|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 707 fasta sequence
[GATTATTGTCATCGTTTCTGTGACTATCGATAGTTCTGTAAGTTTGGAATTTCTACCGATGATCGACAAATTGCATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCAAGACAGCCACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAATATAGCAAATTGGAAAATGAAATTGATAGTCCAAATAGACAATTTTTAGGAGATACCTTACAACAACAAAATGATATGATGAGACAACAAGATGAGCAACTAGATATGATAGGTGAAAGCATTGGAACA]
[+] EMBL BI513598 [GATTATTGTCATCGTTTCTGTGACTATCGATAGTTCTGTAAGTTTGGAATTTCTACCGATGATCGACAAATTGCATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTNNNAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGAT ]
[+] EMBL BI510371 [ TACCGATGATCGACAAATTGCATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGAAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCAAGACAGCCACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAATATAGCAAATTGGAAAATGAAATTGATAGTCCAAATAGACAATTTTTAGGAGATACCTTACAACAACAAAATGATATGATGAGACAACAAGATGAGCAACTAGATATGATAGGTGAAAGCATTGGAACA]
[+] EMBL BI510150 [ ACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCAAGACAGCCACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAATATAGCAAATTGGAAAATGAAATTGATAGTCCAAATAGACAATTTTTAGGAGATACCTTACAACAACAAAATGATATGATGA ]
[+] EMBL BI512343 [ ACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATA ]
[+] EMBL BI514234 [ TATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGNGGTCGGGATCGTGATAACACAGCAAGACAGCCACTTTTAGA ]
consensusID : consensus_180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence
[CATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTATGTATGTATGTGTATATATACGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCAAGACAGCTACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAATATAGCAAATTGGAA]
[+] EMBL BI515861 [CATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTATGTATGTATGTGTATATATACGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCAAGACAGCTACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAATATAGCAAATTGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_180#0 GATTATTGTCATCGTTTCTGTGACTATCGATAGTTCTGTAAGTTTGGAATTTCTACCGAT 60
consensus_180#1 ------------------------------------------------------------
consensus_180#0 GATCGACAAATTGCATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACC 120
consensus_180#1 -------------CATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACC 47
***********************************************
consensus_180#0 TCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAG 180
consensus_180#1 TCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAG 107
************************************************************
consensus_180#0 TTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATG 240
consensus_180#1 TTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATG 167
************************************************************
consensus_180#0 TTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGA 300
consensus_180#1 TTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGA 227
************************************************************
consensus_180#0 CTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAG 360
consensus_180#1 CTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAG 287
************************************************************
consensus_180#0 ACACAATTT----------------------GTATTGTAGAAAAAAATCCAACAAAGTTT 398
consensus_180#1 ACACAATTTATGTATGTATGTGTATATATACGTATTGTAGAAAAAAATCCAACAAAGTTT 347
********* *****************************
consensus_180#0 AAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAA 458
consensus_180#1 AAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAA 407
************************************************************
consensus_180#0 GTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCA 518
consensus_180#1 GTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCA 467
************************************************************
consensus_180#0 AGACAGCCACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAA 578
consensus_180#1 AGACAGCTACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAA 527
******* ****************************************************
consensus_180#0 TATAGCAAATTGGAAAATGAAATTGATAGTCCAAATAGACAATTTTTAGGAGATACCTTA 638
consensus_180#1 TATAGCAAATTGGAA--------------------------------------------- 542
***************
consensus_180#0 CAACAACAAAATGATATGATGAGACAACAAGATGAGCAACTAGATATGATAGGTGAAAGC 698
consensus_180#1 ------------------------------------------------------------
consensus_180#0 ATTGGAACA 707
consensus_180#1 ---------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |