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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[AGAGATCGTGACCATGATTTAAGACGACAAAATCCTCGATCTTCTGGAAAATGTCGAGAGACACGTAGAACATTATCATTTGAAGCTCGTGTTTTTCATCCATCCAGTTCTGTTGAAGGAACCAGTAATTCTGGAGCTGGTAGTTCCTCCTCCAATTCTCATCCATTACCTGTTAGTCATCCAAATAATGATCACTTGACTATGCATCAACTACAATTTGGAGACAGACTATATTCAAAAGTTTATGCATTGCAACCCGCATTAGCTGCTAAAATAACTGGTATGCTGTTAGAGCTGCCCCCTGCACAGCTGTTGATGTTACTAGCTTCAGAAGATGCTCTGCAGCAAAAAGTAGAGGAAGCATTTGAAATAATACGTAGTCATAGTCAGGAATCGGCAAAAGAAGCGTTGTTGGATCTCGATGTATTCAGTTTGATTGCACGTTGCGGAGCTAATAAGAAAAAAATTGAGAATAGTA]
[+] EMBL BI515128 [AGAGATCGTGACCATGATTTAAGACGACAAAATCCTCGATCTTCTGGAAAATGTCGAGAGACACGTAGAACATTATCATTTGAAGCTCGTGTTTTTCATCCATCCAGTTCTGTTGAAGGAACCAGTAATTCTGGAGCTGGTAGTTCCTCCTCCAATTCTCATCCATTACCTGTTAGTCATCCAAATAATGATCACTTGACTATGCATCAACTACAATTTGGAGACAGACTATATTCAAAAGTTTATGCATTGCAACCCGCATTAGCTGCTAAAATAACTGGTATGCTGTTAGAGCTGCCCCCTGCACAGCTGTTGATGTTACTAGCTTCAGAAGATGCTCTGCAGCAAAAAGTAGAGGAAGCATTTGAAATAATACGTAGTCATAGTCAGGAATCGGCAAAAGAAGCGTTGTTGGATCTCGATGTATTCAGTTTGATTGCACGTTGCGGAGCTAATAAGAAAAAAATTGAGAATAGTA]
consensusID : consensus_1537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence
[AATAGAAATTACTTTGGTTTTTTATTTTAAAAATATAAATATATATATATATATTTTTTTTTTTTTAAAGGCATTGCTTGCAAATGAAAAACTGCCTAACCTGGAAGCTGCACAAGTGGGATCAAAATATACCCAATATAATGTTCTTCGAAAGCTAAAAAGTAGAGATCGTNNNCATGATTTAAGACGNNAAGTAAATATAATAATNNATATAAAAAAAAAAAAAAAATTAAAAAATGTTTTTTTTTTTGTTTATGGGAGCTATCTCATTACAGAATCCTCGATCTTCTGGAAAATGTCGAGAGACACGTAGAACATTATCATTTGAAGCTCGTGTTTTTCATCCATCCAGTTCTGTTGAAGGAACCAGTAATTCTG]
[-] EMBL BI513287 [AATAGAAATTACTTTGGTTTTTTATTTTAAAAATATAAATATATATATATATATTTTTTTTTTTTTAAAGGCATTGCTTGCAAATGAAAAACTGCCTAACCTGGAAGCTGCACAAGTGGGATCAAAATATACCCAATATAATGTTCTTCGAAAGCTAAAAAGTAGAGATCGTNNNCATGATTTAAGACGNNAAGTAAATATAATAATNNATATAAAAAAAAAAAAAAAATTAAAAAATGTTTTTTTTTTTGTTTATGGGAGCTATCTCATTACAGAATCCTCGATCTTCTGGAAAATGTCGAGAGACACGTAGAACATTATCATTTGAAGCTCGTGTTTTTCATCCATCCAGTTCTGTTGAAGGAACCAGTAATTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1537#0 AGAGATCGTGACCATGATTTAAGACGACAAAATCCTCGATCTTCTGGAAAATGTCGAGAG 60
consensus_1537#1 ------------------------------------------------------------
consensus_1537#0 ACACGTAGAACATTATCATTTGAAGCTCGTGTTTTTCATCCATCCAGTTCTGTTGAAGGA 120
consensus_1537#1 ---AATAGAA----ATTACTTTGGTTTTTTATTTTAAAAATATAAATATATATATATATA 53
***** ** * ** * * **** * ** * * * * * *
consensus_1537#0 ACCAGTAATTCTGGAGCTGGTAGTTCCTCCTCCAATTCTCATCCATTACCTGTTAGTCAT 180
consensus_1537#1 TTTTTTTTTTTTTAAAGGCATTGCTTGCAAATGAAAAACTGCCTA--ACCTGGAAGCTGC 111
* ** * * * * * ** * * ***** **
consensus_1537#0 CCAAATAATGATCACTTGACTATGCATCAACTACAATTTGGAGACAGACTATATTCAAAA 240
consensus_1537#1 ACAAGTGG-GATCAAAATATACCCAATATAATGTTCTTCGAAAGCTAAAAAGTAGAGATC 170
*** * ***** * ** * * ** * * * * * *
consensus_1537#0 GTTTATGCATTGCAACCCGCATTAGCTGCTAAAATAACTGGTATGCTGTTAGAGCTGCCC 300
consensus_1537#1 GTNNNCATGATTTAAGACGNNA-AGTAAATATAATAATNNATATAAAAAAAAAAAAAAA- 228
** * ** ** ** ** ***** *** * *
consensus_1537#0 CCTGCACAGCTGTTGATGTTACTAGCTTCAGAAGATGCTCTGCAGCAAAAAGTAGAGGAA 360
consensus_1537#1 -ATTAAAAAATGTTTTTTTTTTTGTTTATGGGAGCTATCTCATTACAGAATCCTC---GA 284
* * * **** * ** * * * ** * ** ** *
consensus_1537#0 GCATTTGAAATAATACGTAGTCATAGTCAGGA-ATCGGCAAAAGAAGCGTTGTTGGATCT 419
consensus_1537#1 TCTTCTGGAA-AATGTCGAGAGACACGTAGAACATTATCATTTGAAGC-TCGT--GTTTT 340
* * ** ** *** ** * * ** * ** ** ***** * ** * * *
consensus_1537#0 CGATGTATTCAGTTTGATTGCACGTTGCGGAGCTAATAAGAAAAAAATTGAGAATAGTA 478
consensus_1537#1 TCATCCATCCAGTTCTGTTGAAGGAACCAGTAATTCTG--------------------- 378
** ** ***** *** * * * * * *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |