cluster # 1334

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1334 cluster # 1334 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1334#0 length = 595 sequences # 1

consensus_1334#1 length = 499 sequences # 1

consensusID : consensus_1334#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [ATCCTGGATTTCGTGGTTTTGCAATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGAAGATTATATCCAGGATAAGTTTAATTTAACCGGACTAAATGAACAAGTACCACATTATAGGCAAGCATTAGATATGATTCTTGATCTTGAACCTGATGATGAATTGGATGGCCATCCAAACCAATCTGAATTAATTGAACAAGCAGCAGAACTACTTTATGGATTAATTCATGCACGTTACATTCTTACTAATCGTGGCATTGCTCAAATGATTGAAAAATATCAATCCGGAGATTTTGGTTATTGTCCACGTGTATATTGTGAATCCCAACCTATGTTGCCTCTGGGTCTTAGTGATGTTCCTGGAGAAGCAATGGTTAAAAGTTATTGTCCCAAATGTATGGATGTTTATACACCAAAAAGCTCTAGACATCATCACACAGATGGAGCATATTTTGGAACAGGATTTCCCCATATGCTTTTTATGGTTCATCCAGAATATAGACCCAAACGTCCAACAAATCAGTTTGTACCTAGGTTATATGGCTTTAAAATTCATCCTCTAGCATATCAGTTTCAACAACAATCTGCATCA]

[+] EMBL BI507141             [ATCCTGGATTTCGTGGTTTTGCAATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGAAGATTATATCCAGGATAAGTTTAATTTAACCGGACTAAATGAACAAGTACCACATTATAGGCAAGCATTAGATATGATTCTTGATCTTGAACCTGATGATGAATTGGATGGCCATCCAAACCAATCTGAATTAATTGAACAAGCAGCAGAACTACTTTATGGATTAATTCATGCACGTTACATTCTTACTAATCGTGGCATTGCTCAAATGATTGAAAAATATCAATCCGGAGATTTTGGTTATTGTCCACGTGTATATTGTGAATCCCAACCTATGTTGCCTCTGGGTCTTAGTGATGTTCCTGGAGAAGCAATGGTTAAAAGTTATTGTCCCAAATGTATGGATGTTTATACACCAAAAAGCTCTAGACATCATCACACAGATGGAGCATATTTTGGAACAGGATTTCCCCATATGCTTTTTATGGTTCATCCAGAATATAGACCCAAACGTCCAACAAATCAGTTTGTACCTAGGTTATATGGCTTTAAAATTCATCCTCTAGCATATCAGTTTCAACAACAATCTGCATCA]




>consensus_1334#0
ATCCTGGATTTCGTGGTTTTGCAATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGA
AGATTATATCCAGGATAAGTTTAATTTAACCGGACTAAATGAACAAGTACCACATTATAG
GCAAGCATTAGATATGATTCTTGATCTTGAACCTGATGATGAATTGGATGGCCATCCAAA
CCAATCTGAATTAATTGAACAAGCAGCAGAACTACTTTATGGATTAATTCATGCACGTTA
CATTCTTACTAATCGTGGCATTGCTCAAATGATTGAAAAATATCAATCCGGAGATTTTGG
TTATTGTCCACGTGTATATTGTGAATCCCAACCTATGTTGCCTCTGGGTCTTAGTGATGT
TCCTGGAGAAGCAATGGTTAAAAGTTATTGTCCCAAATGTATGGATGTTTATACACCAAA
AAGCTCTAGACATCATCACACAGATGGAGCATATTTTGGAACAGGATTTCCCCATATGCT
TTTTATGGTTCATCCAGAATATAGACCCAAACGTCCAACAAATCAGTTTGTACCTAGGTT
ATATGGCTTTAAAATTCATCCTCTAGCATATCAGTTTCAACAACAATCTGCATCA

consensusID : consensus_1334#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [ACGAAGCAGCAATGACCACGGAAACCTCCCCATACCTAGCCTTTCGTTGGCGCCTTTCTAACCAATTGCCAGGCGTACACTAAGCACTGACGTCGCATATATGTGTGCATAATATACGGAGATTCGAGAACTTTTTTGCGCACGTACCTTTACGTATTATATACGAATCCTGCGCTCTTTTATCGCGGTGATCACTTTTATTCTATATATCGATAGAAAAATATTTCTTCCATTTTTTTATTCATAGGAAAATGAGCAGTTCTGAGGAGGTATCCTGGATTTCGTGGTTTTGCAATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGAAGATTATATCCAGGATAAGTTTAATTTAACCGGACTAAATGAACAAGTACCACATTATAGGCAAGCATTAGATATGATTCTTGATCTTGAACCTGCTTNNNTTTATTCTGTAGATGATGAATTGGATGGCCATCCAAACCAATCTGAATTAATTGAACAAGCAGCAGA]

[+] EMBL BI515689             [ACGAAGCAGCAATGACCACGGAAACCTCCCCATACCTAGCCTTTCGTTGGCGCCTTTCTAACCAATTGCCAGGCGTACACTAAGCACTGACGTCGCATATATGTGTGCATAATATACGGAGATTCGAGAACTTTTTTGCGCACGTACCTTTACGTATTATATACGAATCCTGCGCTCTTTTATCGCGGTGATCACTTTTATTCTATATATCGATAGAAAAATATTTCTTCCATTTTTTTATTCATAGGAAAATGAGCAGTTCTGAGGAGGTATCCTGGATTTCGTGGTTTTGCAATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGAAGATTATATCCAGGATAAGTTTAATTTAACCGGACTAAATGAACAAGTACCACATTATAGGCAAGCATTAGATATGATTCTTGATCTTGAACCTGCTTNNNTTTATTCTGTAGATGATGAATTGGATGGCCATCCAAACCAATCTGAATTAATTGAACAAGCAGCAGA]




>consensus_1334#1
ACGAAGCAGCAATGACCACGGAAACCTCCCCATACCTAGCCTTTCGTTGGCGCCTTTCTA
ACCAATTGCCAGGCGTACACTAAGCACTGACGTCGCATATATGTGTGCATAATATACGGA
GATTCGAGAACTTTTTTGCGCACGTACCTTTACGTATTATATACGAATCCTGCGCTCTTT
TATCGCGGTGATCACTTTTATTCTATATATCGATAGAAAAATATTTCTTCCATTTTTTTA
TTCATAGGAAAATGAGCAGTTCTGAGGAGGTATCCTGGATTTCGTGGTTTTGCAATCTCA
GGGGAAATGAATTTTTTTGTGAAGTTGATGAAGATTATATCCAGGATAAGTTTAATTTAA
CCGGACTAAATGAACAAGTACCACATTATAGGCAAGCATTAGATATGATTCTTGATCTTG
AACCTGCTTNNNTTTATTCTGTAGATGATGAATTGGATGGCCATCCAAACCAATCTGAAT
TAATTGAACAAGCAGCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1334#0      ATCCTGGATTTCGTGGTTTTGCAATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGA 60
consensus_1334#1      --------------------------------------------------------ACGA 4
                                                                              * **

consensus_1334#0      AG--ATTATATCCAGGATAAGTTTAATTTAACCGGACTAAATGAACAAGTACCACATTAT 118
consensus_1334#1      AGCAGCAATGACCACGGAAACCTCCCCATACCTAGCCT---TTCGTTGGCGCC--TTTCT 59
                      **     **  *** *  **  *     ** *  * **   *      *  **   ** *

consensus_1334#0      AGGCAAGCATTAGATATGATTCTTGATCTTGAACCTGATGATGAATTGGATGGCCATCCA 178
consensus_1334#1      AACCAATTGCCAGGCGT-ACACTAAGCACTGACGTCGCATATATGTGTGCATAATATACG 118
                      *  ***     **   * *  **      ***    *   **   *  *      ** * 

consensus_1334#0      AACCAATCTGAA-TTAATTGAACAAGCAGCAGAACTACTTTATGGATTAATTCATGCACG 237
consensus_1334#1      GAGATTCGAGAACTTTTTTGCGCACGTACCTTTAC-GTATTATATACGAATCC-TGCGCT 176
                       *       *** **  ***  ** * * *   **    ****  *  *** * *** * 

consensus_1334#0      TTACATTCTTACTAATCG-TGGCATTGCTCAAAT-GATTGAAAAATATCAATCCGGAGAT 295
consensus_1334#1      CTTTTATCGCGGTGATCACTTTTATTCTATATATCGATAGAAAAATATTTCTTC---CAT 233
                       *    **    * ***  *   ***    * ** *** *********   * *    **

consensus_1334#0      TTTGGTTATTGTCCACGTGTATATTGTGAATCCCAACCTATGTTGCCTCTGGGTCTTAGT 355
consensus_1334#1      TT----TTTTATTCATAGGAAAATGAGCAGTTCTG----AGGAGGTATCCTGGATTTCGT 285
                      **    * ** * **   * * **    * * *      * *  *  **  **  ** **

consensus_1334#0      GATGTTCCTGGAGAAGCAATGGTTAAAAGTTATTGTCCCAAATGTATGGATGTTTATACA 415
consensus_1334#1      GGTTTTGC---AATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGAA-GATTATATC 341
                      * * ** *   *    **  **  *  * ** ** *   ** *  *** * * *****  

consensus_1334#0      CCAAAAAGCTCTAGACATCATCACACAGATGGAGCATATTTTGGAACAGGATTTCCCCAT 475
consensus_1334#1      CAGGATAAGTTTA-ATTTAACCGGACTAAATGAACAAGT-----ACCACATTATAGGCAA 395
                      *   * *  * ** *  * * *  **  *  ** **  *     * **   * *   ** 

consensus_1334#0      ATGCTTTTTATGGTTCATCCAGAATATAGACCCAAACGTCCAACAAATCAGTTTGTACCT 535
consensus_1334#1      GCATTAGATATGATTCTT---GATCTTGAACCT--GCTTNNNTTTATTCTGTAGATGA-T 449
                          *   **** *** *   **   *  ***    * *      * ** **   *   *

consensus_1334#0      AGGTTATATGGCTTTAAAATTCATCCTCTAGCATATCAGTTTCAACAACAATCTGCATCA 595
consensus_1334#1      GAATTGGATGGCCATCCAAACCAATCTGAATTAATTGAACA--AGCAGCAGA-------- 499
                         **  *****  *  **  **  **  *  *  * *     * ** **

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)