These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [TGCTATTACTGATCAAGAACTTGATCAGTACAAACGAGAAGTGGAACGTAAACAAAAAGGAGATATCTATGATGAGTCGCAATCAGAATCGGAAGCATTATCATCATTTAATGTCAGCCGCGCAACACATGAATCGAGCACTGCCAAAAGTCCTATTCAGTCACCTGTATCAGTAACATCGGAAACAGAAGAGGAAAGCAGAGATGAACCCCGAGTATTACGAATAGAAACGAAACAAGTGCCTGCACCAAGTCAACCTGAAGTTGTATTGAGTGATGGAGAAAATACCGTAAACGGCGATCACTCTGATGCTCATCACAGTACATTTTCTCAAAGTAGTAAAGAGACACTGCCAGGAGCAAAAGCTTATCGCAAATAAAAGAACAATTATTGAATGAAGAATTAATCCGCGAGACAGAGAAGNGTCGAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAAACGAATGAAAATAGAAAATAGGAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGC] [+] EMBL BI513282 [TGCTATTACTGATCAAGAACTTGATCAGTACAAACGAGAAGTGGAACGTAAACAAAAAGGAGATATCTATGATGAGTCGCAATCAGAATCGGAAGCATTATCATCATTTAATGTCAGCCGCGCAACACATGAATCGAGCACTGCCAAAAGTCCTATTCAGTCACCTGTATCAGTAACATCGGAAACAGAAGAGGAAAGCAGAGATGAACCCCGAGTATTACGAATAGAAACGAAACAAGTGCCTGCACCAAGTCAACCTGAAGTTGTATTGAGTGATGGAGAAAATACCGTAAACGGCGATCACTCTGATGCTCATCACAGTACATTTTCTCAAAGTAGTAAAGAGACACTGCCAGGAGCAAAAGCTTATCGCAAATAAAAGAACAATTATTGAATGAAGAATTAATCCGCGAGACAGAGAAGNGTCGAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAAACGAATGAAAATAGAAAATAGGAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGC] consensusID : consensus_1542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [TTGTGTTTTATTGCATCATGAGTAGAAATAGTTGTATTTTATGAAAGATTTTTGTTTCCGCTTTTTATTTCCAGACACTGCCAGGAGCAAAAGCTTATCGCAAATAAAAGAACAATTATTGAATGAAGAATTAATCCGCGAGACAGAGAAGAGTCGAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAAACGAATGAAAATAGAAAATAGGAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGCAACAATCACAGCATCTTTCCAGGACTCAAGACTGCCATCGCATTACGTCTACAATAAGAAACTATATTGTACTGTTAATGTTTTTACGTTTTTAATTTGTTAAAGCGTCGCGCTGAACTATTTAATCCGCTATTTAATTTTGCCTCCCCAGCCCCGTTTGTGTAATGNNATAAAACAAGACAAAAGAAATACGTCTCTAATTGACGAGA] [+] EMBL BI516777 [TTGTGTTTTATTGCATCATGAGTAGAAATAGTTGTATTTTATGAAAGATTTTTGTTTCCGCTTTTTATTTCCAGACACTGCCAGGAGCAAAAGCTTATCGCAAATAAAAGAACAATTATTGAATGAAGAATTAATCCGCGAGACAGAGAAGAGTCGAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAAACGAATGAAAATAGAAAATAGGAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGCAACAATCACAGCATCTTTCCAGGACTCAAGACTGCCATCGCATTACGTCTACAATAAGAAACTATATTGTACTGTTAATGTTTTTACGTTTTTAATTTGTTAAAGCGTCGCGCTGAACTATTTAATCCGCTATTTAATTTTGCCTCCCCAGCCCCGTTTGTGTAATGNNATAAAACAAGACAAAAGAAATACGTCTCTAATTGACGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1542#0 TGCTATTACTGATCAAGAACTTGATCAGTACAAACGAGAAGTGGAACGTAAACAAAAAGG 60 consensus_1542#1 ------TTGTGTTTTATTGCATCATGAGTAGAAAT----AGTTGTATTTTATGAAA---- 46 * ** * * * * ** **** *** *** * * * * *** consensus_1542#0 AGATATCTATGATGAGTCGCAATCAGAATCGGAAGCATTATCATCATTTAATGTCAGCCG 120 consensus_1542#1 -GATTTTTGTTTCCGCTTTTTAT-----TTCCAGACACTGCCAGGAGCAAAAGCTTATCG 100 *** * * * * ** * * ** * ** * ** * ** consensus_1542#0 CGCAACACATGAATCGAGCACTGCCAAAAGTCCTATTCAGTCACCTGTATCAGTAACATC 180 consensus_1542#1 CA-AATAAAAGAA-CAATTATTGAATGAAGA---ATTAATCCGCGAGACAGAGAAGAGTC 155 * ** * * *** * * * ** *** *** * * * * ** * ** consensus_1542#0 GGAAACAGAAGAGGAAAGCAGAGATGAACCCCGAGTATTACGAATAGAAACGAAACA-AG 239 consensus_1542#1 GAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAA-ACGAATGAAAATAGAAAATAG 214 * * * * * ** * ** * *** * * * ****** *** ** * ** consensus_1542#0 TGCCTGCACCAAGTCAACCTGAAGTTGTATTGAGTGATGGAGAAAATACCGTAAACGGCG 299 consensus_1542#1 GAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGCAACAATCACAGCATCTTTCC 274 * * * ** **** * * * * *** * ** ** * * * consensus_1542#0 ATCACTCT-GATGCTCATCACAGTACATTTTCTCAAAGTAGTAAAGAGACACTGCCAG-G 357 consensus_1542#1 AGGACTCAAGACTGCCATCGCATTACGTCTACAATAAGAAACTATATTGTACTGTTAATG 334 * **** ** **** ** *** * * * *** * * **** * * consensus_1542#0 AGCAAAAGCTTATCGCAAATAAAAGAACAATTATTGAATGAAGAATTAATCCGCGAGACA 417 consensus_1542#1 TTTTTACGTTTTTAATTTGTTAAAGCGTCGC-GCTGAACTAT---TTAATCCGC------ 384 * * ** * * **** **** * ********* consensus_1542#0 GAGAAGNGTCGAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAAACGAATGAAAAT 477 consensus_1542#1 ------TATTTAATTTTGCCTCCCCAGCCCCGTTTGTGTA--------ATGNNATAAAAC 430 * ** * ** * ** * ** ** * * **** consensus_1542#0 AGAAAATAGGAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGC 526 consensus_1542#1 AAGACAAAAGAAATACGTCTCTAATTGACGAGA---------------- 463 * * * * ****** * ** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |