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Apis mellifera
cluster # 1665 cluster # 1665       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1665#0 length = 586 sequences # 1  
 consensus_1665#1 length = 483 sequences # 1  
consensusID : consensus_1665#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence 
                              [TGGAATATATATACCGTTTACCATTTTTAGCATTAGAAGTACCTAACTTAAAATTAAAGAANNNATCATGGTTTGTGAAACCTAGTGCTATGATAGTTTTTTCATTTATACTTTTATCATATTTNNTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAANNNCCTAGTGTAGGCTCAACAACAGATGAACATGGCCATACAANNNCTGGNGCATTTATGCCGTATCGAGTAAATGGGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTTTTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAATATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAATGAAACTACCGGGATATCTGCAATCATAAATTTAATAGATTTAAAATAATATGGCAAATTGAGCTTAAAACTCAATATTTTGTACTCATCAAAACTATTACATTTTGTATTAAATATGTGGATTAGAAATGTGATTTATAAATAATATTATAAAAAAATTCTGTCA]

[+] EMBL BI505462             [TGGAATATATATACCGTTTACCATTTTTAGCATTAGAAGTACCTAACTTAAAATTAAAGAANNNATCATGGTTTGTGAAACCTAGTGCTATGATAGTTTTTTCATTTATACTTTTATCATATTTNNTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAANNNCCTAGTGTAGGCTCAACAACAGATGAACATGGCCATACAANNNCTGGNGCATTTATGCCGTATCGAGTAAATGGGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTTTTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAATATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAATGAAACTACCGGGATATCTGCAATCATAAATTTAATAGATTTAAAATAATATGGCAAATTGAGCTTAAAACTCAATATTTTGTACTCATCAAAACTATTACATTTTGTATTAAATATGTGGATTAGAAATGTGATTTATAAATAATATTATAAAAAAATTCTGTCA]




>consensus_1665#0
TGGAATATATATACCGTTTACCATTTTTAGCATTAGAAGTACCTAACTTAAAATTAAAGA
ANNNATCATGGTTTGTGAAACCTAGTGCTATGATAGTTTTTTCATTTATACTTTTATCAT
ATTTNNTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAANNNCCTAGTGTAGGCT
CAACAACAGATGAACATGGCCATACAANNNCTGGNGCATTTATGCCGTATCGAGTAAATG
GGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTT
TTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAA
TATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAA
TGAAACTACCGGGATATCTGCAATCATAAATTTAATAGATTTAAAATAATATGGCAAATT
GAGCTTAAAACTCAATATTTTGTACTCATCAAAACTATTACATTTTGTATTAAATATGTG
GATTAGAAATGTGATTTATAAATAATATTATAAAAAAATTCTGTCA

consensusID : consensus_1665#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence 
                              [TGATAGTTTTTTCATTTATACTTTTATCATATTTTCTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAACCACCTAGTGTAGGCTCAACAACAGATGAACATGGCCATACAAGACCTGTAGCATTTATGCCGTATCGAGTAAATGGGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTTTTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAATATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAATGAAACTACCGTAAGATTTATATATATATATATATATTATATATTGTAATTTATAAAAGAACAAATAACACATTAATTAATTTATAAATACATTTTTTATATTTCTTTATACATTTAAATGAGACTTATTTACATACTTTTTTGTAATATACA]

[+] EMBL BI513613             [TGATAGTTTTTTCATTTATACTTTTATCATATTTTCTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAACCACCTAGTGTAGGCTCAACAACAGATGAACATGGCCATACAAGACCTGTAGCATTTATGCCGTATCGAGTAAATGGGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTTTTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAATATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAATGAAACTACCGTAAGATTTATATATATATATATATATTATATATTGTAATTTATAAAAGAACAAATAACACATTAATTAATTTATAAATACATTTTTTATATTTCTTTATACATTTAAATGAGACTTATTTACATACTTTTTTGTAATATACA]




>consensus_1665#1
TGATAGTTTTTTCATTTATACTTTTATCATATTTTCTAGTAACTGGAGGTATAATATATG
ATGTAATTGTGGAACCACCTAGTGTAGGCTCAACAACAGATGAACATGGCCATACAAGAC
CTGTAGCATTTATGCCGTATCGAGTAAATGGGCAATATATTATGGAAGGATTGGCATCTA
GTTTCCTTTTTACATTAGGTGGAATTGGTTTTATAGTATTAGATCAAACACATAATCCAT
CAACACCTAAGCTTAATAGAATTCTTTTAATATGTGTTGGATTTATTAGTGTTATTGTCT
CATTTATTACCTGTTGGGTTTTTATGAGAATGAAACTACCGTAAGATTTATATATATATA
TATATATTATATATTGTAATTTATAAAAGAACAAATAACACATTAATTAATTTATAAATA
CATTTTTTATATTTCTTTATACATTTAAATGAGACTTATTTACATACTTTTTTGTAATAT
ACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1665#0      TGGAATATATATACCGTTTACCATTTTTAGCATTAGAAGTACCTAACTTAAAATTAAAGA 60
consensus_1665#1      ------------------------------------------------------------
                                                                                  

consensus_1665#0      ANNNATCATGGTTTGTGAAACCTAGTGCTATGATAGTTTTTTCATTTATACTTTTATCAT 120
consensus_1665#1      ------------------------------TGATAGTTTTTTCATTTATACTTTTATCAT 30
                                                    ******************************

consensus_1665#0      ATTTNNTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAANNNCCTAGTGTAGGCT 180
consensus_1665#1      ATTTTCTAGTAACTGGAGGTATAATATATGATGTAATTGTGGAACCACCTAGTGTAGGCT 90
                      ****  **************************************   *************

consensus_1665#0      CAACAACAGATGAACATGGCCATACAANNNCTGGNGCATTTATGCCGTATCGAGTAAATG 240
consensus_1665#1      CAACAACAGATGAACATGGCCATACAAGACCTGTAGCATTTATGCCGTATCGAGTAAATG 150
                      ***************************   ***  *************************

consensus_1665#0      GGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTT 300
consensus_1665#1      GGCAATATATTATGGAAGGATTGGCATCTAGTTTCCTTTTTACATTAGGTGGAATTGGTT 210
                      ************************************************************

consensus_1665#0      TTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAA 360
consensus_1665#1      TTATAGTATTAGATCAAACACATAATCCATCAACACCTAAGCTTAATAGAATTCTTTTAA 270
                      ************************************************************

consensus_1665#0      TATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAA 420
consensus_1665#1      TATGTGTTGGATTTATTAGTGTTATTGTCTCATTTATTACCTGTTGGGTTTTTATGAGAA 330
                      ************************************************************

consensus_1665#0      TGAAACTACCGGGATATCTGCAATCATAAATTTAATAGATTTAAAATAATATGGCAAATT 480
consensus_1665#1      TGAAACTACCGTAAGATTTATATATATATATATATATTATATATTGTAATTTATAAAA-- 388
                      ***********  * ** *  *   *** ** **    ** **   **** *   ***  

consensus_1665#0      GAGCTTAAAACTCAATATTTTGTACTCATCAAAAC-TATTACATTTTGTATTAAATATGT 539
consensus_1665#1      GAACAAATAACACATTAATT--AATTTATAAATACATTTTTTATATTTCTTTATACATTT 446
                      ** *  * *** ** ** **   * * ** ** ** * **  ** **   *** * ** *

consensus_1665#0      GGATTAGAAATGTGATTTATAAATAATATTATAAAAAAATTCTGTCA 586
consensus_1665#1      AAATGAGACTT---ATTTACATACTTTTTTGTAATATACA------- 483
                        ** ***  *   ***** * *   * ** *** * *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)