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Apis mellifera
cluster # 1823 cluster # 1823       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1823#0 length = 435 sequences # 1  
 consensus_1823#1 length = 401 sequences # 1  
consensusID : consensus_1823#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence 
                              [CAACAGCAGGCGGAGGCGAGATTGGAGAACGGAAATAAGCAGAGCGACGGGGGCTATGACCCGGCCAGCAAAGTGGGCAACTTCGAGCAGAAGCCGAGCTTCGACATGTTGAAACCGGTGGACGAGGGGAAGGCCGAGTTCGGGAAGCAGAGCAAGTGCTTCTTCGACGAGAGGCCCCGCCACTTCGAGCAGGCCCAACCGCCCGAGGCGATGTTCCCAGGCGAGTTGCAGAAGGTGAAGCCCGAGGAGACCCACTCGACCGAGCGCAAGAGCTGCAATTACAACGACAGGAGCTCGTACGACGCGAAGGGGAACCCGTTGGGTAATCAAGAGCTGCTCCTGTCGGACCAGAAGAAGCTCGACTTCTCGAGGAACTTCCTCCCCGGCCTGCCGCCACGGGGCTGCGAAATGCTGCCGTCCGTGAAAGGGTTCGGC]

[+] EMBL BI513437             [CAACAGCAGGCGGAGGCGAGATTGGAGAACGGAAATAAGCAGAGCGACGGGGGCTATGACCCGGCCAGCAAAGTGGGCAACTTCGAGCAGAAGCCGAGCTTCGACATGTTGAAACCGGTGGACGAGGGGAAGGCCGAGTTCGGGAAGCAGAGCAAGTGCTTCTTCGACGAGAGGCCCCGCCACTTCGAGCAGGCCCAACCGCCCGAGGCGATGTTCCCAGGCGAGTTGCAGAAGGTGAAGCCCGAGGAGACCCACTCGACCGAGCGCAAGAGCTGCAATTACAACGACAGGAGCTCGTACGACGCGAAGGGGAACCCGTTGGGTAATCAAGAGCTGCTCCTGTCGGACCAGAAGAAGCTCGACTTCTCGAGGAACTTCCTCCCCGGCCTGCCGCCACGGGGCTGCGAAATGCTGCCGTCCGTGAAAGGGTTCGGC]




>consensus_1823#0
CAACAGCAGGCGGAGGCGAGATTGGAGAACGGAAATAAGCAGAGCGACGGGGGCTATGAC
CCGGCCAGCAAAGTGGGCAACTTCGAGCAGAAGCCGAGCTTCGACATGTTGAAACCGGTG
GACGAGGGGAAGGCCGAGTTCGGGAAGCAGAGCAAGTGCTTCTTCGACGAGAGGCCCCGC
CACTTCGAGCAGGCCCAACCGCCCGAGGCGATGTTCCCAGGCGAGTTGCAGAAGGTGAAG
CCCGAGGAGACCCACTCGACCGAGCGCAAGAGCTGCAATTACAACGACAGGAGCTCGTAC
GACGCGAAGGGGAACCCGTTGGGTAATCAAGAGCTGCTCCTGTCGGACCAGAAGAAGCTC
GACTTCTCGAGGAACTTCCTCCCCGGCCTGCCGCCACGGGGCTGCGAAATGCTGCCGTCC
GTGAAAGGGTTCGGC

consensusID : consensus_1823#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence 
                              [CCGTGATAGATCCTCGCTTCCGTGGATCGGCGAGAAGAGCCAACCCCCGGAAACCAGCAACCTGTCGCCTCGTGTACAGCGAATCATCCCCTGAAACCAAGAGCAGAAACATGACGACGACCACGGGCGATCCCTCGACGCTGAAGAGTCCAGCAAAGTGGGCAACTTCGAGCAGAAGCCGAGCTTCGACATGTTGAAACCGGTGGACGAGGGGAAGGCCGAGTTCGGGAAGCAGAGCAAGTGCTTCTTCGACGAAAGGCCCCGCCACTTCGAGCAGGCCCAACCGCCCGAGGCGATGTTCCCAGGCGAGTTGCAGAAGNNGAAGCCCGAGGAGACCCACTCGACCGAGCGCAAGAGCTGCAATTACAACGACAGGAGCCCGTACGACGCGAAGGGGAATC]

[+] EMBL BI511872             [CCGTGATAGATCCTCGCTTCCGTGGATCGGCGAGAAGAGCCAACCCCCGGAAACCAGCAACCTGTCGCCTCGTGTACAGCGAATCATCCCCTGAAACCAAGAGCAGAAACATGACGACGACCACGGGCGATCCCTCGACGCTGAAGAGTCCAGCAAAGTGGGCAACTTCGAGCAGAAGCCGAGCTTCGACATGTTGAAACCGGTGGACGAGGGGAAGGCCGAGTTCGGGAAGCAGAGCAAGTGCTTCTTCGACGAAAGGCCCCGCCACTTCGAGCAGGCCCAACCGCCCGAGGCGATGTTCCCAGGCGAGTTGCAGAAGNNGAAGCCCGAGGAGACCCACTCGACCGAGCGCAAGAGCTGCAATTACAACGACAGGAGCCCGTACGACGCGAAGGGGAATC]




>consensus_1823#1
CCGTGATAGATCCTCGCTTCCGTGGATCGGCGAGAAGAGCCAACCCCCGGAAACCAGCAA
CCTGTCGCCTCGTGTACAGCGAATCATCCCCTGAAACCAAGAGCAGAAACATGACGACGA
CCACGGGCGATCCCTCGACGCTGAAGAGTCCAGCAAAGTGGGCAACTTCGAGCAGAAGCC
GAGCTTCGACATGTTGAAACCGGTGGACGAGGGGAAGGCCGAGTTCGGGAAGCAGAGCAA
GTGCTTCTTCGACGAAAGGCCCCGCCACTTCGAGCAGGCCCAACCGCCCGAGGCGATGTT
CCCAGGCGAGTTGCAGAAGNNGAAGCCCGAGGAGACCCACTCGACCGAGCGCAAGAGCTG
CAATTACAACGACAGGAGCCCGTACGACGCGAAGGGGAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1823#0      ------------------------------------------------------------
consensus_1823#1      CCGTGATAGATCCTCGCTTCCGTGGATCGGCGAGAAGAGCCAACCCCCGGAAACCAGCAA 60
                                                                                  

consensus_1823#0      ---------------------CAACAGCAGGCGGAGGCGAGATTGGAGA-ACGGAAATAA 38
consensus_1823#1      CCTGTCGCCTCGTGTACAGCGAATCATCCCCTGAAACCAAGAGCAGAAACATGACGACGA 120
                                            * ** *    * *  * ***   ** * * *   *  *

consensus_1823#0      GCA-GAGCGA--CGGGGGCTATGACCCGGCCAGCAAAGTGGGCAACTTCGAGCAGAAGCC 95
consensus_1823#1      CCACGGGCGATCCCTCGACGCTGAAGAGTCCAGCAAAGTGGGCAACTTCGAGCAGAAGCC 180
                       ** * ****  *   * *  ***   * *******************************

consensus_1823#0      GAGCTTCGACATGTTGAAACCGGTGGACGAGGGGAAGGCCGAGTTCGGGAAGCAGAGCAA 155
consensus_1823#1      GAGCTTCGACATGTTGAAACCGGTGGACGAGGGGAAGGCCGAGTTCGGGAAGCAGAGCAA 240
                      ************************************************************

consensus_1823#0      GTGCTTCTTCGACGAGAGGCCCCGCCACTTCGAGCAGGCCCAACCGCCCGAGGCGATGTT 215
consensus_1823#1      GTGCTTCTTCGACGAAAGGCCCCGCCACTTCGAGCAGGCCCAACCGCCCGAGGCGATGTT 300
                      *************** ********************************************

consensus_1823#0      CCCAGGCGAGTTGCAGAAGGTGAAGCCCGAGGAGACCCACTCGACCGAGCGCAAGAGCTG 275
consensus_1823#1      CCCAGGCGAGTTGCAGAAGNNGAAGCCCGAGGAGACCCACTCGACCGAGCGCAAGAGCTG 360
                      *******************  ***************************************

consensus_1823#0      CAATTACAACGACAGGAGCTCGTACGACGCGAAGGGGAACCCGTTGGGTAATCAAGAGCT 335
consensus_1823#1      CAATTACAACGACAGGAGCCCGTACGACGCGAAGGGGAATC------------------- 401
                      ******************* ******************* *                   

consensus_1823#0      GCTCCTGTCGGACCAGAAGAAGCTCGACTTCTCGAGGAACTTCCTCCCCGGCCTGCCGCC 395
consensus_1823#1      ------------------------------------------------------------
                                                                                  

consensus_1823#0      ACGGGGCTGCGAAATGCTGCCGTCCGTGAAAGGGTTCGGC 435
consensus_1823#1      ----------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)