cluster # 147

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Apis mellifera
cluster # 147 cluster # 147 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_147#0 length = 673 sequences # 4

consensus_147#1 length = 632 sequences # 1
consensus_147#2 length = 178 sequences # 1

consensusID : consensus_147#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 673
fasta sequence

                              [AAATTCCCTCTCCACCACTATGGAGAATGTTTCTTGTTAAATAATAATTGAAAAATTTTGTCGATCGATTCGTTTCTATTTTAGAAGCGAGATAACCT--ATATATATATACATAAAACAAAAAGAAAAAGTAAGTTTTTTTCGTTTTGCTTCGGCGAACAATATCTGATTTTTCTGCGGAAGATAAAATCCGCGTTTTTACCACGAGCATTGTATACGTACGCGAATTTTTATTGCCGTTTTTATTACACAGACAGCGCAAAAGTGGTCGATAAACGACGGTTTCCCGCGTAAAATCATCACGTGACTCGTTATTATGTTCTGTGTTATTGTTTTACCACTTCACATGTTCGGTCATGTAAGCGATTGTACATATATATAAAACGTGCACACGCAATTGTAATTTGTCATCAGTGTTAAAACTCGAGTGTCAACTAGGACTGCCGAGCGATGAATTACTCGTTCTGACAGATATATATATATATATATACTTTCGGAATATATAATACACGTATTATAACGTATACATATAATATGTATATTATGTATCGTATACAGGGATATGTAGCCCGCACAGTTAACCATGACCAAAAAGTGCCGAAACATTGGCGAAAAAAAAAATCGAAAACAAACGAAAAAGATATAAGCAGTAAAAAGTATACATACATTATTCCG]

[+] EMBL BI509419             [AAATTCCCTCTCCACCACTATGGAGAATGTTTCTTGTTAAATAATAATTGAAAAATTTTGTCGATCGATTCGTTTCTATTTTAGAAGCGAGATAACCT  ATATATATATACATAAAACAAAAAGAAAAAGTAAGTTTTTTTCNNNTTGCTTCGGCGAACAATATCTGATTTTTCTGCGGAAGATAAAATCCGCGTTTTTACCACGAGCATTGTATACGTACGCGAATTTTTATTGCCGTTTTTATTACACAGACAGCGCAAAAGTGGTCGATAAACGACGGTTTCCCGCGTAAAATCATCACGTGACTCGTTATTATGTTCTGTGTTATTGTTTTACCACTTCACATGTTCGGTCATGTAAGCGATTGTACATATATATAAAACGTGCACACGCAATTGTAATTTGTCATCAGTGTTAAAACTCGAGTGTCAACTAGGACTGCCGAGCGATGAATTACTCGTTCTGACAGATATATATATATATATATACTTTCGGAATATATAATACACGTATTATAACGTATACATATAATATGTATATTATGTATCGTATACAGGGATATGTAGCCCGCACAGTTAACCATGACCAAAAAGTGCCGAAACATTGGCGAAAAA                                                           ]
[-] EMBL BI503507             [                                                 GAAAAATTTTGTCGATCGATTCGTTTCTATTTTAGAAGCGAGATANNCT  ATATATATATACATAAAACAAAAAGAAAAAGTAAGTTTTTTTCGTTTTGCTTCGGCGAACAATATCTGATTTTTCTGCGGAAGATAAAATCCGCGTTTTTACCACGAGCATTGTATACGTACGCGAATTTTTATTGCCGTTTTTATTACACAGACAGCGCAAAAGTGGTCGATAAACGACGGTTTCCCGCGTAAAATCATCACGTGACTCGTTATTATGTTCTGTGTTATTGTTTTACCACTTCACATGTTCGGTCATGTAAGCGATTGTACATATATATAAAACGTGCACACGCAATTGTAATTTGTCATCAGTGTTAAAACTCGAGTGTCAACTAGGACTGCCGAGCGATGAATTACTCGTTCTGACAGATATATATATATATATATACTTTCGGAATATATAATACACGTATTATAACGTATACATATAATATGTATATTATGTATCGTATA                                                                                                                        ]
[+] EMBL BI509250             [                                                         TTGTCGATCGATTCGTTTCTATTTTAGAAGCGAGATAACCTACATATATATATACATAAAACAAAAAGAAAAAGTAAGTTTTTTTCGTTTTGCTTCGGCGAACAATATCTGATTTTTCTGCGGGAGATAAAATCCGCGTTTTTACCACGAGCATTGTATACGTACGCGAATTTTTATTGCCGTTTTTATTACACAGACAGCGCAAAAGTGGTCGATAAACGACGGTTTCCCGCGTAAAATCATCACGTGACTCGTTATTATGTTCTGTGTTATTGTTTTACCACTTCACATGTTCGGTCATGTAAGCGATTGTACATATATATAAAACGTGCACACGCAATTGTAATTTGTCATCAGTGTTAAAACTCGAGTGTCAACTAGGACTGCCGAGCGATGAATTACTCGTTCTGACAGATATATATATATATATATACTTTCGGAATATATAATACACGTATTATAACGTATACATATAATATGTATATTATGTATCGTATACAGGGATATGTAGCCCGCACAGTTAACCATGACCAAAAAGTGCCGAAACATTGGCGAAAAAAAAAATCGAAAACAAACGAAAAAGATATAAGCAGTA                       ]
[+] EMBL BI509718             [                                                                                                      ATATATATACATAAAACAAAAAGAAAAAGTAAGTTTTTTTCGTTTTGCTTCGGCGAACAATATCTGATTTTTCTGCGGAAGATAAAATCCGCGTTTTTACCACGAGCATTGTATACGTACGCGAATTTTTATTGCCGTTTTTATTACACAGACAGCGCAAAAGTGGTCGATAAACGACGGTTTCCCGCGTAAAATCATCACGTGACTCGTTATTATGTTCTGTGTTATTGTTTTACCACTTCACATGTTCGGTCATGTAAGCGATTGTACATATATATAAAACGTGCACACGCAATTGTAATTTGTCATCAGTGTTAAAACTCGAGTGTCAACTAGGACTGCCGAGCGATGAATTACTCGTTCTGACAGATATATATATATATATATACTTTCGGAATATATAATACACGTATTATAACGTATACATATAATATGTATATTATGTATCGTATACAGGGATATGTAGCCCGCACAGTTAACCATGACCAAAAAGTGCCGAAACATTGGCGAAAAAAAAAATCGAAAACAAATGAAAAAGATATAAGCAGTAAAAAGTATACATACATTATTCCG]




>consensus_147#0
AAATTCCCTCTCCACCACTATGGAGAATGTTTCTTGTTAAATAATAATTGAAAAATTTTG
TCGATCGATTCGTTTCTATTTTAGAAGCGAGATAACCTATATATATATACATAAAACAAA
AAGAAAAAGTAAGTTTTTTTCGTTTTGCTTCGGCGAACAATATCTGATTTTTCTGCGGAA
GATAAAATCCGCGTTTTTACCACGAGCATTGTATACGTACGCGAATTTTTATTGCCGTTT
TTATTACACAGACAGCGCAAAAGTGGTCGATAAACGACGGTTTCCCGCGTAAAATCATCA
CGTGACTCGTTATTATGTTCTGTGTTATTGTTTTACCACTTCACATGTTCGGTCATGTAA
GCGATTGTACATATATATAAAACGTGCACACGCAATTGTAATTTGTCATCAGTGTTAAAA
CTCGAGTGTCAACTAGGACTGCCGAGCGATGAATTACTCGTTCTGACAGATATATATATA
TATATATACTTTCGGAATATATAATACACGTATTATAACGTATACATATAATATGTATAT
TATGTATCGTATACAGGGATATGTAGCCCGCACAGTTAACCATGACCAAAAAGTGCCGAA
ACATTGGCGAAAAAAAAAATCGAAAACAAACGAAAAAGATATAAGCAGTAAAAAGTATAC
ATACATTATTCCG

consensusID : consensus_147#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [GTTATACTTTTTTCTCTTTTTTTCTTTTTTTTCTTTTTTAAAAGCGAGATAACCTATATATATATACATAAAACAAAAAGAAAAAGTAAGTTTTTTTCGTTTTGCTTCGGCGAACAATATCTGATTTTTCTGCGGAAGATAAAATCCGCGTTTTTACCACGAGCATTGTATACGTACGCGAATTTTTATTGCCGTTTTTATTACACAGACAGCGCAAAAGTGGTCGATAAACGACGGTTTCCCGCGTAAAATCATCACGTGACTCGTTATTATGTTCTGTGTTATTGTTTTACCACTTCACATGTTCGGTCATGTAAGCGATTGTACATATATATAAAACGTGCACACGCAATTGTNNTNTGTCATCAGTGTTAAAACTCGAGTGTCAACTAGGACTGCCGAGCGATGAATTACTCGTTCTGACAGATATATATATATATATATACTTTCGGAATATATAATACACGTATTATAACGTATACATATAATATGTATATTATGTATCGTATACAGGGATATGTAGCCCGCACAGTTNNCCATGACCAAAAAGTGCCGAAACATTGGCGAAAAAAAAAATCGAAAACAAATGAAAAAGATATAAGCAGTAAAAAGTATACATACATTATTCCGGA]

[+] EMBL BI510124             [GTTATACTTTTTTCTCTTTTTTTCTTTTTTTTCTTTTTTAAAAGCGAGATAACCTATATATATATACATAAAACAAAAAGAAAAAGTAAGTTTTTTTCGTTTTGCTTCGGCGAACAATATCTGATTTTTCTGCGGAAGATAAAATCCGCGTTTTTACCACGAGCATTGTATACGTACGCGAATTTTTATTGCCGTTTTTATTACACAGACAGCGCAAAAGTGGTCGATAAACGACGGTTTCCCGCGTAAAATCATCACGTGACTCGTTATTATGTTCTGTGTTATTGTTTTACCACTTCACATGTTCGGTCATGTAAGCGATTGTACATATATATAAAACGTGCACACGCAATTGTNNTNTGTCATCAGTGTTAAAACTCGAGTGTCAACTAGGACTGCCGAGCGATGAATTACTCGTTCTGACAGATATATATATATATATATACTTTCGGAATATATAATACACGTATTATAACGTATACATATAATATGTATATTATGTATCGTATACAGGGATATGTAGCCCGCACAGTTNNCCATGACCAAAAAGTGCCGAAACATTGGCGAAAAAAAAAATCGAAAACAAATGAAAAAGATATAAGCAGTAAAAAGTATACATACATTATTCCGGA]




>consensus_147#1
GTTATACTTTTTTCTCTTTTTTTCTTTTTTTTCTTTTTTAAAAGCGAGATAACCTATATA
TATATACATAAAACAAAAAGAAAAAGTAAGTTTTTTTCGTTTTGCTTCGGCGAACAATAT
CTGATTTTTCTGCGGAAGATAAAATCCGCGTTTTTACCACGAGCATTGTATACGTACGCG
AATTTTTATTGCCGTTTTTATTACACAGACAGCGCAAAAGTGGTCGATAAACGACGGTTT
CCCGCGTAAAATCATCACGTGACTCGTTATTATGTTCTGTGTTATTGTTTTACCACTTCA
CATGTTCGGTCATGTAAGCGATTGTACATATATATAAAACGTGCACACGCAATTGTNNTN
TGTCATCAGTGTTAAAACTCGAGTGTCAACTAGGACTGCCGAGCGATGAATTACTCGTTC
TGACAGATATATATATATATATATACTTTCGGAATATATAATACACGTATTATAACGTAT
ACATATAATATGTATATTATGTATCGTATACAGGGATATGTAGCCCGCACAGTTNNCCAT
GACCAAAAAGTGCCGAAACATTGGCGAAAAAAAAAATCGAAAACAAATGAAAAAGATATA
AGCAGTAAAAAGTATACATACATTATTCCGGA

consensusID : consensus_147#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [TGCATGTATGTATGTATGCTCGTACTTTACGAACGCACGATCGTAGATTCGATATCCTGACCGTGCGTTTTACTGATCCGGAATAATGTATGTATACTTTTTACTGCTTATATTTTTTTCATATGTTGATATCCTAACAAGATAGGATATCAACATATGAAAAAAAAAAAAAAAAAAA]

[+] EMBL BI507556             [TGCATGTATGTATGTATGCTCGTACTTTACGAACGCACGATCGTAGATTCGATATCCTGACCGTGCGTTTTACTGATCCGGAATAATGTATGTATACTTTTTACTGCTTATATTTTTTTCATATGTTGATATCCTAACAAGATAGGATATCAACATATGAAAAAAAAAAAAAAAAAAA]




>consensus_147#2
TGCATGTATGTATGTATGCTCGTACTTTACGAACGCACGATCGTAGATTCGATATCCTGA
CCGTGCGTTTTACTGATCCGGAATAATGTATGTATACTTTTTACTGCTTATATTTTTTTC
ATATGTTGATATCCTAACAAGATAGGATATCAACATATGAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_147#0      AAATTCCCTCTCCACCACTATGGAGAATGTTTCTTGTTAAATAATAATTGAAAAATTTTG 60
consensus_147#1      ----------------------------------------GTTATACTTTTT---TCTCT 17
consensus_147#2      ------------------------------------------------------------
                                                                                 

consensus_147#0      TCGATCGATTCGTTTCTATTTTAGAAGCGAGATAACCTATATATATATACATAAAACAAA 120
consensus_147#1      TTTTTTCTTTTTTTTCTTTTTTAAAAGCGAGATAACCTATATATATATACATAAAACAAA 77
consensus_147#2      ------------------------------------------------------------
                                                                                 

consensus_147#0      AAGAAAAAGTAAGTTTTTTTCGTTTTGCTTCGGCGAACAATATCTGATTTTTCTGCGGAA 180
consensus_147#1      AAGAAAAAGTAAGTTTTTTTCGTTTTGCTTCGGCGAACAATATCTGATTTTTCTGCGGAA 137
consensus_147#2      ------------------------------------------------------------
                                                                                 

consensus_147#0      GATAAAATCCGCGTTTTTACCACGAGCATTGTATACGTACGCGAATTTTTATTGCCGTTT 240
consensus_147#1      GATAAAATCCGCGTTTTTACCACGAGCATTGTATACGTACGCGAATTTTTATTGCCGTTT 197
consensus_147#2      ------------------------------------------------------------
                                                                                 

consensus_147#0      TTATTACACAGACAGCGCAAAAGTGGTCGATAAACGACGGTTTCCCGCGTAAAATCATCA 300
consensus_147#1      TTATTACACAGACAGCGCAAAAGTGGTCGATAAACGACGGTTTCCCGCGTAAAATCATCA 257
consensus_147#2      ------------------------------------------------------------
                                                                                 

consensus_147#0      CGTGACTCGTTATTATGTTCTGTGTTATTGTTTTACCACTTCACATGTTCGGTCATGTAA 360
consensus_147#1      CGTGACTCGTTATTATGTTCTGTGTTATTGTTTTACCACTTCACATGTTCGGTCATGTAA 317
consensus_147#2      ------------------------------------------------------------
                                                                                 

consensus_147#0      GCGATTGTACATATATATAAAACGTGCACACGCAATTGTAATTTGTCATCAGTGTTAAAA 420
consensus_147#1      GCGATTGTACATATATATAAAACGTGCACACGCAATTGTNNTNTGTCATCAGTGTTAAAA 377
consensus_147#2      ------------------------------------------------------------
                                                                                 

consensus_147#0      CTCGAGTGTCAACTAGGACTGCCGAGCGATGAATTACTCGTTCTGACAGATATATATATA 480
consensus_147#1      CTCGAGTGTCAACTAGGACTGCCGAGCGATGAATTACTCGTTCTGACAGATATATATATA 437
consensus_147#2      --------------------------------------------TGCATGTATGTATGTA 16
                                                                   **  *** *** **

consensus_147#0      TATATATACTTTCGGAATATATAATACACGTATTATAACGTATACATATAATATGTATAT 540
consensus_147#1      TATATATACTTTCGGAATATATAATACACGTATTATAACGTATACATATAATATGTATAT 497
consensus_147#2      TGCTCGTACTTTACGAACGCACGAT-CGTAGATT----CG-ATATCCTGACCGTGCGTTT 70
                     *     ******  ***   *  ** *    ***    ** ***     *   **  * *

consensus_147#0      TATGTATCGTATACAGGG-ATATGTAGCCCGCACAGTTAACCATGACCAAAAAGTGCCGA 599
consensus_147#1      TATGTATCGTATACAGGG-ATATGTAGCCCGCACAGTTNNCCATGACCAAAAAGTGCCGA 556
consensus_147#2      TACTGATCCGGAATAATGTATGTATACTTTTTACTGCTTAT-ATTTTTTTCATATGTTGA 129
                     **   ***    * *  * ** * **      ** * *    **       *  **  **

consensus_147#0      AACATTGGCGAAAAAAAAAATCGAAAACAAACGAAAAAGATATAAGCAGTAAAAAGTATA 659
consensus_147#1      AACATTGGCGAAAAAAAAAATCGAAAACAAATGAAAAAGATATAAGCAGTAAAAAGTATA 616
consensus_147#2      TATCCTAACAAGATAGGATATC---AACATATGAAAAAAAAAAAAAAAAAAA-------- 178
                      *   *  * * * *  * ***   **** * ****** * * **  *  **        

consensus_147#0      CATACATTATTCCG-- 673
consensus_147#1      CATACATTATTCCGGA 632
consensus_147#2      ----------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)