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Apis mellifera
cluster # 1377 cluster # 1377       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1377#0 length = 427 sequences # 1  
 consensus_1377#1 length = 315 sequences # 1  
consensusID : consensus_1377#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence 
                              [GTGCTGCCACTCCTCCAGTCTGGCAAGAAAATCAAGCAGACAGTGGAATGGTGGGAGGTGGATCCGATCAAGATGAACGGTTTACCGTTTCGAGAGGAAGGAAGGAAGGAAGGAAGGAAGTATTAACCCTCGAAGGGAATTTTTTTTCCTTCTCTCTCTCTCAAGAAAGGGAAACCGGTTGTGCGTTCCTTCCAGGACGATGTGAAAGAAGAGGAGGAGAGGAGGGTGATCGTGAATGATCGAACGCGAATTTCCCCTGGCCAGTAGGTTTTTTTACCGATGTAGCTCGTAGGCACTAGCTAATTAAAATAAAGAAGAAAAAAAAAAAATCGGGTAAAGCTGACGAAACAGTAATTACACAAGTTTTTATGGTTAGAACCATATCACGAGCCGAGATCGCGGCGCGTCGATCGATCGGATTCTTCTT]

[+] EMBL BI507931             [GTGCTGCCACTCCTCCAGTCTGGCAAGAAAATCAAGCAGACAGTGGAATGGTGGGAGGTGGATCCGATCAAGATGAACGGTTTACCGTTTCGAGAGGAAGGAAGGAAGGAAGGAAGGAAGTATTAACCCTCGAAGGGAATTTTTTTTCCTTCTCTCTCTCTCAAGAAAGGGAAACCGGTTGTGCGTTCCTTCCAGGACGATGTGAAAGAAGAGGAGGAGAGGAGGGTGATCGTGAATGATCGAACGCGAATTTCCCCTGGCCAGTAGGTTTTTTTACCGATGTAGCTCGTAGGCACTAGCTAATTAAAATAAAGAAGAAAAAAAAAAAATCGGGTAAAGCTGACGAAACAGTAATTACACAAGTTTTTATGGTTAGAACCATATCACGAGCCGAGATCGCGGCGCGTCGATCGATCGGATTCTTCTT]




>consensus_1377#0
GTGCTGCCACTCCTCCAGTCTGGCAAGAAAATCAAGCAGACAGTGGAATGGTGGGAGGTG
GATCCGATCAAGATGAACGGTTTACCGTTTCGAGAGGAAGGAAGGAAGGAAGGAAGGAAG
TATTAACCCTCGAAGGGAATTTTTTTTCCTTCTCTCTCTCTCAAGAAAGGGAAACCGGTT
GTGCGTTCCTTCCAGGACGATGTGAAAGAAGAGGAGGAGAGGAGGGTGATCGTGAATGAT
CGAACGCGAATTTCCCCTGGCCAGTAGGTTTTTTTACCGATGTAGCTCGTAGGCACTAGC
TAATTAAAATAAAGAAGAAAAAAAAAAAATCGGGTAAAGCTGACGAAACAGTAATTACAC
AAGTTTTTATGGTTAGAACCATATCACGAGCCGAGATCGCGGCGCGTCGATCGATCGGAT
TCTTCTT

consensusID : consensus_1377#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence 
                              [GTGCTGCCACTCCTCCAGTCTGGCAAGAAAATCAAGCAGACAGTGGAATGGTGGGAGGTGGATCCGATCAAGATGAACGGTTTACCGTTTCGAGAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGTATTAACCCTCGAAGGGAATTTTTTTTCCTTCTCTCTCTCTCAAGAAAGGGAAACCGGTTGTGCGTTCCTTCCAGGACGATGTGAAAGAAGAGGAGGAGAGGAGGGTGATCGTGAATGATCGAACGCGAATTTCCCCTGGCCAGTAGGTTTTTTTACCGATGTAGCTCGTAGGCATTAGCTAA]

[+] EMBL BI506760             [GTGCTGCCACTCCTCCAGTCTGGCAAGAAAATCAAGCAGACAGTGGAATGGTGGGAGGTGGATCCGATCAAGATGAACGGTTTACCGTTTCGAGAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGTATTAACCCTCGAAGGGAATTTTTTTTCCTTCTCTCTCTCTCAAGAAAGGGAAACCGGTTGTGCGTTCCTTCCAGGACGATGTGAAAGAAGAGGAGGAGAGGAGGGTGATCGTGAATGATCGAACGCGAATTTCCCCTGGCCAGTAGGTTTTTTTACCGATGTAGCTCGTAGGCATTAGCTAA]




>consensus_1377#1
GTGCTGCCACTCCTCCAGTCTGGCAAGAAAATCAAGCAGACAGTGGAATGGTGGGAGGTG
GATCCGATCAAGATGAACGGTTTACCGTTTCGAGAGGAAGGAAAGAAGGAAGGAAGGAAG
GAAGGAAGGAAGTATTAACCCTCGAAGGGAATTTTTTTTCCTTCTCTCTCTCTCAAGAAA
GGGAAACCGGTTGTGCGTTCCTTCCAGGACGATGTGAAAGAAGAGGAGGAGAGGAGGGTG
ATCGTGAATGATCGAACGCGAATTTCCCCTGGCCAGTAGGTTTTTTTACCGATGTAGCTC
GTAGGCATTAGCTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1377#0      GTGCTGCCACTCCTCCAGTCTGGCAAGAAAATCAAGCAGACAGTGGAATGGTGGGAGGTG 60
consensus_1377#1      GTGCTGCCACTCCTCCAGTCTGGCAAGAAAATCAAGCAGACAGTGGAATGGTGGGAGGTG 60
                      ************************************************************

consensus_1377#0      GATCCGATCAAGATGAACGGTTTACCGTTTCGAGAGGAAGGAA------------GGAAG 108
consensus_1377#1      GATCCGATCAAGATGAACGGTTTACCGTTTCGAGAGGAAGGAAAGAAGGAAGGAAGGAAG 120
                      *******************************************            *****

consensus_1377#0      GAAGGAAGGAAGTATTAACCCTCGAAGGGAATTTTTTTTCCTTCTCTCTCTCTCAAGAAA 168
consensus_1377#1      GAAGGAAGGAAGTATTAACCCTCGAAGGGAATTTTTTTTCCTTCTCTCTCTCTCAAGAAA 180
                      ************************************************************

consensus_1377#0      GGGAAACCGGTTGTGCGTTCCTTCCAGGACGATGTGAAAGAAGAGGAGGAGAGGAGGGTG 228
consensus_1377#1      GGGAAACCGGTTGTGCGTTCCTTCCAGGACGATGTGAAAGAAGAGGAGGAGAGGAGGGTG 240
                      ************************************************************

consensus_1377#0      ATCGTGAATGATCGAACGCGAATTTCCCCTGGCCAGTAGGTTTTTTTACCGATGTAGCTC 288
consensus_1377#1      ATCGTGAATGATCGAACGCGAATTTCCCCTGGCCAGTAGGTTTTTTTACCGATGTAGCTC 300
                      ************************************************************

consensus_1377#0      GTAGGCACTAGCTAATTAAAATAAAGAAGAAAAAAAAAAAATCGGGTAAAGCTGACGAAA 348
consensus_1377#1      GTAGGCATTAGCTAA--------------------------------------------- 315
                      ******* *******                                             

consensus_1377#0      CAGTAATTACACAAGTTTTTATGGTTAGAACCATATCACGAGCCGAGATCGCGGCGCGTC 408
consensus_1377#1      ------------------------------------------------------------
                                                                                  

consensus_1377#0      GATCGATCGGATTCTTCTT 427
consensus_1377#1      -------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)