These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1585#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [TAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAATTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAAGACTTTAAAATTATTAATTGTACAAGGATTATGCCAGTTAACAGAAAATCATGTTACTATTCGTGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATTCTGTTCAAAATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAGATAATTTCCTTCCTTCTGATAGTTGTGGTGGTGTTGATTTATTTGCGNNTAAAGGACGTATAAAAGTTAGCAATACCTTGGAAACACGATTAGAATTAATAGCACAACAACTAATACCGGATATACGTTCTGCTCTATTTGGATGCAATCCTAATCGTAAATTCATTGATTAAAAAATTCCTTTCATATTTTCTTTTTCTCTTCTTTTCATTCTATTTTCCTTTTTAACAAAACATTCCCTTCTTTAGAATG] [+] EMBL BI506991 [TAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAATTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAAGACTTTAAAATTATTAATTGTACAAGGATTATGCCAGTTAACAGAAAATCATGTTACTATTCGTGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATTCTGTTCAAAATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAGATAATTTCCTTCCTTCTGATAGTTGTGGTGGTGTTGATTTATTTGCGNNTAAAGGACGTATAAAAGTTAGCAATACCTTGGAAACACGATTAGAATTAATAGCACAACAACTAATACCGGATATACGTTCTGCTCTATTTGGATGCAATCCTAATCGTAAATTCATTGATTAAAAAATTCCTTTCATATTTTCTTTTTCTCTTCTTTTCATTCTATTTTCCTTTTTAACAAAACATTCCCTTCTTTAGAATG] consensusID : consensus_1585#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [AACAGATTAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAATTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAAGACTTAAAATTATGGAATATTATGAGAAGAAAGAAAAACAAGTAGAACTTCAAAAAAAAATTCAATCATCTAATATGTTGAATCAAGCTCGTCTAAAAGTTCTAAAGGTTAGAGAAGATCATGTACGTAATGTATTAGATGAAGCTAGGAAAAGACTAGGAGAAGTAACAAGAGATATTTCACGATATAGAGAAATTTTAAAATTATTAATTGTACAAGGATTATGCCAGTTAACAGAAAATCATGTTACTATTCGTGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATTCTGTTCAAAATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAGATAATTTCCTTCC] [+] EMBL BI505733 [AACAGATTAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAATTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAAGACTTAAAATTATGGAATATTATGAGAAGAAAGAAAAACAAGTAGAACTTCAAAAAAAAATTCAATCATCTAATATGTTGAATCAAGCTCGTCTAAAAGTTCTAAAGGTTAGAGAAGATCATGTACGTAATGTATTAGATGAAGCTAGGAAAAGACTAGGAGAAGTAACAAGAGATATTTCACGATATAGAGAAATTTTAAAATTATTAATTGTACAAGGATTATGCCAGTTAACAGAAAATCATGTTACTATTCGTGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATTCTGTTCAAAATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAGATAATTTCCTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1585#0 -------TAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAA 53 consensus_1585#1 AACAGATTAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAA 60 ***************************************************** consensus_1585#0 TTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAA 113 consensus_1585#1 TTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAA 120 ************************************************************ consensus_1585#0 GACTTTAAAATTATTAATTGT-ACAAGGATTATGCCAGTTAA-CAGAAAATCATGTTACT 171 consensus_1585#1 GACTT-AAAATTATGGAATATTATGAGAAGAAAGAAAAACAAGTAGAACTTCAAAAAAAA 179 ***** ******** * * * * ** * * * * ** **** *** * consensus_1585#0 ATTCG--TGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATTCTGTTCAAA 229 consensus_1585#1 ATTCAATCATCTAATATGTTGAATCAAGCTCGTCTAAA--AGTTCTAAAG---GTTAGAG 234 **** ** * ** ** * * ** * **** * *** * consensus_1585#0 ATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAGATAATTTCC 289 consensus_1585#1 AAGATCATGTACGTAATGTATTAGATGAAGCTAGGAA-AAGACTAGGAGAAGTAACAAGA 293 * * * ** ** * * * * ** * * ** ** * * *** consensus_1585#0 TTCCTTCTGATAGTTGTGGTGGTGTTGATTTATTTGCGNNTAAAGGACGTATAAAAGTTA 349 consensus_1585#1 GATATTTCACGATATAGAGAAATTTTAAAATTATTAATTGTACAAGGATTATGCCAGTTA 353 ** * * * * ** * * ** ** * * *** ***** consensus_1585#0 GCAATACCTTGGAAACACGATTAGAATTAAT--AGCACAACAACTAATACCGGATATACG 407 consensus_1585#1 ACAGAAAATCATGT-TACTATTCGTGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACT 412 ** * * ** *** * * * ** * * * * * ** ** consensus_1585#0 TTCTGCTCTATTTGGATGCAATCCTAATCGTAAATTCATTGATTAAAAAATTCCTTTCAT 467 consensus_1585#1 TCTTGATTCTGTTCAA---AATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAA 469 * ** * ** * *** ** ** ** * * * ** * * * * * consensus_1585#0 ATTT--TCTTTTTCTCTTCTTTTCATTCTATTTTCCTTTTTAACAAAACATTCCCTTCTT 525 consensus_1585#1 AGTTGATCAAGATAATTTCCTTCC------------------------------------ 493 * ** ** * *** ** * consensus_1585#0 TAGAATG 532 consensus_1585#1 ------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |