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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence
[ACTATACGGATTTGAGACATACCCTGCGAGAAAATATTGGACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTGTTTCAAGGAGGGTGAGTGGATATTTTCACGTTAATTCTCGTCCTCCGCCTCGCATATACGTTACGATTCTAACCGGATTATATAATCGTAGATCGGGTTAATTCTAATCGTTTATCGAAGTGGGAATACGCGAAATTACGCCGCAGCTAACAAACACTACGAATCGATCGGACGTCCTAGCGACCGCATTCTACTATATACTGCAGTATCGTACAAAATATACTATTCCAGAAGGTTCCGATTCATTATATATTTCGATTGTGCCGTCGTTTTCTGCGCAAATTCGGTGTGCATCACAACGTTACACAGACGAATATACGGTAACGTGAGCCGGTTTGCAAAATTCAGTCACATGCGTTGATGCTGCGTGTTACGTAACGAGGTTAGTGTTAGCAACGTAAAAAAAACGTTTCAATGACGACTGTCCCGCCTATCGTCGTTC]
[+] EMBL BI509156 [ACTATACGGATTTGAGACATACCCTGCGAGAAAATATTGGACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTGTTTCAAGGAGGGTGAGTGGATATTTTCACGTTAATTCTCGTCCTCCGCCTCGCATATACGTTACGATTCTAACCGGATTATATAATCGTAGATCGGGTTAATTCTAATCGTTTATCGAAGTGGGAATACGCGAAATTACGCCGCAGCTAACAAACACTACGAATCGATCGGACGTCCTAGCGACCGCATTCTACTATATACTGCAGTATCGTACAAAATATACTATTCCAGAAGGTTCCGATTCATTATATATTTCGATTGTGCCGTCGTTTTCTGCGCAAATTCGGTGTGCATCACAACGTTACACAGACGAATATACGGTAACGTGAGCCGGTTTGCAAAATTCAGTCACATGCGTTGATGCTGCGTGTTACGTAACGAGGTTAGTGTTAGCAACGTAAAAAAAACGTTTCAATGACGACTGTCCCGCCTATCGTCGTTC]
consensusID : consensus_1669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[GTTGCGTACGAAAACCTTGACTATACGGATTTGAGAACATACCCTGCGAGAAAATATTGGACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTGTTTCAAGGAGGGTATCAAAGCCATGCAATCGCCAGCCGCGTCTGTCATTTGCTTCTCGTGGCGTGAGATCGTGGCCACCGGAGGAAGAGTCTACAAAAATGGATACAGTTCCTTTGCTAACCCCAACCATGGAGTCAGAATTGCTAAACGAGCCCTGGATATTTCCACAGTCAAAGATCAATGTAACAAAAGAAGACGAGAAAACAGCATCCTCCACATGGGAGGAAAACTTTCAGGATTTAAGCGATTGGTGCATGGACCCGTTCCAGGGTCAATGCGATTTTCATACAGGTGAATCACCTACTTTTAAACTATCAGGTACGAAATACGAGGGTAA]
[+] EMBL BI505458 [GTTGCGTACGAAAACCTTGACTATACGGATTTGAGAACATACCCTGCGAGAAAATATTGGACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTGTTTCAAGGAGGGTATCAAAGCCATGCAATCGCCAGCCGCGTCTGTCATTTGCTTCTCGTGGCGTGAGATCGTGGCCACCGGAGGAAGAGTCTACAAAAATGGATACAGTTCCTTTGCTAACCCCAACCATGGAGTCAGAATTGCTAAACGAGCCCTGGATATTTCCACAGTCAAAGATCAATGTAACAAAAGAAGACGAGAAAACAGCATCCTCCACATGGGAGGAAAACTTTCAGGATTTAAGCGATTGGTGCATGGACCCGTTCCAGGGTCAATGCGATTTTCATACAGGTGAATCACCTACTTTTAAACTATCAGGTACGAAATACGAGGGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1669#0 -------------------ACTATACGGATTTGAGA-CATACCCTGCGAGAAAATATTGG 40
consensus_1669#1 GTTGCGTACGAAAACCTTGACTATACGGATTTGAGAACATACCCTGCGAGAAAATATTGG 60
***************** ***********************
consensus_1669#0 ACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTG 100
consensus_1669#1 ACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTG 120
************************************************************
consensus_1669#0 TTTCAAGGAGGGTGA-GTGGATATTTTCACGTTAATT---CTCGTCCTCCGCCTCGCATA 156
consensus_1669#1 TTTCAAGGAGGGTATCAAAGCCATGCAATCGCCAGCCGCGTCTGTCATTTGCTTCTCGTG 180
************* * ** ** * *** * ** ** * *
consensus_1669#0 -TACGTTACGATTCTAACCGGATTATATAATCGTAGATCGGGTTA-ATTCTAATCGTTTA 214
consensus_1669#1 GCGTGAGATCGTGGCCACCGGAGGAAGAGTCTACAAAAATGGATACAGTTCCTTTGCTAA 240
* * * ****** * * * ** ** * * * * * *
consensus_1669#0 TCGAAGTGGGAATACGCGAAATTACGCCGCAGCTAACAAACACTACGAATCGATCGGACG 274
consensus_1669#1 CCCCAACCATGG-AGTCAGAATTGCTAAACGAGCCCTGGATATTTCCA--CAGTCAAAGA 297
* * * * **** * * * * * * * * ** *
consensus_1669#0 TCCTAGCGACCGCATTCTACTATATACTGCAGTATCGTACAAAATATACTATTCCAGAAG 334
consensus_1669#1 TCAATGTAACAAAAGAAGACGAGAAA--ACAGCATCCTCCACATGGGA-------GGAAA 348
** * ** * ** * * * *** *** * ** * * ***
consensus_1669#0 GTTCCGATTCATTATATATTTCGATTGTGCCGTCGTTTTCTGCGCAAATTCGGTGTGCAT 394
consensus_1669#1 ACTTTCAGGATTTAAGCGATTGGTGCATGGACCCGTTC-CAGGGTCAATGCGATTTTCAT 407
* * *** ** * ** **** * * * *** ** * * ***
consensus_1669#0 CACAACGTTACACAGACGAATATACGGTAACGTGAGCCGGTTTGCAAAATTCAGTCACAT 454
consensus_1669#1 ACAGGTGAATCACCTACTTTTAAACTATCAGGTA---CGAAATACGAGGGTAA------- 457
* *** ** ** ** * * ** ** * * * * *
consensus_1669#0 GCGTTGATGCTGCGTGTTACGTAACGAGGTTAGTGTTAGCAACGTAAAAAAAACGTTTCA 514
consensus_1669#1 ------------------------------------------------------------
consensus_1669#0 ATGACGACTGTCCCGCCTATCGTCGTTC 542
consensus_1669#1 ----------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |