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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1476 cluster # 1476       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1476#0 length = 340 sequences # 1  
consensus_1476#1 length = 275 sequences # 1  

consensusID : consensus_1476#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence
                              [CATACGGAACAAAATGATTTCCATGCTAAGATGTACTTTCTTTTTCCTATCTGTTATTTTAATAACAAGCTATTTTGTGACACCAACGATGTCTATCAAGTGTAATTGTAAGAGGCATGTTATAAAACCTCATATTTGTAGAAAAATATGTGGGAAGAACGGATAAATTTTTACACTTCTATTTCCATCAAGCAATAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTCATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATATGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA]

[+] EMBL S78459               [CATACGGAACAAAATGATTTCCATGCTAAGATGTACTTTCTTTTTCCTATCTGTTATTTTAATAACAAGCTATTTTGTGACACCAACGATGTCTATCAAGTGTAATTGTAAGAGGCATGTTATAAAACCTCATATTTGTAGAAAAATATGTGGGAAGAACGGATAAATTTTTACACTTCTATTTCCATCAAGCAATAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTCATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATATGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA]


>consensus_1476#0 CATACGGAACAAAATGATTTCCATGCTAAGATGTACTTTCTTTTTCCTATCTGTTATTTT AATAACAAGCTATTTTGTGACACCAACGATGTCTATCAAGTGTAATTGTAAGAGGCATGT TATAAAACCTCATATTTGTAGAAAAATATGTGGGAAGAACGGATAAATTTTTACACTTCT ATTTCCATCAAGCAATAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTCA TCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATAT GTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA



consensusID : consensus_1476#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence
                              [GAATACGAAACAAAATGATTTCTATGCTGAGATGCATTTACTTATTTTTATCCGTTATTTTAATAACAAGCTACTTTGTGACACCAGTAATGCCTTGTAATTGTAAGGCACCAGAAACTGCACTTTGCGCAAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTCATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATATGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA]

[+] EMBL S78458               [GAATACGAAACAAAATGATTTCTATGCTGAGATGCATTTACTTATTTTTATCCGTTATTTTAATAACAAGCTACTTTGTGACACCAGTAATGCCTTGTAATTGTAAGGCACCAGAAACTGCACTTTGCGCAAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTCATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATATGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA]


>consensus_1476#1 GAATACGAAACAAAATGATTTCTATGCTGAGATGCATTTACTTATTTTTATCCGTTATTT TAATAACAAGCTACTTTGTGACACCAGTAATGCCTTGTAATTGTAAGGCACCAGAAACTG CACTTTGCGCAAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTCATCAAA ATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATATGTTAT CTCTATATATGTTATCTCTATATTATTAAAAAATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1476#0      -CATACGGAACAAAATGATTTCCATGCTAAGATGTACTTTCTTTTTCCTATCTGTTATTT 59
consensus_1476#1      GAATACGAAACAAAATGATTTCTATGCTGAGATGCATTTACTTATTTTTATCCGTTATTT 60
                        ***** ************** ***** ***** * ** *** **  **** *******

consensus_1476#0      TAATAACAAGCTATTTTGTGACACCAACGATGTCTATCAAGTGTAATTGTAAGAGGCATG 119
consensus_1476#1      TAATAACAAGCTACTTTGTGACACCAGTAATGCCT------TGTAATTGTAAGGCAC--- 111
                      ************* ************   *** **      ************   *   

consensus_1476#0      TTATAAAACCTCATATTTGTAGAAAAATATGTGGGAAGAACGGATAAATTTTTACACTTC 179
consensus_1476#1      -------------------CAGAAA--------------------------CTGCACTTT 126
                                          *****                           * ***** 

consensus_1476#0      TATTTCCATCAAGCAATAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTC 239
consensus_1476#1      ------------GCGCAAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTC 174
                                  **   *******************************************

consensus_1476#0      ATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATA 299
consensus_1476#1      ATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATA 234
                      ************************************************************

consensus_1476#0      TGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA 340
consensus_1476#1      TGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA 275
                      *****************************************




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)