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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[TTTTTACCGCAAGCACATTATCGGAATGAACGATTTGCTGGTGCTAGACCAACCGTTGTAGGATGGGGTACTACTTATTATGGTGGAAAAGAAAGTACGGTACAGCGGCAAGCAGTGCTTCCAGTATGGAGAAACGAAGATTGCAACGCAGCTTATTTTCAACCAATTACCAGCAATTTTCTATGCGCTGGTTATAGTCAAGGCGGCAAAGATGCTTGTCAAGGTGATTCCGGTGGTCCACTTATGCTTNNNGCGGATGGTAAATGGATTCAGATCGGTATTGTCTCGTTTGGTAATAAATGTGGAGAACCAGGATATCCGGGAGTATATACGCGTGTGACCGAATACGTNNNCTGGATTAAAAATAATTTGAATTAAGCATGAGCAATTTTCATCCTAATTGATTTGTATTTTCGACTTCGCATCATATGATTCTTATTCGGTATCATATCATTTGTAAGTATATTGTTGTGAGTGCCANNNATCTTAATTTATACATTACCTCTTTATATTATATGCACTAGTGTAACTAGNATAATTGCACGTATATTTGTGCAATCATACAAATTTGTAAATTATATTATAATAATTNNACATACGCGTGCACACTTATATATGCAAATATACGTAATTTAATAAATTAAAAAAAAA]
[+] EMBL BI506279 [TTTTTACCGCAAGCACATTATCGGAATGAACGATTTGCTGGTGCTAGACCAACCGTTGTAGGATGGGGTACTACTTATTATGGTGGAAAAGAAAGTACGGTACAGCGGCAAGCAGTGCTTCCAGTATGGAGAAACGAAGATTGCAACGCAGCTTATTTTCAACCAATTACCAGCAATTTTCTATGCGCTGGTTATAGTCAAGGCGGCAAAGATGCTTGTCAAGGTGATTCCGGTGGTCCACTTATGCTTNNNGCGGATGGTAAATGGATTCAGATCGGTATTGTCTCGTTTGGTAATAAATGTGGAGAACCAGGATATCCGGGAGTATATACGCGTGTGACCGAATACGTNNNCTGGATTAAAAATAATTTGAATTAAGCATGAGCAATTTTCATCCTAATTGATTTGTATTTTCGACTTCGCATCATATGATTCTTATTCGGTATCATATCATTTGTAAGTATATTGTTGTGAGTGCCANNNATCTTAATTTATACATTACCTCTTTATATTATATGCACTAGTGTAACTAGNATAATTGCACGTATATTTGTGCAATCATACAAATTTGTAAATTATATTATAATAATTNNACATACGCGTGCACACTTATATATGCAAATATACGTAATTTAATAAATTAAAAAAAAA]
consensusID : consensus_1749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[ATTGTACACGCGATCACCGTCAACGGCCATTTGCTGCTAAACAATTCACTGTGCGTCTTGGAGACATAGATCTCGAAAGGAATGATGAACCATCCGCGCCGGAAACTTACACGGTTAAACAAATTCATGCACATCCAAAATTCTCTCGTGTTGGGTTTTATAATGATATTGCAGTTCTGGAGTTAACGAGGACTGTTCGAAAATCTCCTTATGTAATACCGATTTGTTTACCGCAAGCACATTATCGGAATGAACGATTTGCTGGTGCT]
[+] EMBL BI505146 [ATTGTACACGCGATCACCGTCAACGGCCATTTGCTGCTAAACAATTCACTGTGCGTCTTGGAGACATAGATCTCGAAAGGAATGATGAACCATCCGCGCCGGAAACTTACACGGTTAAACAAATTCATGCACATCCAAAATTCTCTCGTGTTGGGTTTTATAATGATATTGCAGTTCTGGAGTTAACGAGGACTGTTCGAAAATCTCCTTATGTAATACCGATTTGTTTACCGCAAGCACATTATCGGAATGAACGATTTGCTGGTGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1749#0 TTTTTACCGCAAGCACATTATCGGAATGAACGATTTGCTGGTGCTAGACCAACCGTTGTA 60
consensus_1749#1 ------------------------------------------------------------
consensus_1749#0 GGATGGGGTACTACTTATTATGGTGGAAAAGAAAGTACGGTACAGCGGCAAGCAGTGCTT 120
consensus_1749#1 ------------------------------------------------------------
consensus_1749#0 CCAGTATGGAGAAACGAAGATTGCAACGCAGCTTATTTTCAACCAATTACCAGCAATTTT 180
consensus_1749#1 ------------------------------------------------------------
consensus_1749#0 CTATGCGCTGGTTATAGTCAAGGCGGCAAAGATGCTTGTCAAGGTGATTCCGGTGGTCCA 240
consensus_1749#1 ------------------------------------------------------------
consensus_1749#0 CTTATGCTTNNNGCGGATGGTAAATGGATTCAGATCGGTATTGTCTCGTTTGGTAATAAA 300
consensus_1749#1 ------------------------------------------------------------
consensus_1749#0 TGTGGAGAACCAGGATATCCGGGAGTATATACGCGTGTGACCGAATACGTNNNCTGGATT 360
consensus_1749#1 -----------------------ATTGTACACGCG-ATCACCGTCAACGGCCATTTGCTG 36
* * ** ***** * **** *** * * *
consensus_1749#0 AAAAATAATTTGAATTAAGCATGAGCAATTTTCATCCTAATTGATTTGTATTTTCGACTT 420
consensus_1749#1 CTAAACAATTCACTGTGCGTCTTGGAGACATAGATCTCGAAAGGAATG-ATGAACCA-TC 94
*** **** * * * * * * *** * * ** ** * * *
consensus_1749#0 CGCATCATATGATTCTTATTCGGTATCATATCATTTGTAAGTATATTGTTGTGAGTGCCA 480
consensus_1749#1 CGCGCCG---GAAACTTACACGGT-------------TAAACAAATTCATGCACAT-CCA 137
*** * ** **** **** *** * *** ** * ***
consensus_1749#0 NNNATCTTAATTTATACATTACCTCTTTATATTATATGCACTAGTGT-AACTAGNATAAT 539
consensus_1749#1 AAATTCTCTCGTGTTGGGTTTTATAATGATATTGCA-GTTCTGGAGTTAACGAGGACTGT 196
*** * * ** * * ***** * * ** * ** *** ** * *
consensus_1749#0 T-GCACGTATATTTGTGCAATCATACAAATTTGTAAATTATATTATAATAATTNNACATA 598
consensus_1749#1 TCGAAAATCTCCTTATGTAAT---ACCGATTTGTTTACCGCAAGCACATTATCGGA-ATG 252
* * * * * ** ** *** ** ****** * * ** ** * **
consensus_1749#0 CGCGTGCACACTTATATATGCAAATATACGTAATTTAATAAATTAAAAAAAAA 651
consensus_1749#1 AACG-----ATTTGCTGGTGCT------------------------------- 269
** * ** ***
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |