These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [ACTGATAATATAATTATTATTAAATGAACGATAATACATTTTTAATATAATAATAGTTTAATATCGCACGGTATATATACTTTTCAAATATTTTACACTTTAATCTATTTTAAAACGAGACACAAGTTTCTAATTAAATTAATAATAATTTTCAATTTAATTACATGGAAAGATATCAGAAACATGTGAGTCGTTTAATGAAAATCGATCAATTCTTATAATCGTTGAACTATCGTATCGTTATTACCGTCATAATTATTAAAAAAAATATATTGATTGATCTTAGAAAAATTATTAACACCATATGTGACATATTGAATCGCAATATCAATTATAAAATAATTAATAATTTCTTTTTAAATTAATTTTTAAAAACCAATTATACGTTAACAAAAGCAGATAATTATTATCTAAATCATCGTACACGTGATGAGTCGGTGGCGCCATCGTGACAACCGCGCGACAAAGTATCAATTTGATTCCACTCGAATATTTTTTTGAAACAAAATATAATATTNNTGTAAAATCTAATTTTTAAATCGTATAACCGTGTAAGAAAAAAGTTGTATATTATAGAGGATGTCGGATTCAACGAAATAA] [+] EMBL BI507567 [ACTGATAATATAATTATTATTAAATGAACGATAATACATTTTTAATATAATAATAGTTTAATATCGCACGGTATATATACTTTTCAAATATTTTACACTTTAATCTATTTTAAAACGAGACACAAGTTTCTAATTAAATTAATAATAATTTTCAATTTAATTACATGGAAAGATATCAGAAACATGTGAGTCGTTTAATGAAAATCGATCAATTCTTATAATCGTTGAACTATCGTATCGTTATTACCGTCATAATTATTAAAAAAAATATATTGATTGATCTTAGAAAAATTATTAACACCATATGTGACATATTGAATCGCAATATCAATTATAAAATAATTAATAATTTCTTTTTAAATTAATTTTTAAAAACCAATTATACGTTAACAAAAGCAGATAATTATTATCTAAATCATCGTACACGTGATGAGTCGGTGGCGCCATCGTGACAACCGCGCGACAAAGTATCAATTTGATTCCACTCGAATATTTTTTTGAAACAAAATATAATATTNNTGTAAAATCTAATTTTTAAATCGTATAACCGTGTAAGAAAAAAGTTGTATATTATAGAGGATGTCGGATTCAACGAAATAA] consensusID : consensus_1836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [GAAAAAAGTTGTATATTATAGAGGATGTCGGATTCAACGAAATAAATCAATTATCGTATTGTAAGGCGAATTTCGTTCAAGTTTGAAAGGTTCGACAAGTGGCGCCATCATGGCCGCCACTTTACGGAGCATTCACTTGATCGTCTTCCGTCCTTCTAGGAGGATCTTACACCGTATGTGCCTGATACGACGGGGCTTATTGTGTGTGTGCCTTGTCGGTGGCTTCAAGATGGCCTGTAGGCTGGTTCTACGCGCCATGGTGTGATCATTTGATTCCCGGTGGTTGTGTCTCTGTAAACGTTTCGTGAAGAATTCGTCAGTGTCAAAACGACGACGTGACTCGACCGGCTGGTAACTCGGGGCAACCTGAAAATGTGACAATCGACTGAAAACCGGTAAGTCGTCACACACATGATATTATTTTCTACTTTGTGATAACTGAATGATCAATTATAATTTCGTTACAACAAGTTTAACAATATAGTCGTTTCTAAAAAAAA] [+] EMBL BI504864 [GAAAAAAGTTGTATATTATAGAGGATGTCGGATTCAACGAAATAAATCAATTATCGTATTGTAAGGCGAATTTCGTTCAAGTTTGAAAGGTTCGACAAGTGGCGCCATCATGGCCGCCACTTTACGGAGCATTCACTTGATCGTCTTCCGTCCTTCTAGGAGGATCTTACACCGTATGTGCCTGATACGACGGGGCTTATTGTGTGTGTGCCTTGTCGGTGGCTTCAAGATGGCCTGTAGGCTGGTTCTACGCGCCATGGTGTGATCATTTGATTCCCGGTGGTTGTGTCTCTGTAAACGTTTCGTGAAGAATTCGTCAGTGTCAAAACGACGACGTGACTCGACCGGCTGGTAACTCGGGGCAACCTGAAAATGTGACAATCGACTGAAAACCGGTAAGTCGTCACACACATGATATTATTTTCTACTTTGTGATAACTGAATGATCAATTATAATTTCGTTACAACAAGTTTAACAATATAGTCGTTTCTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1836#0 ACTGATAATATAATTATTATTAAATGAACGATAATACATTTTTAATATAATAATAGTTTA 60 consensus_1836#1 ------------------------------------------------------------ consensus_1836#0 ATATCGCACGGTATATATACTTTTCAAATATTTTACACTTTAATCTATTTTAAAACGAGA 120 consensus_1836#1 ---------------GAAAAAAGTTGTATATTATAGAGGATGTCGGATTCAACGAAATAA 45 * * * ***** ** * * *** * * * consensus_1836#0 CACAAGTTTCTAATTAAATTAATAATAATTTTCAA-TTTAATTACATGGAAAGATATCAG 179 consensus_1836#1 ATCAATTATCGTATTGTAAGGCGAATTTCGTTCAAGTTTGAAAGGTTCGACAAGTGGCGC 105 *** * ** *** * *** ***** *** * * ** * * * consensus_1836#0 AAACATGTGAGTCGTTTAATGAA--AATCGATCAATTCTTATAATCGTTGAACTATCGTA 237 consensus_1836#1 CATCATGGCCGCCACTTTACGGAGCATTCACTTGATCGTCTT--CCGTCCTTCTAGGAGG 163 * **** * * ** * * * * ** * ** * * *** *** consensus_1836#0 TCGTTATTACCGTCATAATTATTAAAAAAAATATATTGATTGATCTTAGAAAAATTATTA 297 consensus_1836#1 ATCTTAC-ACCGT-ATGTGCCTGATACGACGGGGCTTATTGTGTGTGTGCCTTGTCGGTG 221 *** ***** ** * * * * ** * * * * * * consensus_1836#0 ACACCATATGTGACATATTGAATCGCAATATCAATTATAAAATAATTAATAATTTCTTTT 357 consensus_1836#1 GCTTCA-AGATGGCCTGTAGGCTGGTTCTACGCGCCATGGTGTGATCATTTGATTCCCGG 280 * ** * ** * * * * * * ** ** * ** * * *** consensus_1836#0 TAAATTAATTTTTAAAAACCAATTATACGTTAACAAAAGCAGATAATTATTATCTAAATC 417 consensus_1836#1 TGGTTGTGTCTCTGTAAACGTTTCGT----------GAAGAATTCGTCAGTGTCAAAACG 330 * * * * * **** * * * * * * * * ** *** consensus_1836#0 ATCGTAC-ACGTGATGAGTCGGTGGCGCCATCGTGACAACCGCGCGACAAAGTATCAATT 476 consensus_1836#1 ACGACGTGACTCGACCGGCTGGTAAC----TCGGGGCAACC---TGAAAATGTGACAATC 383 * ** ** * *** * *** * ***** ** ** ** **** consensus_1836#0 TGATTCCACTCGAATATTTTTTTGAAACAAAATATAATATTNN----TGTAAAATCTAAT 532 consensus_1836#1 GACTGAAAACCGGTAAGTCGTCACACACATGATATTATTTTCTACTTTGTGATAACTGAA 443 * * ** * * * * *** **** ** ** *** * * ** * consensus_1836#0 TTTTAAATCGTATAACCGTGTAAGAAAAAAGTTGTATATTATAGAGGATGTCGGATTCAA 592 consensus_1836#1 TGATCAAT--TATAATTTCGTTACAACAA-GTTTAACAATATAGTCGTTTCTAAAAAAAA 500 * * *** ***** ** * ** ** *** * * ***** * * * ** consensus_1836#0 CGAAATAA 600 consensus_1836#1 -------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |