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Apis mellifera
cluster # 184 cluster # 184       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_184#0 length = 606 sequences # 1  
consensus_184#1 length = 523 sequences # 2  
consensus_184#2 length = 511 sequences # 2  
consensus_184#3 length = 400 sequences # 1  

consensusID : consensus_184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence
                              [CGATGACCTGATCTTTCGAAAGTTCGAGAGAGTAATTATTTAGACACGAGATTTTTAATTTCAAGATTTTTCAAAATATATTTTATATTTTTTTATTATATTATGTAATTAATATCGATATTAAAATTCTAAATGTAAAATTGTTATCTTATCGAAGGTAAAAATTTTGTCAGATCATCGAGAAACTCTCCACGTGTAATTTATTTCTATCTCTCTCTGTATATCCTTATATATACGTATATACATATAAATATTCTTTCTAATCGTAAGCCACCAGCAGCAAGAAGCACTTAAGTGAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATG]

[+] EMBL BI509343             [CGATGACCTGATCTTTCGAAAGTTCGAGAGAGTAATTATTTAGACACGAGATTTTTAATTTCAAGATTTTTCAAAATATATTTTATATTTTTTTATTATATTATGTAATTAATATCGATATTAAAATTCTAAATGTAAAATTGTTATCTTATCGAAGGTAAAAATTTTGTCAGATCATCGAGAAACTCTCCACGTGTAATTTATTTCTATCTCTCTCTGTATATCCTTATATATACGTATATACATATAAATATTCTTTCTAATCGTAAGCCACCAGCAGCAAGAAGCACTTAAGTGAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATG]


>consensus_184#0 CGATGACCTGATCTTTCGAAAGTTCGAGAGAGTAATTATTTAGACACGAGATTTTTAATT TCAAGATTTTTCAAAATATATTTTATATTTTTTTATTATATTATGTAATTAATATCGATA TTAAAATTCTAAATGTAAAATTGTTATCTTATCGAAGGTAAAAATTTTGTCAGATCATCG AGAAACTCTCCACGTGTAATTTATTTCTATCTCTCTCTGTATATCCTTATATATACGTAT ATACATATAAATATTCTTTCTAATCGTAAGCCACCAGCAGCAAGAAGCACTTAAGTGAAA GCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGC TCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTC GTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAAC TATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACA ATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCA AAGATG



consensusID : consensus_184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 523
fasta sequence
                              [GTTCCTCTCCAACTTCTTTTCGTTTCATTTTCGGTAAATTGTGAATAATGGACATAATCGACCGGAATGTATATCCACCGGATCACAAAACGGTGATCAAACTTCGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATGGCGTGCTCACCGTCGAGGCTCCGCTTCCGGCGATTGGCACAGGCGAGAAGCTCATCCCAATTGCGCATCAGTAGATCGCCCAATCGACCAGTCGAACACACGAAAAAAACGA]

[-] EMBL BI508889             [GTTCCTCTCCAACTTCTTTTCGTTTCATTTTCGGTAAATTGTGAATAATGGACATAATCGACCGGAATGTATATCCACCGGATCACAAAACGGTGATCAAACTTCGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATGGCGTGCTCACCGTCGAGGCTCCGCTTCCGGCGATTGGCACAGGCGAGAAGCTCATCCCAATTGCGCATCAGTAGATCGCCCAATCGACCAGTCGAACACACGAAAAAAACGA]
[-] EMBL BI507323             [                                             TAATGGACATAATCGACCGGAATGTATATCCACCGGATCACAAAACGGTGATCAAACTTCGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATGGCGTGCTCACCGTCGAGGCTCCGCTTCCGGCGATTGGCACAGGCGAGAAGCTCATCCCAATTGCGCATCAGTAGATCGCCCAATCGACCAGTCGAACACACGAAAAAAACGA]


>consensus_184#1 GTTCCTCTCCAACTTCTTTTCGTTTCATTTTCGGTAAATTGTGAATAATGGACATAATCG ACCGGAATGTATATCCACCGGATCACAAAACGGTGATCAAACTTCGCACCACAACGCAGA GCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACA GCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCC AGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAA AACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGC TGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATGGCGTGCTCA CCGTCGAGGCTCCGCTTCCGGCGATTGGCACAGGCGAGAAGCTCATCCCAATTGCGCATC AGTAGATCGCCCAATCGACCAGTCGAACACACGAAAAAAACGA



consensusID : consensus_184#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 511
fasta sequence
                              [TGACTTATAGAAAAATCATGGCTGACAGTGGTATCAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACGCCGAGATGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACTACCAGCACCACAACGCNNNNCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGNNAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATGG]

[+] EMBL BI508581             [TGACTTATAGAAAAATCATGGCTGACAGTGGTATCAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACGCCCAGATGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACTACCAGCACCACAACGCNNNNCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGNNAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTA                                                                     ]
[+] EMBL BI506575             [                                        TAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACGCCGAGATGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACTACCAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATGG]


>consensus_184#2 TGACTTATAGAAAAATCATGGCTGACAGTGGTATCAAGCGTAATATTCCTATCAAGCTCG GTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACGCCGAGA TGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCGAAAGCA ACAACTTCTTTAAGAGTACTACCAGCACCACAACGCNNNNCACTCAAAACAGTTCTCTCA GCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAG GGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCG TTGTCAAGACCGTGGACAACAAACTATTGGTCCATGNNAAACACGAAGAGAAGACAGAGA GTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCG AAAGTATCAAGTCTTCGTTGAGCAAAGATGG



consensusID : consensus_184#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence
                              [CAAGTGTGACTTATAGAAAAATCATGGCTGACAGTGGTATCAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACGCCGAGATGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACTACCAGTCGACATCACACGAGCACCAGCGAACACCGTACCTCGACGACCTCGAAGAGCGAAGGTTGGGACAAGGTCGATCCTGCAGCACCGCCAACGCGGTCCGCGTTCGACAGCTTCAAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAA]

[+] EMBL BI510715             [CAAGTGTGACTTATAGAAAAATCATGGCTGACAGTGGTATCAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACGCCGAGATGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACTACCAGTCGACATCACACGAGCACCAGCGAACACCGTACCTCGACGACCTCGAAGAGCGAAGGTTGGGACAAGGTCGATCCTGCAGCACCGCCAACGCGGTCCGCGTTCGACAGCTTCAAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAA]


>consensus_184#3 CAAGTGTGACTTATAGAAAAATCATGGCTGACAGTGGTATCAAGCGTAATATTCCTATCA AGCTCGGTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACG CCGAGATGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCG AAAGCAACAACTTCTTTAAGAGTACTACCAGTCGACATCACACGAGCACCAGCGAACACC GTACCTCGACGACCTCGAAGAGCGAAGGTTGGGACAAGGTCGATCCTGCAGCACCGCCAA CGCGGTCCGCGTTCGACAGCTTCAAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTC TCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_184#0      CGATGACCTGATCTTTCGAAAGTTCGAGAGAGTAATTATTTAGACACGAGATTTTTAATT 60
consensus_184#1      ------------------------------------------------------------
consensus_184#2      ------------------------------------------------------------
consensus_184#3      ------------------------------------------------------------
                                                                                 

consensus_184#0      TCAAGATTTTTCAAAATATATTTTATATTTTTTTATTATATTATGTAATTAATATCGATA 120
consensus_184#1      ------------------------------------------------------------
consensus_184#2      ---------------------------------TGACTTATAGAAAAATCATGGCTGACA 27
consensus_184#3      ------------------------------------------------------------
                                                                                 

consensus_184#0      TTAAAATTCTAAATGTAAAATTGTTATCTTATCGAAGGTAAAAATTTTGTCAGATCATCG 180
consensus_184#1      ------------------------------------------------------------
consensus_184#2      GTGGTAT--CAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGA-CACCG 84
consensus_184#3      ------------------------------------------------------------
                                                                                 

consensus_184#0      AGAAACTCTCCACGTGTAATTTATTTCT-ATCTCTCTCTGTATATCCTTATATATAC-GT 238
consensus_184#1      -----------------GTTCCTCTCCA-ACTTCTTTTCGTTTCATTTTCGGTAAATTGT 42
consensus_184#2      AATTTTCCAACATACGGGAACGCTTCGACGCCGAGATGAGAAAGATGGAGGACGAGATGT 144
consensus_184#3      ------------------------CAAGTGTGACTTATAGAAAAATCATGGCTGACAGTG 36
                                                            *                    

consensus_184#0      ATATACATATAAATATTCTTTCTAATCGTA-AGCCACCAG--CAGCAAGAAGCACTTAAG 295
consensus_184#1      GAATA-ATGGACATAATCGACCGGAATGTATATCCACCGGATCACAAAACGGTGATCAAA 101
consensus_184#2      CACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACT---- 200
consensus_184#3      GTATCAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTT 96
                                             *         *  *                      

consensus_184#0      TGAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGC 355
consensus_184#1      CTTC-GCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGC 160
consensus_184#2      -ACCAGCACCACAACGCNNNNCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGC 259
consensus_184#3      CCAACATACGGGAACGCTTCGACGCCGAGA--------TGAGAAAGATGGAGGACGAGAT 148
                            **   *****        * * *        * **        * ***  *  

consensus_184#0      GTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAA 415
consensus_184#1      GTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAA 220
consensus_184#2      GTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAA 319
consensus_184#3      GTCAC------GATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAG 202
                     **  *      * ** *  ***    * **  *   **** *  *** *   *    ** 

consensus_184#0      -ACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGT-TGTCAA-GACCGTGGA 472
consensus_184#1      -ACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGT-TGTCAA-GACCGTGGA 277
consensus_184#2      -ACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGT-TGTCAA-GACCGTGGA 376
consensus_184#3      TACTACCAGTCGACATCACACGA---GCACCAGCGAACACCGTACCTCGACGACCTCGAA 259
                      *** *   ***** ** * *      * ** * * * * ***   ** * ****  * *

consensus_184#0      CAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAG 532
consensus_184#1      CAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAG 337
consensus_184#2      CAACAAACTATTGGTCCATGNNAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAG 436
consensus_184#3      GAGCGAAGGTTGGGACAAGGTCGATCCTGCAGCACCGCCAACGCG---GTCCGCGTTCGA 316
                      * * **   * ** * * *   * *  * **    * **  * *    ** * ** *  

consensus_184#0      AGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTC 592
consensus_184#1      AGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTC 397
consensus_184#2      AGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTC 496
consensus_184#3      CAGCTTCAAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGA 376
                         * ***  **        ** *  **    ** ** * *    **   *        

consensus_184#0      GTTGAGCAAAGATG---------------------------------------------- 606
consensus_184#1      GTTGAGCAAAGATGGCGTGCTCACCGTCGAGGCTCCGCTTCCGGCGATTGGCACAGGCGA 457
consensus_184#2      GTTGAGCAAAGATGG--------------------------------------------- 511
consensus_184#3      CTCGGCGTGGCTCGACGGGTTGAA------------------------------------ 400
                      * *         *                                              

consensus_184#0      ------------------------------------------------------------
consensus_184#1      GAAGCTCATCCCAATTGCGCATCAGTAGATCGCCCAATCGACCAGTCGAACACACGAAAA 517
consensus_184#2      ------------------------------------------------------------
consensus_184#3      ------------------------------------------------------------
                                                                                 

consensus_184#0      ------
consensus_184#1      AAACGA 523
consensus_184#2      ------
consensus_184#3      ------
                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)