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Apis mellifera
cluster # 1409 cluster # 1409       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1409#0 length = 561 sequences # 1  
 consensus_1409#1 length = 208 sequences # 1  
consensusID : consensus_1409#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence 
                              [AATCTGGCCTGGTTCGCCCTCTCCAAATCCTGTTTCAACAATCTGATCTACTGCGTGGCGGACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATTGCTGCTGCAAAACAACGAAAAGATGGCTACTTATTTGACAAAGAAGCAATATTGGAATATGTTCTAACCAAAAAGAAAGAGTATGCAAGAAAATTGAAAGAGTATGAAAAACAAAAACAACAAGAAGAGGAACAATCTAATGAAAAAAGTGCCAACGAAGAATTACAAAAGTTGCAAAATTTTTTAAAAGGAGAGAAAAATATCGTTTCCAGAAGTCAAACTGTAGCCAAAGAACCTACATCTTCAGTTTCTAATATGAGCAATGGTAAAGATAAGATGCTACCAAGTTTTTGGATTCCATCTAAAACACCAGAAGCAAAAGAAACTATGGTACAGAAACCAGATAAAACAATCTATTGTCCTGTTAGTGGAAAACCATTGAAAATAAAGGATTTAATTTCTGTGAAATTTACTGAAGTAAAAGATCCAGATGACAAGAAATCTCTTATCGTTAAACA]

[+] EMBL BI514463             [AATCTGGCCTGGTTCGCCCTCTCCAAATCCTGTTTCAACAATCTGATCTACTGCGTGGCGGACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATTGCTGCTGCAAAACAACGAAAAGATGGCTACTTATTTGACAAAGAAGCAATATTGGAATATGTTCTAACCAAAAAGAAAGAGTATGCAAGAAAATTGAAAGAGTATGAAAAACAAAAACAACAAGAAGAGGAACAATCTAATGAAAAAAGTGCCAACGAAGAATTACAAAAGTTGCAAAATTTTTTAAAAGGAGAGAAAAATATCGTTTCCAGAAGTCAAACTGTAGCCAAAGAACCTACATCTTCAGTTTCTAATATGAGCAATGGTAAAGATAAGATGCTACCAAGTTTTTGGATTCCATCTAAAACACCAGAAGCAAAAGAAACTATGGTACAGAAACCAGATAAAACAATCTATTGTCCTGTTAGTGGAAAACCATTGAAAATAAAGGATTTAATTTCTGTGAAATTTACTGAAGTAAAAGATCCAGATGACAAGAAATCTCTTATCGTTAAACA]




>consensus_1409#0
AATCTGGCCTGGTTCGCCCTCTCCAAATCCTGTTTCAACAATCTGATCTACTGCGTGGCG
GACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATTGCTGCTGCAAAACAACG
AAAAGATGGCTACTTATTTGACAAAGAAGCAATATTGGAATATGTTCTAACCAAAAAGAA
AGAGTATGCAAGAAAATTGAAAGAGTATGAAAAACAAAAACAACAAGAAGAGGAACAATC
TAATGAAAAAAGTGCCAACGAAGAATTACAAAAGTTGCAAAATTTTTTAAAAGGAGAGAA
AAATATCGTTTCCAGAAGTCAAACTGTAGCCAAAGAACCTACATCTTCAGTTTCTAATAT
GAGCAATGGTAAAGATAAGATGCTACCAAGTTTTTGGATTCCATCTAAAACACCAGAAGC
AAAAGAAACTATGGTACAGAAACCAGATAAAACAATCTATTGTCCTGTTAGTGGAAAACC
ATTGAAAATAAAGGATTTAATTTCTGTGAAATTTACTGAAGTAAAAGATCCAGATGACAA
GAAATCTCTTATCGTTAAACA

consensusID : consensus_1409#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 208
fasta sequence 
                              [AAATCCTGTTTCAACAATCTGATCTACTGCGTGGCGGACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATNNNNTGCTGCAAAACAACGGTGAGTTTCTCGAGGAGGACGCGCGGGGAGGGGGGCCGGAACACTAGCGACGTGCGCCTCAGAGTTCACATTATACACTCGTACGCGAGTCCTGGCTCGTGTCGGCCACCT]

[+] EMBL BI506562             [AAATCCTGTTTCAACAATCTGATCTACTGCGTGGCGGACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATNNNNTGCTGCAAAACAACGGTGAGTTTCTCGAGGAGGACGCGCGGGGAGGGGGGCCGGAACACTAGCGACGTGCGCCTCAGAGTTCACATTATACACTCGTACGCGAGTCCTGGCTCGTGTCGGCCACCT]




>consensus_1409#1
AAATCCTGTTTCAACAATCTGATCTACTGCGTGGCGGACAGGCACTTCAGAAGCGCGTAC
GTCAAGCTTTTCCATTATNNNNTGCTGCAAAACAACGGTGAGTTTCTCGAGGAGGACGCG
CGGGGAGGGGGGCCGGAACACTAGCGACGTGCGCCTCAGAGTTCACATTATACACTCGTA
CGCGAGTCCTGGCTCGTGTCGGCCACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1409#0      AATCTGGCCTGGTTCGCCCTCTCCAAATCCTGTTTCAACAATCTGATCTACTGCGTGGCG 60
consensus_1409#1      ------------------------AAATCCTGTTTCAACAATCTGATCTACTGCGTGGCG 36
                                              ************************************

consensus_1409#0      GACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATTGCT-GCTGCAAAACAAC 119
consensus_1409#1      GACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATNNNNTGCTGCAAAACAAC 96
                      ******************************************     *************

consensus_1409#0      GAAAAGATGGCTACTTATTTGACAAAGAAGCAATATTGGAATATGTTCTAACCAAAAAGA 179
consensus_1409#1      GGTGAG--------TTTCTCGAGGAGGACGCGCGG--GGAGGGGGGCCGGAACACTAGCG 146
                      *   **        **  * **  * ** **      ***    *  *  * **  *   

consensus_1409#0      AAGAGTATGCAAGAAAATTGAAAGAGTATGAAAA-ACAAAAACAACAAGAAGAGG-AACA 237
consensus_1409#1      AC--GTGCGCCTCAGAGTTCACATTATACACTCGTACGCGAGTCCTGGCTCGTGTCGGCC 204
                      *   **  **   * * ** * *   **       **   *          * *    * 

consensus_1409#0      ATCTAATGAAAAAAGTGCCAACGAAGAATTACAAAAGTTGCAAAATTTTTTAAAAGGAGA 297
consensus_1409#1      ACCT-------------------------------------------------------- 208
                      * **                                                        

consensus_1409#0      GAAAAATATCGTTTCCAGAAGTCAAACTGTAGCCAAAGAACCTACATCTTCAGTTTCTAA 357
consensus_1409#1      ------------------------------------------------------------
                                                                                  

consensus_1409#0      TATGAGCAATGGTAAAGATAAGATGCTACCAAGTTTTTGGATTCCATCTAAAACACCAGA 417
consensus_1409#1      ------------------------------------------------------------
                                                                                  

consensus_1409#0      AGCAAAAGAAACTATGGTACAGAAACCAGATAAAACAATCTATTGTCCTGTTAGTGGAAA 477
consensus_1409#1      ------------------------------------------------------------
                                                                                  

consensus_1409#0      ACCATTGAAAATAAAGGATTTAATTTCTGTGAAATTTACTGAAGTAAAAGATCCAGATGA 537
consensus_1409#1      ------------------------------------------------------------
                                                                                  

consensus_1409#0      CAAGAAATCTCTTATCGTTAAACA 561
consensus_1409#1      ------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)