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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1714 cluster # 1714       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1714#0 length = 549 sequences # 1  
consensus_1714#1 length = 494 sequences # 1  

consensusID : consensus_1714#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence
                              [ATTTGTGTTGCTACTTGTGCCCTTGATTTTCCTACACTGTCTGCTTCTAGAAAAAAAATATATATATATACTTTGCACCGATATCTTCATTAGTAATTTTCTTGCCATCTACAATTGTAAACGCTCCAATACCTGGTAAAACTAGAGATTTTAAAATTTCTGTACCAAGGCCTGTAGCATTTATTACACAAATGTGTGCTCCTTCTAATGCAGCTTGACCATGATCACCCCATAACCTCAATTGTCTATCATATTTTCTATTTCTTTCAGATTGCTCTGGCGATTTTGGTGCTGGTGATGCCATAAGGATAGACTAATAAGAATAAAATAATGATATATATATATAATATTTTACTTTGGACAATGTAAAATATTACTTTCAATCAAAATTTTATTCACAACAACGCTTACTCTTATACTTATAAACTTGCACGAATCAACACAAATGAATCATTTTTGTAATATAAAATAAATTAAAATATTTTTATCGATCAAAACTAAATAGTATCTAAAATTATATAATAAAATTAAAAATTAATAAAAATAAAA]

[+] EMBL BI505296             [ATTTGTGTTGCTACTTGTGCCCTTGATTTTCCTACACTGTCTGCTTCTAGAAAAAAAATATATATATATACTTTGCACCGATATCTTCATTAGTAATTTTCTTGCCATCTACAATTGTAAACGCTCCAATACCTGGTAAAACTAGAGATTTTAAAATTTCTGTACCAAGGCCTGTAGCATTTATTACACAAATGTGTGCTCCTTCTAATGCAGCTTGACCATGATCACCCCATAACCTCAATTGTCTATCATATTTTCTATTTCTTTCAGATTGCTCTGGCGATTTTGGTGCTGGTGATGCCATAAGGATAGACTAATAAGAATAAAATAATGATATATATATATAATATTTTACTTTGGACAATGTAAAATATTACTTTCAATCAAAATTTTATTCACAACAACGCTTACTCTTATACTTATAAACTTGCACGAATCAACACAAATGAATCATTTTTGTAATATAAAATAAATTAAAATATTTTTATCGATCAAAACTAAATAGTATCTAAAATTATATAATAAAATTAAAAATTAATAAAAATAAAA]


>consensus_1714#0 ATTTGTGTTGCTACTTGTGCCCTTGATTTTCCTACACTGTCTGCTTCTAGAAAAAAAATA TATATATATACTTTGCACCGATATCTTCATTAGTAATTTTCTTGCCATCTACAATTGTAA ACGCTCCAATACCTGGTAAAACTAGAGATTTTAAAATTTCTGTACCAAGGCCTGTAGCAT TTATTACACAAATGTGTGCTCCTTCTAATGCAGCTTGACCATGATCACCCCATAACCTCA ATTGTCTATCATATTTTCTATTTCTTTCAGATTGCTCTGGCGATTTTGGTGCTGGTGATG CCATAAGGATAGACTAATAAGAATAAAATAATGATATATATATATAATATTTTACTTTGG ACAATGTAAAATATTACTTTCAATCAAAATTTTATTCACAACAACGCTTACTCTTATACT TATAAACTTGCACGAATCAACACAAATGAATCATTTTTGTAATATAAAATAAATTAAAAT ATTTTTATCGATCAAAACTAAATAGTATCTAAAATTATATAATAAAATTAAAAATTAATA AAAATAAAA



consensusID : consensus_1714#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence
                              [AGACAGTGTAGGAAAATCAAGGGCACAAGTAGCAACACAAATGCTTTTAGAGTTAAATTCAGATGTTAGAGGTGATTATATAGACGAGGAACCTGAACAAATTTTATGTAATAGTCCAGATTTTTTTAACAATTTTACCGTTGTCGTAGCCACTTCTTTATCAGAGAAATCTTTAATTCTTCTATCACAAAGACTTTGGGAATTAAATATACCTTTAATAGTATGTAGAAGTATAGGATTTATCGCATATATGAGAATTCAAGTGAAAGAACATACGGTTATAGAAACACATCCAGATAATGAAATTCCAGATTTACGTTTGGACAAGCCATTTGAGATATTAAAAAAAACATTTTGATTCCATAAATTTAGATGAACTTAGTTTTAAAGATCATTCTCATATACCGTACTTAGTTATACTATATAAATTTCTAGAAAAATGGACTTTACATAAAAAGGATTTACCTAAAACTTATAAAGAAAAACATCAATTA]

[+] EMBL BI513433             [AGACAGTGTAGGAAAATCAAGGGCACAAGTAGCAACACAAATGCTTTTAGAGTTAAATTCAGATGTTAGAGGTGATTATATAGACGAGGAACCTGAACAAATTTTATGTAATAGTCCAGATTTTTTTAACAATTTTACCGTTGTCGTAGCCACTTCTTTATCAGAGAAATCTTTAATTCTTCTATCACAAAGACTTTGGGAATTAAATATACCTTTAATAGTATGTAGAAGTATAGGATTTATCGCATATATGAGAATTCAAGTGAAAGAACATACGGTTATAGAAACACATCCAGATAATGAAATTCCAGATTTACGTTTGGACAAGCCATTTGAGATATTAAAAAAAACATTTTGATTCCATAAATTTAGATGAACTTAGTTTTAAAGATCATTCTCATATACCGTACTTAGTTATACTATATAAATTTCTAGAAAAATGGACTTTACATAAAAAGGATTTACCTAAAACTTATAAAGAAAAACATCAATTA]


>consensus_1714#1 AGACAGTGTAGGAAAATCAAGGGCACAAGTAGCAACACAAATGCTTTTAGAGTTAAATTC AGATGTTAGAGGTGATTATATAGACGAGGAACCTGAACAAATTTTATGTAATAGTCCAGA TTTTTTTAACAATTTTACCGTTGTCGTAGCCACTTCTTTATCAGAGAAATCTTTAATTCT TCTATCACAAAGACTTTGGGAATTAAATATACCTTTAATAGTATGTAGAAGTATAGGATT TATCGCATATATGAGAATTCAAGTGAAAGAACATACGGTTATAGAAACACATCCAGATAA TGAAATTCCAGATTTACGTTTGGACAAGCCATTTGAGATATTAAAAAAAACATTTTGATT CCATAAATTTAGATGAACTTAGTTTTAAAGATCATTCTCATATACCGTACTTAGTTATAC TATATAAATTTCTAGAAAAATGGACTTTACATAAAAAGGATTTACCTAAAACTTATAAAG AAAAACATCAATTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1714#0      ATTTGTGTTGCTACTTGTGCCCTTGATTTTCCTACACTGTCTGCTTCTAGAAAAAAAATA 60
consensus_1714#1      ----------------------------------------------------AGACAGTG 8
                                                                          * * * * 

consensus_1714#0      TATATATATACTTTGCACCGATATCTTCATTAGTAATTTTCTTGCCATCTACAATTGT-- 118
consensus_1714#1      TAGGAAAATCAAGGGCACAAGTAGCAACACAAATGCTTTTAGAGTTAAATTCAGATGTTA 68
                      **   * **     ****   ** *  **  * *  ****   *  *  * **  ***  

consensus_1714#0      -AAACGCTCCAATACCTGGTAAAACTAGA-GATTTTAAAATTTCTGTACCAAGGCCTGTA 176
consensus_1714#1      GAGGTGATTATATAGACGAGGAACCTGAACAAATTTTATGTAATAGTCCAGATTTTTTTA 128
                       *   * *   ***   *   ** **  *  * *** *  *    ** *  *    * **

consensus_1714#0      GCATTTATTACACAAATGTGTGCTCCTTCTAATGCAGCTTGACCATGATCACCCCATAAC 236
consensus_1714#1      ACAATTTTACCGTTGTCGTA-GCCACTTCTTTATCAGAGAAATCTTTA--ATTCTTCTAT 185
                       ** ** *  *      **  **  *****    ***    * * * *  *  *    * 

consensus_1714#0      CTCAATTGTCTATCATATTTTCTATTTCTTTCAGATTGCTCTGGCGATTTTGGTGCTGGT 296
consensus_1714#1      CACAAAGACTTTGGGAATTAAATATACCTTTAATAGTA-TGTAGAAGTATAGGATTTATC 244
                      * ***     *     ***   ***  **** * * *  * * *   * * **   *   

consensus_1714#0      GATGCCATAAGGATAGACTAATAAGAATAAAATAATGATATATATATATAATATTTTACT 356
consensus_1714#1      GCATATATGAGAAT---TCAAGTGAAAGAACATACGGTTATAGAAACACA----TCCAGA 297
                      *     ** ** **     **    ** ** ***  * **** * * * *    *  *  

consensus_1714#0      TTGGACAATGTAAAATATTACTTTCAATCAAA--ATTTTATTCACAACAACGCTTACTCT 414
consensus_1714#1      TAATGAAATTCCAGAT-TTACGTTTGGACAAGCCATTTGAGATATTAAAAAAAACATTTT 356
                      *     ***   * ** **** **    ***   **** *   *  * **     * * *

consensus_1714#0      TATACTTATAAACTTGCACGAATCAACACAAATGAATCATTTTTGTAATATAAAATAAAT 474
consensus_1714#1      GATTCC-ATAAATTTAGATGAACTTAGTTTTAAAGATCATTCTCATATACCGTACTTAGT 415
                       ** *  ***** **  * ***   *     *   ****** *  **      * * * *

consensus_1714#0      TAAAATATTTTTATCGATCAAAACTAAATAGTATCTAAAATTATATAATAAAATTAAAAA 534
consensus_1714#1      TATACTATATAAATTTCTAGAAA---AATGGACTTTACATAAAAAGGATTTACCTAAAAC 472
                      ** * *** *  **   *  ***   *** *  * ** *   * *  **  *  ***** 

consensus_1714#0      TTAATAAAAATAAAA------- 549
consensus_1714#1      TTATAAAGAAAAACATCAATTA 494
                      ***  ** ** ** *       




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)