These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [ACTATACGGATTTGAGACATACCCTGCGAGAAAATATTGGACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTGTTTCAAGGAGGGTGAGTGGATATTTTCACGTTAATTCTCGTCCTCCGCCTCGCATATACGTTACGATTCTAACCGGATTATATAATCGTAGATCGGGTTAATTCTAATCGTTTATCGAAGTGGGAATACGCGAAATTACGCCGCAGCTAACAAACACTACGAATCGATCGGACGTCCTAGCGACCGCATTCTACTATATACTGCAGTATCGTACAAAATATACTATTCCAGAAGGTTCCGATTCATTATATATTTCGATTGTGCCGTCGTTTTCTGCGCAAATTCGGTGTGCATCACAACGTTACACAGACGAATATACGGTAACGTGAGCCGGTTTGCAAAATTCAGTCACATGCGTTGATGCTGCGTGTTACGTAACGAGGTTAGTGTTAGCAACGTAAAAAAAACGTTTCAATGACGACTGTCCCGCCTATCGTCGTTC] [+] EMBL BI509156 [ACTATACGGATTTGAGACATACCCTGCGAGAAAATATTGGACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTGTTTCAAGGAGGGTGAGTGGATATTTTCACGTTAATTCTCGTCCTCCGCCTCGCATATACGTTACGATTCTAACCGGATTATATAATCGTAGATCGGGTTAATTCTAATCGTTTATCGAAGTGGGAATACGCGAAATTACGCCGCAGCTAACAAACACTACGAATCGATCGGACGTCCTAGCGACCGCATTCTACTATATACTGCAGTATCGTACAAAATATACTATTCCAGAAGGTTCCGATTCATTATATATTTCGATTGTGCCGTCGTTTTCTGCGCAAATTCGGTGTGCATCACAACGTTACACAGACGAATATACGGTAACGTGAGCCGGTTTGCAAAATTCAGTCACATGCGTTGATGCTGCGTGTTACGTAACGAGGTTAGTGTTAGCAACGTAAAAAAAACGTTTCAATGACGACTGTCCCGCCTATCGTCGTTC] consensusID : consensus_1669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [GTTGCGTACGAAAACCTTGACTATACGGATTTGAGAACATACCCTGCGAGAAAATATTGGACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTGTTTCAAGGAGGGTATCAAAGCCATGCAATCGCCAGCCGCGTCTGTCATTTGCTTCTCGTGGCGTGAGATCGTGGCCACCGGAGGAAGAGTCTACAAAAATGGATACAGTTCCTTTGCTAACCCCAACCATGGAGTCAGAATTGCTAAACGAGCCCTGGATATTTCCACAGTCAAAGATCAATGTAACAAAAGAAGACGAGAAAACAGCATCCTCCACATGGGAGGAAAACTTTCAGGATTTAAGCGATTGGTGCATGGACCCGTTCCAGGGTCAATGCGATTTTCATACAGGTGAATCACCTACTTTTAAACTATCAGGTACGAAATACGAGGGTAA] [+] EMBL BI505458 [GTTGCGTACGAAAACCTTGACTATACGGATTTGAGAACATACCCTGCGAGAAAATATTGGACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTGTTTCAAGGAGGGTATCAAAGCCATGCAATCGCCAGCCGCGTCTGTCATTTGCTTCTCGTGGCGTGAGATCGTGGCCACCGGAGGAAGAGTCTACAAAAATGGATACAGTTCCTTTGCTAACCCCAACCATGGAGTCAGAATTGCTAAACGAGCCCTGGATATTTCCACAGTCAAAGATCAATGTAACAAAAGAAGACGAGAAAACAGCATCCTCCACATGGGAGGAAAACTTTCAGGATTTAAGCGATTGGTGCATGGACCCGTTCCAGGGTCAATGCGATTTTCATACAGGTGAATCACCTACTTTTAAACTATCAGGTACGAAATACGAGGGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1669#0 -------------------ACTATACGGATTTGAGA-CATACCCTGCGAGAAAATATTGG 40 consensus_1669#1 GTTGCGTACGAAAACCTTGACTATACGGATTTGAGAACATACCCTGCGAGAAAATATTGG 60 ***************** *********************** consensus_1669#0 ACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTG 100 consensus_1669#1 ACTTGCCGATATATAAAACAGTTCTCGCGTTCCAAGTGGAAGGTACAGCAACACCGATTG 120 ************************************************************ consensus_1669#0 TTTCAAGGAGGGTGA-GTGGATATTTTCACGTTAATT---CTCGTCCTCCGCCTCGCATA 156 consensus_1669#1 TTTCAAGGAGGGTATCAAAGCCATGCAATCGCCAGCCGCGTCTGTCATTTGCTTCTCGTG 180 ************* * ** ** * *** * ** ** * * consensus_1669#0 -TACGTTACGATTCTAACCGGATTATATAATCGTAGATCGGGTTA-ATTCTAATCGTTTA 214 consensus_1669#1 GCGTGAGATCGTGGCCACCGGAGGAAGAGTCTACAAAAATGGATACAGTTCCTTTGCTAA 240 * * * ****** * * * ** ** * * * * * * consensus_1669#0 TCGAAGTGGGAATACGCGAAATTACGCCGCAGCTAACAAACACTACGAATCGATCGGACG 274 consensus_1669#1 CCCCAACCATGG-AGTCAGAATTGCTAAACGAGCCCTGGATATTTCCA--CAGTCAAAGA 297 * * * * **** * * * * * * * * ** * consensus_1669#0 TCCTAGCGACCGCATTCTACTATATACTGCAGTATCGTACAAAATATACTATTCCAGAAG 334 consensus_1669#1 TCAATGTAACAAAAGAAGACGAGAAA--ACAGCATCCTCCACATGGGA-------GGAAA 348 ** * ** * ** * * * *** *** * ** * * *** consensus_1669#0 GTTCCGATTCATTATATATTTCGATTGTGCCGTCGTTTTCTGCGCAAATTCGGTGTGCAT 394 consensus_1669#1 ACTTTCAGGATTTAAGCGATTGGTGCATGGACCCGTTC-CAGGGTCAATGCGATTTTCAT 407 * * *** ** * ** **** * * * *** ** * * *** consensus_1669#0 CACAACGTTACACAGACGAATATACGGTAACGTGAGCCGGTTTGCAAAATTCAGTCACAT 454 consensus_1669#1 ACAGGTGAATCACCTACTTTTAAACTATCAGGTA---CGAAATACGAGGGTAA------- 457 * *** ** ** ** * * ** ** * * * * * consensus_1669#0 GCGTTGATGCTGCGTGTTACGTAACGAGGTTAGTGTTAGCAACGTAAAAAAAACGTTTCA 514 consensus_1669#1 ------------------------------------------------------------ consensus_1669#0 ATGACGACTGTCCCGCCTATCGTCGTTC 542 consensus_1669#1 ---------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |