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Apis mellifera
cluster # 1596 cluster # 1596       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1596#0 length = 526 sequences # 1  
 consensus_1596#1 length = 399 sequences # 1  
consensusID : consensus_1596#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence 
                              [TTTCTCTACTCGTCATGTTTTTCTTTTTTGACAGCATGCAAATGCTTGTAGCAATCTGTACAGCTATTGTAGCTGCAGTTGCACTGGCATTTCTTCTTTTACCCATGTGTCAATATATTATTAGACCATGTTCAGATGGTAATAAAATATCCTTTGGTGTATGTGGAAGGTTTACTGGTGCAGAATTACTTTCATTTTCATTAAGTGTGAGTATAGTATGCATTTGGGTACTGACTGGACATTGGCTTCTTATGGACGCAATGGGTATGGGACTATGTGTAGCATTCATTGCATTCATTCGATTACCTAGTCTAAAGGTAGCAACTAGACCAGCAGATAATCCAGTGAATCTTGTGGCTAGAAGGTTGCACTTNNNTGGTGTAGCGAGAGAAGCACCAAAACTTCCATTACCTGGAAAATTAGTATTTCCATCGATGCATCAAGCAGGACATTTTTCAATGTTAGGTCTTGGCGATGTTGTTATGCCANNACTATTGCTTTGCTTCGTTTTACGATATGACGCGTA]

[+] EMBL BI512814             [TTTCTCTACTCGTCATGTTTTTCTTTTTTGACAGCATGCAAATGCTTGTAGCAATCTGTACAGCTATTGTAGCTGCAGTTGCACTGGCATTTCTTCTTTTACCCATGTGTCAATATATTATTAGACCATGTTCAGATGGTAATAAAATATCCTTTGGTGTATGTGGAAGGTTTACTGGTGCAGAATTACTTTCATTTTCATTAAGTGTGAGTATAGTATGCATTTGGGTACTGACTGGACATTGGCTTCTTATGGACGCAATGGGTATGGGACTATGTGTAGCATTCATTGCATTCATTCGATTACCTAGTCTAAAGGTAGCAACTAGACCAGCAGATAATCCAGTGAATCTTGTGGCTAGAAGGTTGCACTTNNNTGGTGTAGCGAGAGAAGCACCAAAACTTCCATTACCTGGAAAATTAGTATTTCCATCGATGCATCAAGCAGGACATTTTTCAATGTTAGGTCTTGGCGATGTTGTTATGCCANNACTATTGCTTTGCTTCGTTTTACGATATGACGCGTA]




>consensus_1596#0
TTTCTCTACTCGTCATGTTTTTCTTTTTTGACAGCATGCAAATGCTTGTAGCAATCTGTA
CAGCTATTGTAGCTGCAGTTGCACTGGCATTTCTTCTTTTACCCATGTGTCAATATATTA
TTAGACCATGTTCAGATGGTAATAAAATATCCTTTGGTGTATGTGGAAGGTTTACTGGTG
CAGAATTACTTTCATTTTCATTAAGTGTGAGTATAGTATGCATTTGGGTACTGACTGGAC
ATTGGCTTCTTATGGACGCAATGGGTATGGGACTATGTGTAGCATTCATTGCATTCATTC
GATTACCTAGTCTAAAGGTAGCAACTAGACCAGCAGATAATCCAGTGAATCTTGTGGCTA
GAAGGTTGCACTTNNNTGGTGTAGCGAGAGAAGCACCAAAACTTCCATTACCTGGAAAAT
TAGTATTTCCATCGATGCATCAAGCAGGACATTTTTCAATGTTAGGTCTTGGCGATGTTG
TTATGCCANNACTATTGCTTTGCTTCGTTTTACGATATGACGCGTA

consensusID : consensus_1596#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence 
                              [CAAATGCTTGTAGCAATCTGTACAGCTATTGTAGCTGCAGTTGCACTGGCATTTCTTCTTTTACCCATGTGTCAATATATTATTAGACCATGTTCAGATGGTAATAAAATATCCTTTGGTGTATGTGGAAGGTTTACTGGTGCAGAATTACTTTCATTTTCATTAAGTGTGAGTATAGTATGCATTTGGGTACTGACTGGACATTGGCTTCTTATGGACGCAATGGGTATGGGACTATGTGTAGCATTCATTGCATTCATTCGATTACCTAGTCTAAAGGTATCCACCATATTATTAACTGGATTACTCATTTATGATGTCTTCTGGGTTTTCTTTTCATCCTATATATTCAGCACAAATGTAATGGTTAAGGTAGCAACTAGACCAGCAGATAATCCA]

[+] EMBL BI511182             [CAAATGCTTGTAGCAATCTGTACAGCTATTGTAGCTGCAGTTGCACTGGCATTTCTTCTTTTACCCATGTGTCAATATATTATTAGACCATGTTCAGATGGTAATAAAATATCCTTTGGTGTATGTGGAAGGTTTACTGGTGCAGAATTACTTTCATTTTCATTAAGTGTGAGTATAGTATGCATTTGGGTACTGACTGGACATTGGCTTCTTATGGACGCAATGGGTATGGGACTATGTGTAGCATTCATTGCATTCATTCGATTACCTAGTCTAAAGGTATCCACCATATTATTAACTGGATTACTCATTTATGATGTCTTCTGGGTTTTCTTTTCATCCTATATATTCAGCACAAATGTAATGGTTAAGGTAGCAACTAGACCAGCAGATAATCCA]




>consensus_1596#1
CAAATGCTTGTAGCAATCTGTACAGCTATTGTAGCTGCAGTTGCACTGGCATTTCTTCTT
TTACCCATGTGTCAATATATTATTAGACCATGTTCAGATGGTAATAAAATATCCTTTGGT
GTATGTGGAAGGTTTACTGGTGCAGAATTACTTTCATTTTCATTAAGTGTGAGTATAGTA
TGCATTTGGGTACTGACTGGACATTGGCTTCTTATGGACGCAATGGGTATGGGACTATGT
GTAGCATTCATTGCATTCATTCGATTACCTAGTCTAAAGGTATCCACCATATTATTAACT
GGATTACTCATTTATGATGTCTTCTGGGTTTTCTTTTCATCCTATATATTCAGCACAAAT
GTAATGGTTAAGGTAGCAACTAGACCAGCAGATAATCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1596#0      TTTCTCTACTCGTCATGTTTTTCTTTTTTGACAGCATGCAAATGCTTGTAGCAATCTGTA 60
consensus_1596#1      --------------------------------------CAAATGCTTGTAGCAATCTGTA 22
                                                            **********************

consensus_1596#0      CAGCTATTGTAGCTGCAGTTGCACTGGCATTTCTTCTTTTACCCATGTGTCAATATATTA 120
consensus_1596#1      CAGCTATTGTAGCTGCAGTTGCACTGGCATTTCTTCTTTTACCCATGTGTCAATATATTA 82
                      ************************************************************

consensus_1596#0      TTAGACCATGTTCAGATGGTAATAAAATATCCTTTGGTGTATGTGGAAGGTTTACTGGTG 180
consensus_1596#1      TTAGACCATGTTCAGATGGTAATAAAATATCCTTTGGTGTATGTGGAAGGTTTACTGGTG 142
                      ************************************************************

consensus_1596#0      CAGAATTACTTTCATTTTCATTAAGTGTGAGTATAGTATGCATTTGGGTACTGACTGGAC 240
consensus_1596#1      CAGAATTACTTTCATTTTCATTAAGTGTGAGTATAGTATGCATTTGGGTACTGACTGGAC 202
                      ************************************************************

consensus_1596#0      ATTGGCTTCTTATGGACGCAATGGGTATGGGACTATGTGTAGCATTCATTGCATTCATTC 300
consensus_1596#1      ATTGGCTTCTTATGGACGCAATGGGTATGGGACTATGTGTAGCATTCATTGCATTCATTC 262
                      ************************************************************

consensus_1596#0      GATTACCTAGTCTAAAGGTAGCAACTAGACCAGCAGATAATCCAGTGAATCTTG-TGGCT 359
consensus_1596#1      GATTACCTAGTCTAAAGGTATCCACCATATTATTAACTGGATTACTCATTTATGATGTCT 322
                      ******************** * ** * *  *  *  *     * * * *  ** ** **

consensus_1596#0      AGAAGGTTGCACTTNNNTGGTGTAGCGAGAGAAGCACCAAAACTTCCATTACCTGGAAAA 419
consensus_1596#1      TCTGGGTTTTCTTTTCATCCTATAT------ATTCAGCACAAATGTAATGGTTAAGGTAG 376
                          ****    **   *  * **       *  ** ** ** *   **      *  * 

consensus_1596#0      TTAGTATTTCCATCGATGCATCAAGCAGGACATTTTTCAATGTTAGGTCTTGGCGATGTT 479
consensus_1596#1      CAACTAGACCAGCAGATAATCCA------------------------------------- 399
                        * **   *    ***    **                                     

consensus_1596#0      GTTATGCCANNACTATTGCTTTGCTTCGTTTTACGATATGACGCGTA 526
consensus_1596#1      -----------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)