cluster # 158

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Apis mellifera
cluster # 158 cluster # 158 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_158#0 length = 577 sequences # 3

consensus_158#1 length = 425 sequences # 1
consensus_158#2 length = 422 sequences # 2

consensusID : consensus_158#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 577
fasta sequence

                              [AGACAGAGCAGAAGCTGCGATGCTTGCTGTAGATAGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTAATAGATCAACTGACTCCTGGTGGACGGCTAATTTGTCCAGTTGTTGCTATAGNNGGTTTTCAAAGGTTTCAAGATCTGGTACAAGTAGATAAAAACATAGATGGTACAATCACAAAGAAAAAATTAATGCAAGTTTCCTAT]

[+] EMBL BI515541             [AGACAGAGCAGAAGCTGCGATGCTTGCTGTAGATAGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTAATAGATCAACTGACTCCTGGT                                                                                                                        ]
[+] EMBL BI513865             [                           TGTAGATAGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTAATAGATCAACTGACTCCTGGTGGACGGCTAATTTGTCCAGTTGTTGCTATAGNNGGTTTTCAAAGGTTTCAAGATCTGGTACAAGTAGATAAAAACATAGATGGTACAATCACAAAGAAAAAATTAATGCAAGTTTCCTAT]
[+] EMBL BI513953             [                           TGTAGATAGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGNTTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTAATAGATCAACTGACTCCTGGTGGACGGCTAATTTGT                                                                                                         ]




>consensus_158#0
AGACAGAGCAGAAGCTGCGATGCTTGCTGTAGATAGAGGAAACTATTATCATGAATCAAA
TCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACAT
GCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGA
TGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGG
TCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAG
CGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCG
ATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAAC
TCTACCACAACAGTTAATAGATCAACTGACTCCTGGTGGACGGCTAATTTGTCCAGTTGT
TGCTATAGNNGGTTTTCAAAGGTTTCAAGATCTGGTACAAGTAGATAAAAACATAGATGG
TACAATCACAAAGAAAAAATTAATGCAAGTTTCCTAT

consensusID : consensus_158#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [AGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTAGGTATGTACCTTGCCACGAAGAATCAAACAGGACTGTGTCCACCAACTGCGTGACTTTGCTGTGCATTATGTAAAAATAGACCAAAGACTAACAACAGGTCATTATAAAT]

[+] EMBL BI514702             [AGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTAGGTATGTACCTTGCCACGAAGAATCAAACAGGACTGTGTCCACCAACTGCGTGACTTTGCTGTGCATTATGTAAAAATAGACCAAAGACTAACAACAGGTCATTATAAAT]




>consensus_158#1
AGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTAC
AATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAA
TTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGT
ATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTA
ATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGC
GTTAAATTTGTAGTAGGTATGTACCTTGCCACGAAGAATCAAACAGGACTGTGTCCACCA
ACTGCGTGACTTTGCTGTGCATTATGTAAAAATAGACCAAAGACTAACAACAGGTCATTA
TAAAT

consensusID : consensus_158#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 422
fasta sequence

                              [AGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTTCTTTTATATTCCAGTTAATA]

[+] EMBL BI515158             [AGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTTCTTTTATATTCCAGTTAATA]
[+] EMBL BI514327             [                 TGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTTCTTTTATATTCCAGTTAATA]




>consensus_158#2
AGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTAC
AATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAA
TTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGT
ATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTA
ATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGC
GTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCG
ATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTTCTTTTATATTCCAGTTAA
TA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_158#0      AGACAGAGCAGAAGCTGCGATGCTTGCTGTAGATAGAGGAAACTATTATCATGAATCAAA 60
consensus_158#2      ----------------------------------AGAGGAAACTATTATCATGAATCAAA 26
consensus_158#1      ----------------------------------AGAGGAAACTATTATCATGAATCAAA 26
                                                       **************************

consensus_158#0      TCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACAT 120
consensus_158#2      TCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACAT 86
consensus_158#1      TCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACAT 86
                     ************************************************************

consensus_158#0      GCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGA 180
consensus_158#2      GCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGA 146
consensus_158#1      GCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGA 146
                     ************************************************************

consensus_158#0      TGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGG 240
consensus_158#2      TGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGG 206
consensus_158#1      TGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGG 206
                     ************************************************************

consensus_158#0      TCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAG 300
consensus_158#2      TCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAG 266
consensus_158#1      TCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAG 266
                     ************************************************************

consensus_158#0      CGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGG-AGACGGCC 359
consensus_158#2      CGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGG-AGACGGCC 325
consensus_158#1      CGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTAGGTATGTACCT 326
                     ************************************************ ** *     * 

consensus_158#0      GATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAA 419
consensus_158#2      GATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAA 385
consensus_158#1      TGCCACGAAGAATCA--AACAGGACTGTGTCCACCAACTGCGT---GACTTTGCTGTGCA 381
                           **          ****  **       * *    ***     *      *   *

consensus_158#0      CTCTACCACAACAGTTAATAGATCAACTGACTCCTGGTGGACGGCTAATTTGTCCAGTTG 479
consensus_158#2      CTCTACCACAACAGTT------TCTTTTATATTCCAGTTAATA----------------- 422
consensus_158#1      TTATGTAAAAATAGACCAAAGACTAACAACAGGTCATTATAAAT---------------- 425
                      * *   * ** **                       *  *                   

consensus_158#0      TTGCTATAGNNGGTTTTCAAAGGTTTCAAGATCTGGTACAAGTAGATAAAAACATAGATG 539
consensus_158#2      ------------------------------------------------------------
consensus_158#1      ------------------------------------------------------------
                                                                                 

consensus_158#0      GTACAATCACAAAGAAAAAATTAATGCAAGTTTCCTAT 577
consensus_158#2      --------------------------------------
consensus_158#1      --------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)