These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [TGGAATATATATACCGTTTACCATTTTTAGCATTAGAAGTACCTAACTTAAAATTAAAGAANNNATCATGGTTTGTGAAACCTAGTGCTATGATAGTTTTTTCATTTATACTTTTATCATATTTNNTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAANNNCCTAGTGTAGGCTCAACAACAGATGAACATGGCCATACAANNNCTGGNGCATTTATGCCGTATCGAGTAAATGGGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTTTTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAATATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAATGAAACTACCGGGATATCTGCAATCATAAATTTAATAGATTTAAAATAATATGGCAAATTGAGCTTAAAACTCAATATTTTGTACTCATCAAAACTATTACATTTTGTATTAAATATGTGGATTAGAAATGTGATTTATAAATAATATTATAAAAAAATTCTGTCA] [+] EMBL BI505462 [TGGAATATATATACCGTTTACCATTTTTAGCATTAGAAGTACCTAACTTAAAATTAAAGAANNNATCATGGTTTGTGAAACCTAGTGCTATGATAGTTTTTTCATTTATACTTTTATCATATTTNNTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAANNNCCTAGTGTAGGCTCAACAACAGATGAACATGGCCATACAANNNCTGGNGCATTTATGCCGTATCGAGTAAATGGGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTTTTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAATATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAATGAAACTACCGGGATATCTGCAATCATAAATTTAATAGATTTAAAATAATATGGCAAATTGAGCTTAAAACTCAATATTTTGTACTCATCAAAACTATTACATTTTGTATTAAATATGTGGATTAGAAATGTGATTTATAAATAATATTATAAAAAAATTCTGTCA] consensusID : consensus_1665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [TGATAGTTTTTTCATTTATACTTTTATCATATTTTCTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAACCACCTAGTGTAGGCTCAACAACAGATGAACATGGCCATACAAGACCTGTAGCATTTATGCCGTATCGAGTAAATGGGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTTTTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAATATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAATGAAACTACCGTAAGATTTATATATATATATATATATTATATATTGTAATTTATAAAAGAACAAATAACACATTAATTAATTTATAAATACATTTTTTATATTTCTTTATACATTTAAATGAGACTTATTTACATACTTTTTTGTAATATACA] [+] EMBL BI513613 [TGATAGTTTTTTCATTTATACTTTTATCATATTTTCTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAACCACCTAGTGTAGGCTCAACAACAGATGAACATGGCCATACAAGACCTGTAGCATTTATGCCGTATCGAGTAAATGGGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTTTTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAATATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAATGAAACTACCGTAAGATTTATATATATATATATATATTATATATTGTAATTTATAAAAGAACAAATAACACATTAATTAATTTATAAATACATTTTTTATATTTCTTTATACATTTAAATGAGACTTATTTACATACTTTTTTGTAATATACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1665#0 TGGAATATATATACCGTTTACCATTTTTAGCATTAGAAGTACCTAACTTAAAATTAAAGA 60 consensus_1665#1 ------------------------------------------------------------ consensus_1665#0 ANNNATCATGGTTTGTGAAACCTAGTGCTATGATAGTTTTTTCATTTATACTTTTATCAT 120 consensus_1665#1 ------------------------------TGATAGTTTTTTCATTTATACTTTTATCAT 30 ****************************** consensus_1665#0 ATTTNNTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAANNNCCTAGTGTAGGCT 180 consensus_1665#1 ATTTTCTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAACCACCTAGTGTAGGCT 90 **** ************************************** ************* consensus_1665#0 CAACAACAGATGAACATGGCCATACAANNNCTGGNGCATTTATGCCGTATCGAGTAAATG 240 consensus_1665#1 CAACAACAGATGAACATGGCCATACAAGACCTGTAGCATTTATGCCGTATCGAGTAAATG 150 *************************** *** ************************* consensus_1665#0 GGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTT 300 consensus_1665#1 GGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTT 210 ************************************************************ consensus_1665#0 TTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAA 360 consensus_1665#1 TTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAA 270 ************************************************************ consensus_1665#0 TATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAA 420 consensus_1665#1 TATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAA 330 ************************************************************ consensus_1665#0 TGAAACTACCGGGATATCTGCAATCATAAATTTAATAGATTTAAAATAATATGGCAAATT 480 consensus_1665#1 TGAAACTACCGTAAGATTTATATATATATATATATATTATATATTGTAATTTATAAAA-- 388 *********** * ** * * *** ** ** ** ** **** * *** consensus_1665#0 GAGCTTAAAACTCAATATTTTGTACTCATCAAAAC-TATTACATTTTGTATTAAATATGT 539 consensus_1665#1 GAACAAATAACACATTAATT--AATTTATAAATACATTTTTTATATTTCTTTATACATTT 446 ** * * *** ** ** ** * * ** ** ** * ** ** ** *** * ** * consensus_1665#0 GGATTAGAAATGTGATTTATAAATAATATTATAAAAAAATTCTGTCA 586 consensus_1665#1 AAATGAGACTT---ATTTACATACTTTTTTGTAATATACA------- 483 ** *** * ***** * * * ** *** * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |