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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1539 cluster # 1539       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1539#0 length = 533 sequences # 1  
 consensus_1539#1 length = 417 sequences # 1  
consensusID : consensus_1539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence 
                              [TTTAATCATTTAAATACATTAAAAAACATAAAAAAAGAATTATTTTTATAGGCTAACTTACATATCGAGTACAAAACAAAATATATGTAATAAAAAAATAGTATATATAGACATATATAACAGTAGTAAAAACAGATAATATATATATATAAACATAATTTCAATTAGAAAGCAGAATTCGCAAAAGAAATTATTTAAAATAATCATATAATATTTTATATTATGGAGACAACCAACCAGCTAGTAAACTACCTAATAATAATTGTGCAACTGGTAATATTGACAATGGTAAATTTACAGCTGAACCATGAGCTGAACCATGATAAGCACCACGTAAAATCCAGCTACCAAGACCAACTGATTTGTGAGTACTTGTAAAAAGTGTAGCTAGTAAGATATTTCGAGGTAACCATCGAGAGCACAAAATCCAACATAAGCAGCTAACAAATAGTTGTCCCGCACAAGCAATTAATACACATAATAATACATCAGAAGCTTGCAAAGATGATGCATCTATTAACAATGCATCACAA]

[+] EMBL BI515147             [TTTAATCATTTAAATACATTAAAAAACATAAAAAAAGAATTATTTTTATAGGCTAACTTACATATCGAGTACAAAACAAAATATATGTAATAAAAAAATAGTATATATAGACATATATAACAGTAGTAAAAACAGATAATATATATATATAAACATAATTTCAATTAGAAAGCAGAATTCGCAAAAGAAATTATTTAAAATAATCATATAATATTTTATATTATGGAGACAACCAACCAGCTAGTAAACTACCTAATAATAATTGTGCAACTGGTAATATTGACAATGGTAAATTTACAGCTGAACCATGAGCTGAACCATGATAAGCACCACGTAAAATCCAGCTACCAAGACCAACTGATTTGTGAGTACTTGTAAAAAGTGTAGCTAGTAAGATATTTCGAGGTAACCATCGAGAGCACAAAATCCAACATAAGCAGCTAACAAATAGTTGTCCCGCACAAGCAATTAATACACATAATAATACATCAGAAGCTTGCAAAGATGATGCATCTATTAACAATGCATCACAA]




>consensus_1539#0
TTTAATCATTTAAATACATTAAAAAACATAAAAAAAGAATTATTTTTATAGGCTAACTTA
CATATCGAGTACAAAACAAAATATATGTAATAAAAAAATAGTATATATAGACATATATAA
CAGTAGTAAAAACAGATAATATATATATATAAACATAATTTCAATTAGAAAGCAGAATTC
GCAAAAGAAATTATTTAAAATAATCATATAATATTTTATATTATGGAGACAACCAACCAG
CTAGTAAACTACCTAATAATAATTGTGCAACTGGTAATATTGACAATGGTAAATTTACAG
CTGAACCATGAGCTGAACCATGATAAGCACCACGTAAAATCCAGCTACCAAGACCAACTG
ATTTGTGAGTACTTGTAAAAAGTGTAGCTAGTAAGATATTTCGAGGTAACCATCGAGAGC
ACAAAATCCAACATAAGCAGCTAACAAATAGTTGTCCCGCACAAGCAATTAATACACATA
ATAATACATCAGAAGCTTGCAAAGATGATGCATCTATTAACAATGCATCACAA

consensusID : consensus_1539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence 
                              [ATATAGCGTATAACGCTTCGAAGTAGTGTAATTGGTTTTTCTTTTTTACTTTCACTTAATGTACTATTTAAAATTGTTCCTGTAATGATGTACAGTGTATTGTATAATTGTCATGATTTTCTTTTATCAAATATCAATGAAACTAAGTTGATTAGAATTGAAAAAACTTATTCGTGCATAATTTTACACTAGTTGTTTCAATATATACTAATAATAATTGTGCAACTGGTAATATTGACAATGGTAAATTTACAGCTGAACCATGAGCTGAACCATGATAAGCACCACGTAAAATCCAGCTACCAAGACCAACTGATTTGTGAGTACTTGTAAAAAGTGTAGCTAGTAAGATATTTCGAGGTAACCATCGAGAGCACAAAATCCAACATAAGCAGCTAACAAATAGTTGTCCCGCAC]

[-] EMBL BI515330             [ATATAGCGTATAACGCTTCGAAGTAGTGTAATTGGTTTTTCTTTTTTACTTTCACTTAATGTACTATTTAAAATTGTTCCTGTAATGATGTACAGTGTATTGTATAATTGTCATGATTTTCTTTTATCAAATATCAATGAAACTAAGTTGATTAGAATTGAAAAAACTTATTCGTGCATAATTTTACACTAGTTGTTTCAATATATACTAATAATAATTGTGCAACTGGTAATATTGACAATGGTAAATTTACAGCTGAACCATGAGCTGAACCATGATAAGCACCACGTAAAATCCAGCTACCAAGACCAACTGATTTGTGAGTACTTGTAAAAAGTGTAGCTAGTAAGATATTTCGAGGTAACCATCGAGAGCACAAAATCCAACATAAGCAGCTAACAAATAGTTGTCCCGCAC]




>consensus_1539#1
ATATAGCGTATAACGCTTCGAAGTAGTGTAATTGGTTTTTCTTTTTTACTTTCACTTAAT
GTACTATTTAAAATTGTTCCTGTAATGATGTACAGTGTATTGTATAATTGTCATGATTTT
CTTTTATCAAATATCAATGAAACTAAGTTGATTAGAATTGAAAAAACTTATTCGTGCATA
ATTTTACACTAGTTGTTTCAATATATACTAATAATAATTGTGCAACTGGTAATATTGACA
ATGGTAAATTTACAGCTGAACCATGAGCTGAACCATGATAAGCACCACGTAAAATCCAGC
TACCAAGACCAACTGATTTGTGAGTACTTGTAAAAAGTGTAGCTAGTAAGATATTTCGAG
GTAACCATCGAGAGCACAAAATCCAACATAAGCAGCTAACAAATAGTTGTCCCGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1539#0      TTTAATCATTTAAATACATTAAAAAACATAAAAAAAG---AATTATTTTTATAGGCTAAC 57
consensus_1539#1      -----------ATATAGCGTATAACGCTTCGAAGTAGTGTAATTGGTTTTTCTTTTTTAC 49
                                 * ***   ** **  * *  **  **   ****  ****      * **

consensus_1539#0      TTACATATCGAGTACAAAACAAAATATATGTAATAAAAAAATAGTATATATAGACATATA 117
consensus_1539#1      TTTCACTTAATGTACTATTTAAAATTGTTCCTGTAATGATGTACAGTGTAT-----TGTA 104
                      ** **  *   **** *   *****   *    ***  *  **   * ***     * **

consensus_1539#0      TAACAGTAGTAAAAACAGATAATATATATATATAAACATAATTTCAATTAGAAAGCAGAA 177
consensus_1539#1      TAATTGTCATGATTTTCTTTTAT---CAAATATCAATGAAACT--AAGTTGAT--TAGAA 157
                      ***  **  * *       * **    * **** **   ** *  ** * **    ****

consensus_1539#0      TTCGCAAAAGAAATTATTTAAAATAATCATATAATATTTTATATTATGGAGACAACCAAC 237
consensus_1539#1      TT---GAAAAAACTTATT---------CGTGCATAATTTTACACTA----GTTGTTTCAA 201
                      **    *** ** *****         * *  *  ****** * **    *       * 

consensus_1539#0      CAGCTAGTAAACTACCTAATAATAATTGTGCAACTGGTAATATTGACAATGGTAAATTTA 297
consensus_1539#1      TATATA---------CTAATAATAATTGTGCAACTGGTAATATTGACAATGGTAAATTTA 252
                       *  **         *********************************************

consensus_1539#0      CAGCTGAACCATGAGCTGAACCATGATAAGCACCACGTAAAATCCAGCTACCAAGACCAA 357
consensus_1539#1      CAGCTGAACCATGAGCTGAACCATGATAAGCACCACGTAAAATCCAGCTACCAAGACCAA 312
                      ************************************************************

consensus_1539#0      CTGATTTGTGAGTACTTGTAAAAAGTGTAGCTAGTAAGATATTTCGAGGTAACCATCGAG 417
consensus_1539#1      CTGATTTGTGAGTACTTGTAAAAAGTGTAGCTAGTAAGATATTTCGAGGTAACCATCGAG 372
                      ************************************************************

consensus_1539#0      AGCACAAAATCCAACATAAGCAGCTAACAAATAGTTGTCCCGCACAAGCAATTAATACAC 477
consensus_1539#1      AGCACAAAATCCAACATAAGCAGCTAACAAATAGTTGTCCCGCAC--------------- 417
                      *********************************************               

consensus_1539#0      ATAATAATACATCAGAAGCTTGCAAAGATGATGCATCTATTAACAATGCATCACAA 533
consensus_1539#1      --------------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)