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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[TAATTATATTTTGGGCATATATTATTTTAAAAAGGAAGTCATGTTGCACATATCAGAATTTACATCGAAAATTAATTTTCTTATTCAATTTTAATCAAATATATAAATGAACATAAAAATGATTTGGCACAGATCGTGATGCCGTTGAAAATTCAATACCAACTATATCTAGTTTCCACGAAACTAAATTGTGTCCTTATGTTTCTTGTCACAGAGAAAAAAGGCCAGAAAGAATTCAAAGTATGGAAAATGTAGGATAATTGAATATCTCGTGTTATTAATACACACGTTATACATNNNGTATNNNCGTATTTATACATTAGCAGGTGCGCGCGCGCACACATCCACCCACCCATCCACTTACACACACACACACACACACACACACACACACACACACACACACACACACACAAAATCAAATCAAAGGTCGGAAGCTTTCTCAAATTAGCGGAAAGATATTTGTTGTGATAATAAATATTGAATATATAGCTGTTTTAGGGTATGAATCATTCCTATAAAAAATTAGAATTTAAATAATGCGTCGAGTTAGCGTGGAAAACTAACATTTTCAACAGTCTCAATTTTTTTCTATTCGAGNAAAGGTTCTCGTGAATGCGGATCGAAATGCTAAACGAACCTATCCC]
[+] EMBL BI506768 [TAATTATATTTTGGGCATATATTATTTTAAAAAGGAAGTCATGTTGCACATATCAGAATTTACATCGAAAATTAATTTTCTTATTCAATTTTAATCAAATATATAAATGAACATAAAAATGATTTGGCACAGATCGTGATGCCGTTGAAAATTCAATACCAACTATATCTAGTTTCCACGAAACTAAATTGTGTCCTTATGTTTCTTGTCACAGAGAAAAAAGGCCAGAAAGAATTCAAAGTATGGAAAATGTAGGATAATTGAATATCTCGTGTTATTAATACACACGTTATACATNNNGTATNNNCGTATTTATACATTAGCAGGTGCGCGCGCGCACACATCCACCCACCCATCCACTTACACACACACACACACACACACACACACACACACACACACACACACACACACAAAATCAAATCAAAGGTCGGAAGCTTTCTCAAATTAGCGGAAAGATATTTGTTGTGATAATAAATATTGAATATATAGCTGTTTTAGGGTATGAATCATTCCTATAAAAAATTAGAATTTAAATAATGCGTCGAGTTAGCGTGGAAAACTAACATTTTCAACAGTCTCAATTTTTTTCTATTCGAGNAAAGGTTCTCGTGAATGCGGATCGAAATGCTAAACGAACCTATCCC]
consensusID : consensus_1375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[CAGAAAATCGTTGTTAAAAAATGTGAATAAACATATTGTTTCTTTTATTTTACGATTTATTTTGAAGCCGGGACGATCTTAGAAGCAAAATAGGATTAATTTCTGAAAAATTATCATTTTATTTTTATCAGAATTGTAATTCTTGAATTGCGCTCTTGTACTATCATTTATGTAACACCCTGTACATGTTGAATTGTTCTTTTAACAAGCATATTTAAATACGTGTACGTGTATGTTAACGGTACGAGCGTGTATCCTCGACAAAAAAAGGAAAAATGATTCTCGTTCAATCGACACGCGCACAAAGACGCGGATAGAAGTAGAAAATGGGATAGGTTCGTTTAGCATTTCGATCCGCATTCACGAGAACCTTTTCTCGAATAGA]
[+] EMBL BI510205 [CAGAAAATCGTTGTTAAAAAATGTGAATAAACATATTGTTTCTTTTATTTTACGATTTATTTTGAAGCCGGGACGATCTTAGAAGCAAAATAGGATTAATTTCTGAAAAATTATCATTTTATTTTTATCAGAATTGTAATTCTTGAATTGCGCTCTTGTACTATCATTTATGTAACACCCTGTACATGTTGAATTGTTCTTTTAACAAGCATATTTAAATACGTGTACGTGTATGTTAACGGTACGAGCGTGTATCCTCGACAAAAAAAGGAAAAATGATTCTCGTTCAATCGACACGCGCACAAAGACGCGGATAGAAGTAGAAAATGGGATAGGTTCGTTTAGCATTTCGATCCGCATTCACGAGAACCTTTTCTCGAATAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1375#0 TAATTATATTTTGGGCATATATTATTTTAAAAAGGAAGTCATGTTGCACATATCAGAATT 60
consensus_1375#1 ------------------------------------------------------------
consensus_1375#0 TACATCGAAAATTAATTTTCTTATTCAATTTTAATCAAATATATAAATGAACATAAAAAT 120
consensus_1375#1 ------------------------------------------------------------
consensus_1375#0 GATTTGGCACAGATCGTGATGCCGTTGAAAATTCAATACCAACTATATCTAGTTTCCACG 180
consensus_1375#1 ---------CAGAAAAT--CGTTGTTAAAAAATGTGAATAAAC---ATATTGTTTCTTTT 46
**** * * *** **** * * *** ** * *****
consensus_1375#0 AAACTAAATTGTGTCCTTATGTTTCTTGTCACAGAGAAAAAAGGCCAGAAAGAATTCAAA 240
consensus_1375#1 ATTTTACGATTTATTTTGAAGC----CGGGAC-GATCTTAGAAGCAAAATAGGATT-AAT 100
* ** * * * * * * * ** ** * * ** * * ** *** **
consensus_1375#0 GTATGGAAAATGTAGGATAATTGAATATCTCGTGTTATTAATACACACGTTATACATNNN 300
consensus_1375#1 TTCTGAAAAAT-TATCATT-TTATTTTTATCAGAATTGTAATTCTTGAATTGCGC-TCTT 157
* ** ***** ** ** ** * * ** * **** * ** * *
consensus_1375#0 GTATNNNCGTATTTATACATTAGCAGGTGCGCGCGCGCACACATCCACCCACCCATCCAC 360
consensus_1375#1 GTACTATC--ATTTATGTAACACCCTGTACATGT-TGAATTGTTCTTTTAACAAGCATAT 214
*** * ****** * * * ** * * * * ** ** *
consensus_1375#0 TTACACACACACACACACACACACACACACACACACACACACACACACACACACAAAATC 420
consensus_1375#1 TTAAATACGTGTACGTGTATGTTAACG-GTACGAGCGTGTATCCTCG-ACAAAAAAAGGA 272
*** * ** ** * ** ** * * * * *** * ***
consensus_1375#0 AAATCAAAGGTCGGAAGCTTTCTCAA-ATTAGCGGAAAGATATTTGTTGTGATAATAAAT 479
consensus_1375#1 AAAATGATTCTCG----TTCAATCGACACGCGCACAAAGACGCGGATAGAAGTAGAAAAT 328
*** * *** * ** * * ** ***** * * ** ****
consensus_1375#0 ATTGAATATATAGCTGTTTTAGGGTATGAATCATTCCTATAAAAAATTAGAATTTAAATA 539
consensus_1375#1 G--GGATA---GGTTCGTTTAGCATTTCGATCCGCATTCACGAGAACCTTTTCTCGAATA 383
* *** * * ***** * * *** * * ** * ****
consensus_1375#0 ATGCGTCGAGTTAGCGTGGAAAACTAACATTTTCAACAGTCTCAATTTTTTTCTATTCGA 599
consensus_1375#1 GA---------------------------------------------------------- 385
consensus_1375#0 GNAAAGGTTCTCGTGAATGCGGATCGAAATGCTAAACGAACCTATCCC 647
consensus_1375#1 ------------------------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |