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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 598 fasta sequence
[AGCGGATATTGCATAGTCGGGCAATTGGTTTTAATGTCGATCGTCTTTTTCTTTTCTATTGTCTTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTG]
[+] EMBL BI507600 [AGCGGATATTGCATAGTCGGGCAATTGGTTTTAATGTCGATCGTCTTTTTCTTTTCTATTGTCTTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCAC ]
[+] EMBL BI515896 [ TTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGNGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCAC ]
[+] EMBL BI515820 [ CGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTG]
[+] EMBL BI512867 [ CGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAAT ]
consensusID : consensus_163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 592 fasta sequence
[GTAAAAAGAAAAACGCAAATATATGAAACGCGTATATGTTTTCCGGTCCCTTACAGAAAAATCACTGATATTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTGGAGTAAATCGTATGCTAGGAAAATGCATATGCCTGCGCTTAATTTGAACGAAGCTCCGGTTTCGCAGGAAAGACCTGAACTAGAGGATTTAAGTAGCGAAGATGAGGCTGTTGCAACTGATTTGGACATGCATGCTTTGATCTTGTCCAGTAGCACCGATACTCAT]
[+] EMBL BI503825 [GTAAAAAGAAAAACGCAAATATATGAAACGCGTATATGTTTTCCGGTCCCTTACAGAAAAATCACTGATATTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTGGAGTAAATCGTATGCTAGGAAAATGCATATGCCTGCGCTTAATTTGAACGAAGCTCCGGTTTCGCAGGAAAGACCTGAACTAGAGGATTTAAGTAGCGAAGATGAGGCTGTTGCAACTGATTTGGACATGCATGCTTTGATCTTGTCCAGTAGCACCGATACTCAT]
[+] EMBL BI511126 [GTAAAAAGAAAAACGCAAATATATGAAACGCGTATATGTTTTCCGGTCCCTTACAGAAAAATCACTGATATTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_163#0 AGCGGATATTGCATAGTCGGGCAATTGGTTTTAATGTCGATCGTCTTTTTCTTTTCTATT 60
consensus_163#1 ------------------------------------------------------------
consensus_163#0 GTCTTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGC 120
consensus_163#1 ------------------------------------------------------------
consensus_163#0 AAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACAC 180
consensus_163#1 --------------------------------------------------GTAAAAAGAA 10
* * *
consensus_163#0 GGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCG 240
consensus_163#1 AAACGCAAATATATGAAACG-CGTATATGTTTTCCG-GTCCCTTACAGAAAAATCACTGA 68
* *** ** * * ** * * * *** ** ** * * **
consensus_163#0 CACGATTCGAGGAGGAAGACA--CGGCCAGCT-TGAAGAATATGAATTTACTGACAGAAC 297
consensus_163#1 TA---TTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAAC 125
* ** * ** *** ** * * ** * * ** ** * ***
consensus_163#0 AATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAG 357
consensus_163#1 AATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAG 185
************************************************************
consensus_163#0 CGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCG 417
consensus_163#1 CGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCG 245
************************************************************
consensus_163#0 GCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATT 477
consensus_163#1 GCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATT 305
************************************************************
consensus_163#0 ACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGA 537
consensus_163#1 ACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGA 365
************************************************************
consensus_163#0 ACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATT 597
consensus_163#1 ACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATT 425
************************************************************
consensus_163#0 G----------------------------------------------------------- 598
consensus_163#1 GGAGTAAATCGTATGCTAGGAAAATGCATATGCCTGCGCTTAATTTGAACGAAGCTCCGG 485
*
consensus_163#0 ------------------------------------------------------------
consensus_163#1 TTTCGCAGGAAAGACCTGAACTAGAGGATTTAAGTAGCGAAGATGAGGCTGTTGCAACTG 545
consensus_163#0 -----------------------------------------------
consensus_163#1 ATTTGGACATGCATGCTTTGATCTTGTCCAGTAGCACCGATACTCAT 592
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |