These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [GTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGTATCACTAAAACTATCCGTCGTTATGGCTGGCCAGCTGTATGTATACATGGTGACAAATCACAATTAGAAAGAGATTTTGTTCTTTCAGAATTTAGGAGGAATAAAGATTGTATTCTTGTAGCAACAGATGTTGCTGCTCGTGGATTGGATGTTGACGATGTAAAGTACGTGATCAACTTTGATTATCCAAATTCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAATAATTCAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAACTTATCGTAAAAGNNAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGATTAACTTT] [+] EMBL BI513259 [GTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGTATCACTAAAACTATCCGTCGTTATGGCTGGCCAGCTGTATGTATACATGGTGACAAATCACAATTAGAAAGAGATTTTGTTCTTTCAGAATTTAGGAGGAATAAAGATTGTATTCTTGTAGCAACAGATGTTGCTGCTCGTGGATTGGATGTTGACGATGTAAAGTACGTGATCAACTTTGATTATCCAAATTCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAATAATTCAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAACTTATCGTAAAAGNNAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGATTAACTTT] consensusID : consensus_179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 502 fasta sequence [TGTAAGAAGCACTTGTATTTTTGGTGGTGCACCAAAAGGAAGCCAAGCTCGTGATTTAGAACAAGGAGTTGAGATTTGCATTGCTACTCCTGGACGATTAATTGATTTTTTGGAACGTGGCACAACTAATTTACGTAGATGTACATATTTGGTATTGGATGAAGCAGATAGAATGTTAGATATGGGTTTTGAACCACAGATTAGAAAAATTATTGAACAAATCAGACCAGATAGACAAGTATTAATGTGGTCTGCAACTTGGCCAAAAGAAGTTCGAAACCTTGCAGAAGAATATCTTGTAGATTATACACAATTGAATATTGGATCATTAACATTATCAGCTAACCATAATATTCTTCAAATTGTTGATGTTTGTGAAGAAGATGAAAAACAAACAAAATTGCAAAATCTTCTTCAGGAAATCAGTAATGTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGTATCACTAAAACT] [+] EMBL BI507376 [TGTAAGAAGCACTTGTATTTTTGGTGGTGCACCAAAAGGAAGCCAAGCTCGTGATTTAGAACAAGGAGTTGAGATTTGCATTGCTACTCCTGGACGATTAATTGATTTTTTGGAACGTGGCACAACTAATTTACGTAGATGTACATATTTGGTATTGGATGAAGCAGATAGAATGTTAGATATGGGTTTTGAACCACAGATTAGAAAAATTATTGAACAAATCAGACCAGATAGACAAGTATTAATGTGGTCTGCAACTTGGCC ] [+] EMBL BI512808 [ TGGTGGTGCACCAAAAGGAAGCCAAGCTCGTGATTTAGAACAAGGAGTTGAGATTTGCATTGCTACTCCTGGACGATTAATTGATTTTTTGGAACGTGGCACAACTAATTTACGTAGATGTACATATTTGGTATTGGATGAAGCAGATAGAATGTTAGATATGGGTTTTGAACCACAGATTAGAAAAATTATTGAACAAATCAGACCAGATAGACAAGTATTAATGTGGTCTGCAACTTGGCCAAAAGAAGTTCGAAACCTTGCAGAAGAATATCTTGTAGATTATACACAATTGAATATTGGATCATTAACATTATCAGCTAACCATAATATTCTTCAAATTGTTGATGTTTGTGAAGAAGATGAAAAACAAACAAAATTGCAAAATCTTCTTCAGGAAATCAGTAATGTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGTATCACTAAAACT] [+] EMBL BI512741 [ TGGTGGTGCACCAAAAGGAAGCCAAGCTCGTGATTTAGAACAAGGAGTTGAGATTTGCATTGCTACTCCTGGACGATTAATTGATTTTTTGGAACGTGGCACAACTAATTTACGTAGATGTACATATTTGGTATTGGATGAAGCAGATAGAATGTTAGATATGGGTTTTGAACCACAGATTAGAAAAATTATTGAACAAATCAGACCAGATAGACAAGTATTAATGTGGTCTGCAACTTGGCCAAAAGAAGTTCGAAACCTTGCAGAAGAATATCTTGTAGATTATACACAATTGAATATTGGATCATTAACATTATCAGCTAACCATAATATTCTTCAAATTGTTGATGTTTGTGAAGAAGATGAAAAACAAACAAAATTGCAAAATCTTCTTCAGGAAA ] consensusID : consensus_179#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 484 fasta sequence [CAACAATCTATTGATTTTGCTACTATCGCTACTCTGTGATGATGCTTAGGACACGACGTGATATGAAATTGCATTTAAGAATAGCATACATCGTGGGCGCTCTGTATGCTGTCATAATATTCAACGATTAAACATGATGTTGACGATGTAAAGTACGTGATCAACTTTGATTATCCAAATTCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAATAATTCAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAACTTATCGTAAAAGAGAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGATTAACTTTACAAAATTTCTAAATGTGTAACTTA] [+] EMBL BI516729 [CAACAATCTATTGATTTTGCTACTATCGCTACTCTGTGATGATGCTTAGGACACGACGTGATATGAAATTGCATTTAAGAATAGCATACATCGTGGGCGCTCTGTATGCTGTCATAATATTCAACGATTAAACATGATGTTGACGATGTAAAGTACGTGATCAACTTTGATTATCCAAATTCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAATAATTCAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATG ] [+] EMBL BI515151 [ TTGATTTTGCTACTATCGCTACTCTGTGATGATGCTTAGGACACGACGTGATATGAAATTGCATTTAAGAATAGCATACATCGTGGGCGCTCTGTATGCTGTCATAATATTCAACGATTAAACATGATGTTGACGATGTAAAGTACGTGATCAACTTTGATTATCCAAATTCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAATAATTCAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAACTTATCGTAAAAGAGAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGATTAACTTTACAAAATTTCTAAATGTGTAACTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_179#0 GTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGT 60 consensus_179#2 ------------------------------------------------------------ consensus_179#1 -----------------------------------TGTAAGAAGCACTTGTATTTTTGGT 25 consensus_179#0 ATCACTAAAACTATCCGTCGTTATGGCTGGCCAGCTGTATGTATACATGGTGAC-AAATC 119 consensus_179#2 -------CAACAATCTATTGATTTTGCTA-CTATCGCTACTCTGTGATGATGCTTAGGAC 52 consensus_179#1 GGTGCACCAAAAGGAAGCCAAGCTCGTGATTTAGAACAAGGAGTTGAGATTTGCATTGCT 85 ** * * * * * * consensus_179#0 ACAATTAGAAAGAGATTTTGTTCTTTCAGAATTTAGGAGGAATAAA------GATTGTAT 173 consensus_179#2 ACGACGTGATATGAAATTG--CATTTAAGAA--TAGCATACATCGT------GGGCGC-T 101 consensus_179#1 ACTCCTGGACGATTAATTGA-TTTTTTGGAACGTGGCACAACTAATTTACGTAGATGTAC 144 ** ** * ** *** *** * * * * * consensus_179#0 TCTTGTAGCAACAGATGTTGCTGCTCGTGGATTGGATGTTGACGATGTAAAGTACGTGAT 233 consensus_179#2 CTGTATGCTGTCATAATATTCAACGATTAAACATGATGTTGACGATGTAAAGTACGTGAT 161 consensus_179#1 ATATTTGGTATTGGATGAAGCAGATAGAATGTTAGATATGGGTTTTGAACCACAGATTAG 204 * * * * *** * * ** * * * * consensus_179#0 CAACTTTGATTATCCAAATTCATCTGA-AGACTA-CATTCATAGAATTGGTAGAACGGGC 291 consensus_179#2 CAACTTTGATTATCCAAATTCATCTGA-AGACTA-CATTCATAGAATTGGTAGAACGGGC 219 consensus_179#1 AAAAATTATTGAACAAATCAGACCAGATAGACAAGTATTAATGTGGTCTGCAACTTGGCC 264 ** ** * * * ** * * ** **** * *** ** * * * ** * consensus_179#0 C------GTTCAAATAATT-CAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCG 344 consensus_179#2 C------GTTCAAATAATT-CAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCG 272 consensus_179#1 AAAAGAAGTTCGAAACCTTGCAGAAGAATATCTTGTAGATTATACACAATTGAATATTGG 324 **** ** ** *** * * ** * * ***** * *** * * consensus_179#0 ACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACT 404 consensus_179#2 ACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACT 332 consensus_179#1 ATCATTAACATTATCAGCTAACC--ATAATATTCTTCAAATTGTTGATGTTTGTGAAGAA 382 * * * * * *** * * * *** * ** * ** consensus_179#0 AATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAAC 464 consensus_179#2 AATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAAC 392 consensus_179#1 GATGAAA--AACAAACAAAATTGCAAAATCTTCTTCAGGAAATCAGTAATGTTA--GTCC 438 *** ** ** *** ** ** *** * *** ****** * **** * * consensus_179#0 TTATCGTAAAAGNNAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGAT 524 consensus_179#2 TTATCGTAAAAGAGAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGAT 452 consensus_179#1 AGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGTATC---AC 495 ** ** ** ** **** ***** * *** * * ** ** * consensus_179#0 TAACTTT------------------------- 531 consensus_179#2 TAACTTTACAAAATTTCTAAATGTGTAACTTA 484 consensus_179#1 TAAAACT------------------------- 502 *** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |