cluster # 1585

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Apis mellifera
cluster # 1585 cluster # 1585 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1585#0 length = 532 sequences # 1

consensus_1585#1 length = 493 sequences # 1

consensusID : consensus_1585#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence

                              [TAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAATTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAAGACTTTAAAATTATTAATTGTACAAGGATTATGCCAGTTAACAGAAAATCATGTTACTATTCGTGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATTCTGTTCAAAATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAGATAATTTCCTTCCTTCTGATAGTTGTGGTGGTGTTGATTTATTTGCGNNTAAAGGACGTATAAAAGTTAGCAATACCTTGGAAACACGATTAGAATTAATAGCACAACAACTAATACCGGATATACGTTCTGCTCTATTTGGATGCAATCCTAATCGTAAATTCATTGATTAAAAAATTCCTTTCATATTTTCTTTTTCTCTTCTTTTCATTCTATTTTCCTTTTTAACAAAACATTCCCTTCTTTAGAATG]

[+] EMBL BI506991             [TAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAATTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAAGACTTTAAAATTATTAATTGTACAAGGATTATGCCAGTTAACAGAAAATCATGTTACTATTCGTGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATTCTGTTCAAAATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAGATAATTTCCTTCCTTCTGATAGTTGTGGTGGTGTTGATTTATTTGCGNNTAAAGGACGTATAAAAGTTAGCAATACCTTGGAAACACGATTAGAATTAATAGCACAACAACTAATACCGGATATACGTTCTGCTCTATTTGGATGCAATCCTAATCGTAAATTCATTGATTAAAAAATTCCTTTCATATTTTCTTTTTCTCTTCTTTTCATTCTATTTTCCTTTTTAACAAAACATTCCCTTCTTTAGAATG]




>consensus_1585#0
TAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAATTGATGC
TAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAAGACTTTA
AAATTATTAATTGTACAAGGATTATGCCAGTTAACAGAAAATCATGTTACTATTCGTGTC
CGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATTCTGTTCAAAATGCTTATAAA
CAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAGATAATTTCCTTCCTTCTGAT
AGTTGTGGTGGTGTTGATTTATTTGCGNNTAAAGGACGTATAAAAGTTAGCAATACCTTG
GAAACACGATTAGAATTAATAGCACAACAACTAATACCGGATATACGTTCTGCTCTATTT
GGATGCAATCCTAATCGTAAATTCATTGATTAAAAAATTCCTTTCATATTTTCTTTTTCT
CTTCTTTTCATTCTATTTTCCTTTTTAACAAAACATTCCCTTCTTTAGAATG

consensusID : consensus_1585#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence

                              [AACAGATTAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAATTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAAGACTTAAAATTATGGAATATTATGAGAAGAAAGAAAAACAAGTAGAACTTCAAAAAAAAATTCAATCATCTAATATGTTGAATCAAGCTCGTCTAAAAGTTCTAAAGGTTAGAGAAGATCATGTACGTAATGTATTAGATGAAGCTAGGAAAAGACTAGGAGAAGTAACAAGAGATATTTCACGATATAGAGAAATTTTAAAATTATTAATTGTACAAGGATTATGCCAGTTAACAGAAAATCATGTTACTATTCGTGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATTCTGTTCAAAATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAGATAATTTCCTTCC]

[+] EMBL BI505733             [AACAGATTAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAATTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAAGACTTAAAATTATGGAATATTATGAGAAGAAAGAAAAACAAGTAGAACTTCAAAAAAAAATTCAATCATCTAATATGTTGAATCAAGCTCGTCTAAAAGTTCTAAAGGTTAGAGAAGATCATGTACGTAATGTATTAGATGAAGCTAGGAAAAGACTAGGAGAAGTAACAAGAGATATTTCACGATATAGAGAAATTTTAAAATTATTAATTGTACAAGGATTATGCCAGTTAACAGAAAATCATGTTACTATTCGTGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATTCTGTTCAAAATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAGATAATTTCCTTCC]




>consensus_1585#1
AACAGATTAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAA
TTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAA
GACTTAAAATTATGGAATATTATGAGAAGAAAGAAAAACAAGTAGAACTTCAAAAAAAAA
TTCAATCATCTAATATGTTGAATCAAGCTCGTCTAAAAGTTCTAAAGGTTAGAGAAGATC
ATGTACGTAATGTATTAGATGAAGCTAGGAAAAGACTAGGAGAAGTAACAAGAGATATTT
CACGATATAGAGAAATTTTAAAATTATTAATTGTACAAGGATTATGCCAGTTAACAGAAA
ATCATGTTACTATTCGTGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATT
CTGTTCAAAATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAG
ATAATTTCCTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1585#0      -------TAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAA 53
consensus_1585#1      AACAGATTAATCATATGATGGCATTCATTGAACAAGAAGCCAATGAAAAAGCAGAAGAAA 60
                             *****************************************************

consensus_1585#0      TTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAA 113
consensus_1585#1      TTGATGCTAAAGCAGAAGAAGAATTTAATATTGAAAAAGGACGTTTAGTTCAACAACAAA 120
                      ************************************************************

consensus_1585#0      GACTTTAAAATTATTAATTGT-ACAAGGATTATGCCAGTTAA-CAGAAAATCATGTTACT 171
consensus_1585#1      GACTT-AAAATTATGGAATATTATGAGAAGAAAGAAAAACAAGTAGAACTTCAAAAAAAA 179
                      ***** ********  * * * *  ** *  * *  *   **  ****  ***    *  

consensus_1585#0      ATTCG--TGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACTTCTTGATTCTGTTCAAA 229
consensus_1585#1      ATTCAATCATCTAATATGTTGAATCAAGCTCGTCTAAA--AGTTCTAAAG---GTTAGAG 234
                      ****     **    * ** **       * *    **  * ****  *    ***  * 

consensus_1585#0      ATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAAAGTTGATCAAGATAATTTCC 289
consensus_1585#1      AAGATCATGTACGTAATGTATTAGATGAAGCTAGGAA-AAGACTAGGAGAAGTAACAAGA 293
                      * * * **  **  *    *  * * ** *  * **  **   *     *  ***     

consensus_1585#0      TTCCTTCTGATAGTTGTGGTGGTGTTGATTTATTTGCGNNTAAAGGACGTATAAAAGTTA 349
consensus_1585#1      GATATTTCACGATATAGAGAAATTTTAAAATTATTAATTGTACAAGGATTATGCCAGTTA 353
                          **     *  *   *   * ** *  *  **     ** * *   ***   *****

consensus_1585#0      GCAATACCTTGGAAACACGATTAGAATTAAT--AGCACAACAACTAATACCGGATATACG 407
consensus_1585#1      ACAGAAAATCATGT-TACTATTCGTGTCCGTCAAGTAGATCTTCCTTTGGTAGAATCACT 412
                       **  *  *       ** *** *  *   *  ** * * *  *   *    **   ** 

consensus_1585#0      TTCTGCTCTATTTGGATGCAATCCTAATCGTAAATTCATTGATTAAAAAATTCCTTTCAT 467
consensus_1585#1      TCTTGATTCTGTTCAA---AATGCTTATAAACAAATAACAAAAAAAGATGTCACGATTAA 469
                      *  ** *    **  *   *** ** **    ** * *   *  ** *  *  *  * * 

consensus_1585#0      ATTT--TCTTTTTCTCTTCTTTTCATTCTATTTTCCTTTTTAACAAAACATTCCCTTCTT 525
consensus_1585#1      AGTTGATCAAGATAATTTCCTTCC------------------------------------ 493
                      * **  **    *   *** ** *                                    

consensus_1585#0      TAGAATG 532
consensus_1585#1      -------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)