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Apis mellifera
cluster # 1542 cluster # 1542       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1542#0 length = 526 sequences # 1  
 consensus_1542#1 length = 463 sequences # 1  
consensusID : consensus_1542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence 
                              [TGCTATTACTGATCAAGAACTTGATCAGTACAAACGAGAAGTGGAACGTAAACAAAAAGGAGATATCTATGATGAGTCGCAATCAGAATCGGAAGCATTATCATCATTTAATGTCAGCCGCGCAACACATGAATCGAGCACTGCCAAAAGTCCTATTCAGTCACCTGTATCAGTAACATCGGAAACAGAAGAGGAAAGCAGAGATGAACCCCGAGTATTACGAATAGAAACGAAACAAGTGCCTGCACCAAGTCAACCTGAAGTTGTATTGAGTGATGGAGAAAATACCGTAAACGGCGATCACTCTGATGCTCATCACAGTACATTTTCTCAAAGTAGTAAAGAGACACTGCCAGGAGCAAAAGCTTATCGCAAATAAAAGAACAATTATTGAATGAAGAATTAATCCGCGAGACAGAGAAGNGTCGAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAAACGAATGAAAATAGAAAATAGGAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGC]

[+] EMBL BI513282             [TGCTATTACTGATCAAGAACTTGATCAGTACAAACGAGAAGTGGAACGTAAACAAAAAGGAGATATCTATGATGAGTCGCAATCAGAATCGGAAGCATTATCATCATTTAATGTCAGCCGCGCAACACATGAATCGAGCACTGCCAAAAGTCCTATTCAGTCACCTGTATCAGTAACATCGGAAACAGAAGAGGAAAGCAGAGATGAACCCCGAGTATTACGAATAGAAACGAAACAAGTGCCTGCACCAAGTCAACCTGAAGTTGTATTGAGTGATGGAGAAAATACCGTAAACGGCGATCACTCTGATGCTCATCACAGTACATTTTCTCAAAGTAGTAAAGAGACACTGCCAGGAGCAAAAGCTTATCGCAAATAAAAGAACAATTATTGAATGAAGAATTAATCCGCGAGACAGAGAAGNGTCGAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAAACGAATGAAAATAGAAAATAGGAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGC]




>consensus_1542#0
TGCTATTACTGATCAAGAACTTGATCAGTACAAACGAGAAGTGGAACGTAAACAAAAAGG
AGATATCTATGATGAGTCGCAATCAGAATCGGAAGCATTATCATCATTTAATGTCAGCCG
CGCAACACATGAATCGAGCACTGCCAAAAGTCCTATTCAGTCACCTGTATCAGTAACATC
GGAAACAGAAGAGGAAAGCAGAGATGAACCCCGAGTATTACGAATAGAAACGAAACAAGT
GCCTGCACCAAGTCAACCTGAAGTTGTATTGAGTGATGGAGAAAATACCGTAAACGGCGA
TCACTCTGATGCTCATCACAGTACATTTTCTCAAAGTAGTAAAGAGACACTGCCAGGAGC
AAAAGCTTATCGCAAATAAAAGAACAATTATTGAATGAAGAATTAATCCGCGAGACAGAG
AAGNGTCGAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAAACGAATGAAAATAGA
AAATAGGAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGC

consensusID : consensus_1542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence 
                              [TTGTGTTTTATTGCATCATGAGTAGAAATAGTTGTATTTTATGAAAGATTTTTGTTTCCGCTTTTTATTTCCAGACACTGCCAGGAGCAAAAGCTTATCGCAAATAAAAGAACAATTATTGAATGAAGAATTAATCCGCGAGACAGAGAAGAGTCGAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAAACGAATGAAAATAGAAAATAGGAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGCAACAATCACAGCATCTTTCCAGGACTCAAGACTGCCATCGCATTACGTCTACAATAAGAAACTATATTGTACTGTTAATGTTTTTACGTTTTTAATTTGTTAAAGCGTCGCGCTGAACTATTTAATCCGCTATTTAATTTTGCCTCCCCAGCCCCGTTTGTGTAATGNNATAAAACAAGACAAAAGAAATACGTCTCTAATTGACGAGA]

[+] EMBL BI516777             [TTGTGTTTTATTGCATCATGAGTAGAAATAGTTGTATTTTATGAAAGATTTTTGTTTCCGCTTTTTATTTCCAGACACTGCCAGGAGCAAAAGCTTATCGCAAATAAAAGAACAATTATTGAATGAAGAATTAATCCGCGAGACAGAGAAGAGTCGAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAAACGAATGAAAATAGAAAATAGGAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGCAACAATCACAGCATCTTTCCAGGACTCAAGACTGCCATCGCATTACGTCTACAATAAGAAACTATATTGTACTGTTAATGTTTTTACGTTTTTAATTTGTTAAAGCGTCGCGCTGAACTATTTAATCCGCTATTTAATTTTGCCTCCCCAGCCCCGTTTGTGTAATGNNATAAAACAAGACAAAAGAAATACGTCTCTAATTGACGAGA]




>consensus_1542#1
TTGTGTTTTATTGCATCATGAGTAGAAATAGTTGTATTTTATGAAAGATTTTTGTTTCCG
CTTTTTATTTCCAGACACTGCCAGGAGCAAAAGCTTATCGCAAATAAAAGAACAATTATT
GAATGAAGAATTAATCCGCGAGACAGAGAAGAGTCGAAGATCGCAAAGCGAGTCAAAAAT
GCATATACCGGAAACGAATGAAAATAGAAAATAGGAAATAGAATATAGAAATTTGAAAAT
TGAAATAATCATGCAACAATCACAGCATCTTTCCAGGACTCAAGACTGCCATCGCATTAC
GTCTACAATAAGAAACTATATTGTACTGTTAATGTTTTTACGTTTTTAATTTGTTAAAGC
GTCGCGCTGAACTATTTAATCCGCTATTTAATTTTGCCTCCCCAGCCCCGTTTGTGTAAT
GNNATAAAACAAGACAAAAGAAATACGTCTCTAATTGACGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1542#0      TGCTATTACTGATCAAGAACTTGATCAGTACAAACGAGAAGTGGAACGTAAACAAAAAGG 60
consensus_1542#1      ------TTGTGTTTTATTGCATCATGAGTAGAAAT----AGTTGTATTTTATGAAA---- 46
                            *  ** *  *   * * ** **** ***     *** * *  * *  ***    

consensus_1542#0      AGATATCTATGATGAGTCGCAATCAGAATCGGAAGCATTATCATCATTTAATGTCAGCCG 120
consensus_1542#1      -GATTTTTGTTTCCGCTTTTTAT-----TTCCAGACACTGCCAGGAGCAAAAGCTTATCG 100
                       *** * * *      *    **     *   *  ** *  **  *   ** *     **

consensus_1542#0      CGCAACACATGAATCGAGCACTGCCAAAAGTCCTATTCAGTCACCTGTATCAGTAACATC 180
consensus_1542#1      CA-AATAAAAGAA-CAATTATTGAATGAAGA---ATTAATCCGCGAGACAGAGAAGAGTC 155
                      *  ** * * *** * *  * **    ***    *** *  * *  *    ** *   **

consensus_1542#0      GGAAACAGAAGAGGAAAGCAGAGATGAACCCCGAGTATTACGAATAGAAACGAAACA-AG 239
consensus_1542#1      GAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAA-ACGAATGAAAATAGAAAATAG 214
                      * * *  * * **  *  ** * *** *      * *  ******  ***   ** * **

consensus_1542#0      TGCCTGCACCAAGTCAACCTGAAGTTGTATTGAGTGATGGAGAAAATACCGTAAACGGCG 299
consensus_1542#1      GAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGCAACAATCACAGCATCTTTCC 274
                          *  *  *    **  ****  *  *   * * *** *  **  ** * *     * 

consensus_1542#0      ATCACTCT-GATGCTCATCACAGTACATTTTCTCAAAGTAGTAAAGAGACACTGCCAG-G 357
consensus_1542#1      AGGACTCAAGACTGCCATCGCATTACGTCTACAATAAGAAACTATATTGTACTGTTAATG 334
                      *  ****  **    **** ** *** * * *   *** *   *      ****  *  *

consensus_1542#0      AGCAAAAGCTTATCGCAAATAAAAGAACAATTATTGAATGAAGAATTAATCCGCGAGACA 417
consensus_1542#1      TTTTTACGTTTTTAATTTGTTAAAGCGTCGC-GCTGAACTAT---TTAATCCGC------ 384
                           * * ** *      * ****         ****  *    *********      

consensus_1542#0      GAGAAGNGTCGAAGATCGCAAAGCGAGTCAAAAATGCATATACCGGAAACGAATGAAAAT 477
consensus_1542#1      ------TATTTAATTTTGCCTCCCCAGCCCCGTTTGTGTA--------ATGNNATAAAAC 430
                              *  **  * **    * ** *     **  **        * *    **** 

consensus_1542#0      AGAAAATAGGAAATAGAATATAGAAATTTGAAAATTGAAATAATCATGC 526
consensus_1542#1      AAGACAAAAGAAATACGTCTCTAATTGACGAGA---------------- 463
                      *  * * * ******        *     ** *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)