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Apis mellifera
cluster # 1360 cluster # 1360       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1360#0 length = 504 sequences # 1  
consensus_1360#1 length = 471 sequences # 1  

consensusID : consensus_1360#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence
                              [TGGAGCTGATTTTTGTGTTATTTTTGCAGCTTTATGTTTTGGAATAGCCTTTGTTTTAGGAGGTACAACTGCTTTCTTTGTTGCTTTTGCAGCTTTCTTTTGTTCCTTTGCAGCTCTAAAATAGAATTTATTTAACATATATATATTTTAATAAATATAATAACATAAGATGTGTACATATAATAATATCTATATGTATAAGATTTGTATGAACCCGCAAAAGCCAGACAGTGCAATGAATATAACAATTCTGGGTGAAGCAATTCATTTATTTTAAGACATTCTGAAATCAAACATGAAATGAAATATCATATCTAAGGAACAGATGTCTATAAAATTTTTTCATTGTGTAATTAATCTTTGTGATTAAATTGAATGATATAATTGTGATATAAATCGAGATAAAAGTTTAAGTTTTGGAACTATACTTACTTAATAGCTTGTTCTCTCTGTGCTTTACGAATTTCTGGTTTCATATTACGTTTTGCTAAAATATCTGTAAGA]

[+] EMBL BI511639             [TGGAGCTGATTTTTGTGTTATTTTTGCAGCTTTATGTTTTGGAATAGCCTTTGTTTTAGGAGGTACAACTGCTTTCTTTGTTGCTTTTGCAGCTTTCTTTTGTTCCTTTGCAGCTCTAAAATAGAATTTATTTAACATATATATATTTTAATAAATATAATAACATAAGATGTGTACATATAATAATATCTATATGTATAAGATTTGTATGAACCCGCAAAAGCCAGACAGTGCAATGAATATAACAATTCTGGGTGAAGCAATTCATTTATTTTAAGACATTCTGAAATCAAACATGAAATGAAATATCATATCTAAGGAACAGATGTCTATAAAATTTTTTCATTGTGTAATTAATCTTTGTGATTAAATTGAATGATATAATTGTGATATAAATCGAGATAAAAGTTTAAGTTTTGGAACTATACTTACTTAATAGCTTGTTCTCTCTGTGCTTTACGAATTTCTGGTTTCATATTACGTTTTGCTAAAATATCTGTAAGA]


>consensus_1360#0 TGGAGCTGATTTTTGTGTTATTTTTGCAGCTTTATGTTTTGGAATAGCCTTTGTTTTAGG AGGTACAACTGCTTTCTTTGTTGCTTTTGCAGCTTTCTTTTGTTCCTTTGCAGCTCTAAA ATAGAATTTATTTAACATATATATATTTTAATAAATATAATAACATAAGATGTGTACATA TAATAATATCTATATGTATAAGATTTGTATGAACCCGCAAAAGCCAGACAGTGCAATGAA TATAACAATTCTGGGTGAAGCAATTCATTTATTTTAAGACATTCTGAAATCAAACATGAA ATGAAATATCATATCTAAGGAACAGATGTCTATAAAATTTTTTCATTGTGTAATTAATCT TTGTGATTAAATTGAATGATATAATTGTGATATAAATCGAGATAAAAGTTTAAGTTTTGG AACTATACTTACTTAATAGCTTGTTCTCTCTGTGCTTTACGAATTTCTGGTTTCATATTA CGTTTTGCTAAAATATCTGTAAGA



consensusID : consensus_1360#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATAAAGTATCTTTTTATTTATACAATGCTAAAATTTAACGTTTTCCTCCAACACGTGGAGCTGATTTTTGTGTTATTTTTGCAGCTTTATGTTTTGGAATAGCCTTTGTTTTAGGAGGTACAACTGCTTTCTTTGTTGCTTTTGCAGCTTTCTTTTGTTCCTTTGCAGCTTTAATAGCTTGTTCTCTCTGTGCTTTACGAATTTCTGGTTTCATATTACGTTTTGCTAAAATATCTGTAAGAGATGCACCTACAATAGCACGTTGAAATTTTTGAGTACGTCTTGTTCTTTTTTTTGCTTGTTCTTCTTCTTGTCCTTTTTTATGTTTTCGTCTATATAATACAGTCCACGTGACTTTTCTTGGATTACGTCTCATTAAATGTGCGGATTCACATTTTGAATTCAAGAAAGTGAATGTTTTTCCATCCACTTTTACCATG]

[-] EMBL BI506903             [TTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATAAAGTATCTTTTTATTTATACAATGCTAAAATTTAACGTTTTCCTCCAACACGTGGAGCTGATTTTTGTGTTATTTTTGCAGCTTTATGTTTTGGAATAGCCTTTGTTTTAGGAGGTACAACTGCTTTCTTTGTTGCTTTTGCAGCTTTCTTTTGTTCCTTTGCAGCTTTAATAGCTTGTTCTCTCTGTGCTTTACGAATTTCTGGTTTCATATTACGTTTTGCTAAAATATCTGTAAGAGATGCACCTACAATAGCACGTTGAAATTTTTGAGTACGTCTTGTTCTTTTTTTTGCTTGTTCTTCTTCTTGTCCTTTTTTATGTTTTCGTCTATATAATACAGTCCACGTGACTTTTCTTGGATTACGTCTCATTAAATGTGCGGATTCACATTTTGAATTCAAGAAAGTGAATGTTTTTCCATCCACTTTTACCATG]


>consensus_1360#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATAAAGTATCTTTTTATTTATACAATGCT AAAATTTAACGTTTTCCTCCAACACGTGGAGCTGATTTTTGTGTTATTTTTGCAGCTTTA TGTTTTGGAATAGCCTTTGTTTTAGGAGGTACAACTGCTTTCTTTGTTGCTTTTGCAGCT TTCTTTTGTTCCTTTGCAGCTTTAATAGCTTGTTCTCTCTGTGCTTTACGAATTTCTGGT TTCATATTACGTTTTGCTAAAATATCTGTAAGAGATGCACCTACAATAGCACGTTGAAAT TTTTGAGTACGTCTTGTTCTTTTTTTTGCTTGTTCTTCTTCTTGTCCTTTTTTATGTTTT CGTCTATATAATACAGTCCACGTGACTTTTCTTGGATTACGTCTCATTAAATGTGCGGAT TCACATTTTGAATTCAAGAAAGTGAATGTTTTTCCATCCACTTTTACCATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1360#0      ------------------------------------------------------------
consensus_1360#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATAAAGTATCTTTTTATTTATACAATGCT 60
                                                                                  

consensus_1360#0      --------------------------TGGAGCTGATTTTTGTGTTATTTTTGCAGCTTTA 34
consensus_1360#1      AAAATTTAACGTTTTCCTCCAACACGTGGAGCTGATTTTTGTGTTATTTTTGCAGCTTTA 120
                                                **********************************

consensus_1360#0      TGTTTTGGAATAGCCTTTGTTTTAGGAGGTACAACTGCTTTCTTTGTTGCTTTTGCAGCT 94
consensus_1360#1      TGTTTTGGAATAGCCTTTGTTTTAGGAGGTACAACTGCTTTCTTTGTTGCTTTTGCAGCT 180
                      ************************************************************

consensus_1360#0      TTCTTTTGTTCCTTTGCAGCTCTAAAATAGAATTTATTTAACATATATATATTTTAATAA 154
consensus_1360#1      TTCTTTTGTTCCTTTGCAGCTTTA----ATAGCTTGTTC----TCTCTGTGCTTTACGAA 232
                      ********************* **    * *  ** **     * * * *  ****  **

consensus_1360#0      ATA-TAATAACATAAGATGTGTACATATAATAATATCTATATGTATAAGATTTGTATGAA 213
consensus_1360#1      TTTCTGGTTTCATATTACGTTT---TGCTAAAATATCTGTAAGAGATGCACCTACAATAG 289
                       *  *  *  ****  * ** *   *   * ******* ** *      *  *  *  * 

consensus_1360#0      CCCGCAAAAGCCAGACAGTGCAATGAATATAACAATTCTGGGTGAAGCAATTCATTTATT 273
consensus_1360#1      CACGTTGAAATTTTTGAGTACGTCTTGT-TCTTTTTTTTGCTTGTTCTTCTTCTTGTCCT 348
                      * **   **       *** *      * *     ** **  **      *** * *  *

consensus_1360#0      TTAAGACATTCTGAAATCAAACATGAAATGAA-ATATCATATCTAAGGAACAGATGTCTA 332
consensus_1360#1      TTTTTATGTTTTCGTCTATATAATACAGTCCACGTGACTTTTCTT-GGATTACGTCTC-A 406
                      **   *  ** *    *  *  **  * *  *  *  * * ***  ***  *  * ** *

consensus_1360#0      TAAAATTTTTTCATTGTGTAATTAATCTTTGTGATTAAATTGAATGATATAATTGTGATA 392
consensus_1360#1      TTAAATGTGCGGATT-CACATTTTGAATTCAAGA---AAGTGAATGTTTTTCCATCCACT 462
                      * **** *    ***    * **    **   **   ** ****** * *       *  

consensus_1360#0      TAAATCGAGATAAAAGTTTAAGTTTTGGAACTATACTTACTTAATAGCTTGTTCTCTCTG 452
consensus_1360#1      TTTACCATG--------------------------------------------------- 471
                      *  * *  *                                                   

consensus_1360#0      TGCTTTACGAATTTCTGGTTTCATATTACGTTTTGCTAAAATATCTGTAAGA 504
consensus_1360#1      ----------------------------------------------------
                                                                          




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)