Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 163 cluster # 163       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_163#0 length = 598 sequences # 4  
consensus_163#1 length = 592 sequences # 2  

consensusID : consensus_163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 598
fasta sequence
                              [AGCGGATATTGCATAGTCGGGCAATTGGTTTTAATGTCGATCGTCTTTTTCTTTTCTATTGTCTTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTG]

[+] EMBL BI507600             [AGCGGATATTGCATAGTCGGGCAATTGGTTTTAATGTCGATCGTCTTTTTCTTTTCTATTGTCTTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCAC                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI515896             [                                                               TTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGNGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCAC                                                                                                                  ]
[+] EMBL BI515820             [                                                                                               CGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTG]
[+] EMBL BI512867             [                                                                                               CGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAAT                                                ]


>consensus_163#0 AGCGGATATTGCATAGTCGGGCAATTGGTTTTAATGTCGATCGTCTTTTTCTTTTCTATT GTCTTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGC AAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACAC GGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCG CACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAAT TGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGA CTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCA GTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACG GCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACG AATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTG



consensusID : consensus_163#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 592
fasta sequence
                              [GTAAAAAGAAAAACGCAAATATATGAAACGCGTATATGTTTTCCGGTCCCTTACAGAAAAATCACTGATATTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTGGAGTAAATCGTATGCTAGGAAAATGCATATGCCTGCGCTTAATTTGAACGAAGCTCCGGTTTCGCAGGAAAGACCTGAACTAGAGGATTTAAGTAGCGAAGATGAGGCTGTTGCAACTGATTTGGACATGCATGCTTTGATCTTGTCCAGTAGCACCGATACTCAT]

[+] EMBL BI503825             [GTAAAAAGAAAAACGCAAATATATGAAACGCGTATATGTTTTCCGGTCCCTTACAGAAAAATCACTGATATTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTGGAGTAAATCGTATGCTAGGAAAATGCATATGCCTGCGCTTAATTTGAACGAAGCTCCGGTTTCGCAGGAAAGACCTGAACTAGAGGATTTAAGTAGCGAAGATGAGGCTGTTGCAACTGATTTGGACATGCATGCTTTGATCTTGTCCAGTAGCACCGATACTCAT]
[+] EMBL BI511126             [GTAAAAAGAAAAACGCAAATATATGAAACGCGTATATGTTTTCCGGTCCCTTACAGAAAAATCACTGATATTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTG                                                                                                                                                                      ]


>consensus_163#1 GTAAAAAGAAAAACGCAAATATATGAAACGCGTATATGTTTTCCGGTCCCTTACAGAAAA ATCACTGATATTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGA AAAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGA GCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTT CAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCG CGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAAT TATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAAT CGATTGGAGTAAATCGTATGCTAGGAAAATGCATATGCCTGCGCTTAATTTGAACGAAGC TCCGGTTTCGCAGGAAAGACCTGAACTAGAGGATTTAAGTAGCGAAGATGAGGCTGTTGC AACTGATTTGGACATGCATGCTTTGATCTTGTCCAGTAGCACCGATACTCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_163#0      AGCGGATATTGCATAGTCGGGCAATTGGTTTTAATGTCGATCGTCTTTTTCTTTTCTATT 60
consensus_163#1      ------------------------------------------------------------
                                                                                 

consensus_163#0      GTCTTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGC 120
consensus_163#1      ------------------------------------------------------------
                                                                                 

consensus_163#0      AAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACAC 180
consensus_163#1      --------------------------------------------------GTAAAAAGAA 10
                                                                        *    * * 

consensus_163#0      GGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCG 240
consensus_163#1      AAACGCAAATATATGAAACG-CGTATATGTTTTCCG-GTCCCTTACAGAAAAATCACTGA 68
                        *   ***    ** * * **   * * *  *** **        **   * * **  

consensus_163#0      CACGATTCGAGGAGGAAGACA--CGGCCAGCT-TGAAGAATATGAATTTACTGACAGAAC 297
consensus_163#1      TA---TTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAAC 125
                      *   **  *     ** ***  **  *   * **    *   * ** **     * ***

consensus_163#0      AATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAG 357
consensus_163#1      AATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAG 185
                     ************************************************************

consensus_163#0      CGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCG 417
consensus_163#1      CGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCG 245
                     ************************************************************

consensus_163#0      GCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATT 477
consensus_163#1      GCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATT 305
                     ************************************************************

consensus_163#0      ACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGA 537
consensus_163#1      ACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGA 365
                     ************************************************************

consensus_163#0      ACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATT 597
consensus_163#1      ACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATT 425
                     ************************************************************

consensus_163#0      G----------------------------------------------------------- 598
consensus_163#1      GGAGTAAATCGTATGCTAGGAAAATGCATATGCCTGCGCTTAATTTGAACGAAGCTCCGG 485
                     *                                                           

consensus_163#0      ------------------------------------------------------------
consensus_163#1      TTTCGCAGGAAAGACCTGAACTAGAGGATTTAAGTAGCGAAGATGAGGCTGTTGCAACTG 545
                                                                                 

consensus_163#0      -----------------------------------------------
consensus_163#1      ATTTGGACATGCATGCTTTGATCTTGTCCAGTAGCACCGATACTCAT 592
                                                                    




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)