCTAATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTCGCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGACCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGTCGATTCGATAAATTATTATACGTAGGGATTCATTNNNATCGTGATTCGCAATTTAATGTATTAAAGGCATTAACTCGTAAATTTAAATTCCGTGAAAATGGAAAAGAATTAGAGAAGTTTGTATCTCAATTGCCCAATCATACGACTGGG] [+] EMBL BI515168 [TAAGATAATGAAATATATATTAAATATATATCTTAAAAATAAAAAATACAATATCGTAGTGTTCGAGCGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCTAATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTCGCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGACCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGTCGATTCGATAAATTATTATACGTAGGGATTCATTNNNATCGTGATTCGCAATTTAATGTATTAAAGGCATTAACTCGTAAATTTAAATTCCGTGAAAATGGAAAAGAATTAGAGAAGTTTGTATCTCAATTGCCCAATCATACGACTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_133#1 ------------------------------------------------------------ consensus_133#3 ------------------------------------------------------------ consensus_133#0 GTCATTCGAGAAATGGTCGTCATTTAACTGTTCCGAAAGAGAATGCTCCACCACCGCCGT 60 consensus_133#2 ------------------------------------------------------------ consensus_133#1 ------------------------------------------------------------ consensus_133#3 ------------------------------------------------------------ consensus_133#0 CATCAACAATCAATACAGCATTCAATTCTGTATTTTCTGCAGAAATTAAATCATTCTATA 120 consensus_133#2 ------------------------------------------------------------ consensus_133#1 ------------------------------------------------------------ consensus_133#3 ------------------------------------------------------------ consensus_133#0 AAAGAATGTTTGCAAAACAATAATATAAACTCTGAAGCGGGATACGATATGCTACATCGG 180 consensus_133#2 ------------------------------------------------------------ consensus_133#1 ---------------------------------------------GCTTATGAATACATG 15 consensus_133#3 ------------------------------------------------------------ consensus_133#0 GCCTCTTCACCTTCTCCAGTGCCATTGATACCTCCGCTTACAATGGCCAGAACTCATATT 240 consensus_133#2 ------------------------------------------------------------ consensus_133#1 CAATCTATATATACAGATTGTAAAGGTACACCACATATACCAAAAGTTTATTGGGAAGAT 75 consensus_133#3 ------------------------------------------------------------ consensus_133#0 CGTCGATCACAGGGAAATCATTTAATCACATCATCACAACCACAACCACCGCCAACATTA 300 consensus_133#2 ------------------------------------------------------------ consensus_133#1 ATAGGTGGATTAATAAACTTGAAACATGAAATAACGCGACGAATTCAGTTACCTTTAATG 135 consensus_133#3 ------------------------------------------------------------ consensus_133#0 CCTGAAAAACCGAGCCGTGCCAGCGGATCTTCGACAACGATCTCTCAAATTGCGACTAGC 360 consensus_133#2 ------------------------------------------------------------ consensus_133#1 AACACTTTAGAATTCGGACAATCTGGTCTTCTTTTATATGGACCACCAGGAACTGGAAAA 195 consensus_133#3 ------------------------------------------------------------ consensus_133#0 AATAATGTGCCACCAGTTCCGCCTCCGTTATCAGTACCACGACCGCCGAAAACAGTGAAT 420 consensus_133#2 ------------------------------------------------------------ consensus_133#1 ACACTTCTTGCTAAAGCTGTAGCAACAGAGTTTCAACTTCATTTTTTATCAGTTAAAGGC 255 consensus_133#3 ------------------------------------------------TAAGATAATGAA 12 consensus_133#0 AAAGAGCATAACAGGCACGATCATCATTACGAGAACACAATTGTGATACCTGGTACAAGA 480 consensus_133#2 ------------------------------------------------CCTGGTACAAGA 12 * ** consensus_133#1 TCCGAAATGTTAAATATGTATGTTGGTCAAAGTGAGAAAAATGTTAGACAAGTGTTCGAG 315 consensus_133#3 AT--ATATATTAAATATATATCTTA---AAAATAAAAAATACAATATCGTAGTGTTCGAG 67 consensus_133#0 CA--ACATGTCGTG-AGGAACATTA---ATCTAGAAGCGAATACAGCTCGATTGTCCGCT 534 consensus_133#2 CA--ACATGTCGTG-AGGAACATTA---ATCTAGAAGCGAATACAGCTCGATTGTCCGCT 66 * ** * * * ** * * * * *** ** consensus_133#1 CGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCT 375 consensus_133#3 CGAGCAAGAGCAGCAGTGCCGTGTATAATATTTTTTGACGAATTGGATTCATTAGCACCT 127 consensus_133#0 CTGATAAGAG--GTAAGGACG-ATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATAT 591 consensus_133#2 CTGATAAGAG--GTAAGGACG-ATCCCACAGGTTCTTCTAAACCTGAATCCGCAGCATAT 123 * ***** * * * ** * * * ** * ** ** ** **** * consensus_133#1 AATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTC 435 consensus_133#3 AATCGCGGACGAAGTGGTGATAGCGGAGGTGTAATGGATCGTGTGGTATCTCAATTGCTC 187 consensus_133#0 GAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCC---TAGGATTCGCACAAGAT 648 consensus_133#2 GAGAACGTGAATGTCGAACATATTTCCAAGTTAACAGCCC---TAGGATTCGCACAAGAT 180 * ** * *** *** * * * * ** * consensus_133#1 GCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGA 495 consensus_133#3 GCAGAAATGGATGGTCTTGACTATTCAAATAATATATTTATAATAGGAGCTACAAACAGA 247 consensus_133#0 GCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAAT---GGCTTGTGACATA 705 consensus_133#2 GCTGTAATTAGAGCCCTCGGTATTACTAGGAACGATCTTGAAAT---GGCTTGTGACATA 237 ** * *** * ** * * * * ** ** *** *** *** * consensus_133#1 CCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGT---CGATTCGATAAATTATTATAC 552 consensus_133#3 CCAGATCTCATTGATCCTGCCCTTCTTCGACCTGGT---CGATTCGATAAATTATTATAC 304 consensus_133#0 CTGCACGAATTTGCTACGAAATCGTCTTGACCAGGAATGAGTACAGGAGAAACAT----- 760 consensus_133#2 CTGCACGAATTTGCTACGAAATCGTCTTGACCAGGTATGCGTATAAGTCAAACCTTGTCT 297 * * *** * * * **** ** * ** * consensus_133#1 AATAACATTCCT------------------------------------------------ 564 consensus_133#3 GTAGGGATTCATTNNNATCGTGATTCGCA-ATTTAATGTATTAAAGGCATTAACTCGT-- 361 consensus_133#0 AAAAG------CAAAATAAAAAATTATTACATTAATCATATTGAATGATAAAGTTTTTTC 814 consensus_133#2 AACATTTTTCTCACTTTGACCAACATACATATTTAACATTTCGGAGCCTTTAACTGATAA 357 consensus_133#1 ------------------------------------------------------------ consensus_133#3 -AAATTTAAATTCCGTGAAAATGGAAAAGAATTAGAGAAGTTTGTAT--CTCAATTGCCC 418 consensus_133#0 AAAATAAAAATTTCTTTCT-TTGCATTAGAATTAACATAACATATATAATCTTAATTCTT 873 consensus_133#2 AAAATGAAGTTGAAACTCTGTTGCTACAGCTTTAGCAAGAAGTGTTT--TTCCAGTTCCT 415 consensus_133#1 ------------------------------------------------------------ consensus_133#3 AATCATACGACTGGG--------------------------------------------- 433 consensus_133#0 TTCT-------------------------------------------------------- 877 consensus_133#2 GGTGGTCCATATAAAAGAAGACCAGATTGTCCGAATTCTAAAGTGTTCATTAAAGGTAAC 475 consensus_133#1 -------------- consensus_133#3 -------------- consensus_133#0 -------------- consensus_133#2 TGAATTCGTCGCGT 489 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |