These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 751 fasta sequence [CCAATATCAATTCTCCACCATATTTATCATCAGGATTTCTGTTTAAATAAAAACTAAAAACAGGTTGAGGTACTAATCCTTGTTTAACCATATTGTAAAATACAGGTGTTACACCATCAACAGAAATTTTAGAATAAGCCATTCCTAAGATACCATCAAATTTAGCAGCAACAAAAGCTAATCCAGGTTCACTCAAAGCTTCAGCAAAAGTCTGATCAGAAATTTTCATTCCTGCAATATCTACAGTATCAGTGGAAAGATAGCCAGAGAGACTTCCAGAGCCATAACGGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGC-AATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACACCATAATATTGAGCATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCATGAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAATTAAAAGATTAAGTTATGTATTAAAAAAAAAAAAAAATAGCACTATAGAAAAAAA] [+] EMBL BI510332 [CCAATATCAATTCTCCACCATATTTATCATCAGGATTTCTGTTTAAATAAAAACTAAAAACAGGTTGAGGTACTAATCCTTGTTTAACCATATTGTAAAATACAGGTGTTACACCATCAACAGAAATTTTAGAATAAGCCATTCCTAAGATACCATCAAATTTAGCAGCAACAAAAGCTAATCCAGGTTCACTCAAAGCTTCAGCAAAAGTCTGATCAGAAATTTTCATTCCTGCAATATCTACAGTATCAGTGGAAAGATAGCCAGAGAGACTTCCAGAGCCATAACGGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGC AATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACACCATAATATTGAGCATCTAAGTAGTTAGNAAGAGGTTCTGGCTGNNNCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTAT ] [-] EMBL BI507683 [ TCAGGATTTCTGTTTAAATAAAAACTAAAAACAGGTTGAGGTACTAATCCTTGTTTAACCATATTGTAAAATACAGGTGTTACACCATCAACAGAAATTTTAGAATAAGCCATTNNNAAGATACCATCAAATTTAGCAGCAACAAAAGCTAATCCAGGTTCACTCAAAGCTTCAGCAAAAGTCTGATCAGAAATTTTCATTCCTGCAATATCTACAGTATCAGTGGAAAGATAGCCAGAGAGACTTCCAGAGCCATAACGGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGCNNNTATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCT ] [-] EMBL BI506155 [ AAAAACAGGTTGAGGTACTAATCCTTGTTTAACCATATTGTAAAATACAGGTGTTACACCATCAACAGAAATTTTAGAATAAGCCATTCCTAAGATACCATCAAATTTAGCAGCAACAAAAGCTAATCCAGGTTCACTCAAAGCTTCAGCAAAAGTCTGATCAGAAATTTTCATTCCTGCAATATCTACAGTATCAGTGGAAAGATAGCCAGAGAGACTTCCAGAGCCATAACGGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGC AATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACACCATAATATTGAGCATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTAT ] [-] EMBL BI514733 [ TGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGC AATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACACCATAATATTGAGCATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCATGAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAATTAAAAGATTAAGTTATGTATTAAATAATATTAAATATAGCACTATAGAAAAAAA] [-] EMBL BI512932 [ GTGTTATCATATTTACGATGTAATTTGCAAGC AATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACCCCATAATATTGAGCATTTAAGTAGTTAGAAAGAGGTNNNGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCATGAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAATTAAAAGATTAAGTTATGTATTAAAAAAAAAAAAAA ] consensusID : consensus_175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [GGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGCAATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACCCCATAATATTGAGCATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCATGAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAAAAAAAAAAAAAAAGCAACGCGGCCGC] [-] EMBL BI513499 [GGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGCAATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACCCCATAATATTGAGCATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCATGAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAAAAAAAAAAAAAAAGCAACGCGGCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_175#0 CCAATATCAATTCTCCACCATATTTATCATCAGGATTTCTGTTTAAATAAAAACTAAAAA 60 consensus_175#1 ------------------------------------------------------------ consensus_175#0 CAGGTTGAGGTACTAATCCTTGTTTAACCATATTGTAAAATACAGGTGTTACACCATCAA 120 consensus_175#1 ------------------------------------------------------------ consensus_175#0 CAGAAATTTTAGAATAAGCCATTCCTAAGATACCATCAAATTTAGCAGCAACAAAAGCTA 180 consensus_175#1 ------------------------------------------------------------ consensus_175#0 ATCCAGGTTCACTCAAAGCTTCAGCAAAAGTCTGATCAGAAATTTTCATTCCTGCAATAT 240 consensus_175#1 ------------------------------------------------------------ consensus_175#0 CTACAGTATCAGTGGAAAGATAGCCAGAGAGACTTCCAGAGCCATAACGGATTGCAAAGT 300 consensus_175#1 ------------------------------------------------GGATTGCAAAGT 12 ************ consensus_175#0 CAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGC 360 consensus_175#1 CAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGC 72 ************************************************************ consensus_175#0 AAGCAATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTAT 420 consensus_175#1 AAGCAATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTAT 132 ************************************************************ consensus_175#0 CAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACACCATAATATTGAG 480 consensus_175#1 CAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACCCCATAATATTGAG 192 ********************************************** ************* consensus_175#0 CATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTT 540 consensus_175#1 CATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTT 252 ************************************************************ consensus_175#0 GATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATG 600 consensus_175#1 GATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATG 312 ************************************************************ consensus_175#0 GAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCAT 660 consensus_175#1 GAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCAT 372 ************************************************************ consensus_175#0 GAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAATTAAAAGATTAA-GTTATGTATTA 719 consensus_175#1 GAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAAAAAAAAAAAAAAAGCAACGCGGCC 432 ************************************ **** * ** * * * consensus_175#0 AAAAAAAAAAAAAATAGCACTATAGAAAAAAA 751 consensus_175#1 GC------------------------------ 434 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |