These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [CGATGACCTGATCTTTCGAAAGTTCGAGAGAGTAATTATTTAGACACGAGATTTTTAATTTCAAGATTTTTCAAAATATATTTTATATTTTTTTATTATATTATGTAATTAATATCGATATTAAAATTCTAAATGTAAAATTGTTATCTTATCGAAGGTAAAAATTTTGTCAGATCATCGAGAAACTCTCCACGTGTAATTTATTTCTATCTCTCTCTGTATATCCTTATATATACGTATATACATATAAATATTCTTTCTAATCGTAAGCCACCAGCAGCAAGAAGCACTTAAGTGAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATG] [+] EMBL BI509343 [CGATGACCTGATCTTTCGAAAGTTCGAGAGAGTAATTATTTAGACACGAGATTTTTAATTTCAAGATTTTTCAAAATATATTTTATATTTTTTTATTATATTATGTAATTAATATCGATATTAAAATTCTAAATGTAAAATTGTTATCTTATCGAAGGTAAAAATTTTGTCAGATCATCGAGAAACTCTCCACGTGTAATTTATTTCTATCTCTCTCTGTATATCCTTATATATACGTATATACATATAAATATTCTTTCTAATCGTAAGCCACCAGCAGCAAGAAGCACTTAAGTGAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATG] consensusID : consensus_184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 523 fasta sequence [GTTCCTCTCCAACTTCTTTTCGTTTCATTTTCGGTAAATTGTGAATAATGGACATAATCGACCGGAATGTATATCCACCGGATCACAAAACGGTGATCAAACTTCGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATGGCGTGCTCACCGTCGAGGCTCCGCTTCCGGCGATTGGCACAGGCGAGAAGCTCATCCCAATTGCGCATCAGTAGATCGCCCAATCGACCAGTCGAACACACGAAAAAAACGA] [-] EMBL BI508889 [GTTCCTCTCCAACTTCTTTTCGTTTCATTTTCGGTAAATTGTGAATAATGGACATAATCGACCGGAATGTATATCCACCGGATCACAAAACGGTGATCAAACTTCGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATGGCGTGCTCACCGTCGAGGCTCCGCTTCCGGCGATTGGCACAGGCGAGAAGCTCATCCCAATTGCGCATCAGTAGATCGCCCAATCGACCAGTCGAACACACGAAAAAAACGA] [-] EMBL BI507323 [ TAATGGACATAATCGACCGGAATGTATATCCACCGGATCACAAAACGGTGATCAAACTTCGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATGGCGTGCTCACCGTCGAGGCTCCGCTTCCGGCGATTGGCACAGGCGAGAAGCTCATCCCAATTGCGCATCAGTAGATCGCCCAATCGACCAGTCGAACACACGAAAAAAACGA] consensusID : consensus_184#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 511 fasta sequence [TGACTTATAGAAAAATCATGGCTGACAGTGGTATCAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACGCCGAGATGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACTACCAGCACCACAACGCNNNNCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGNNAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATGG] [+] EMBL BI508581 [TGACTTATAGAAAAATCATGGCTGACAGTGGTATCAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACGCCCAGATGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACTACCAGCACCACAACGCNNNNCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGNNAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTA ] [+] EMBL BI506575 [ TAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACGCCGAGATGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACTACCAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAAACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGTTGTCAAGACCGTGGACAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAGAGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTCGTTGAGCAAAGATGG] consensusID : consensus_184#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [CAAGTGTGACTTATAGAAAAATCATGGCTGACAGTGGTATCAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACGCCGAGATGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACTACCAGTCGACATCACACGAGCACCAGCGAACACCGTACCTCGACGACCTCGAAGAGCGAAGGTTGGGACAAGGTCGATCCTGCAGCACCGCCAACGCGGTCCGCGTTCGACAGCTTCAAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAA] [+] EMBL BI510715 [CAAGTGTGACTTATAGAAAAATCATGGCTGACAGTGGTATCAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTTCCAACATACGGGAACGCTTCGACGCCGAGATGAGAAAGATGGAGGACGAGATGTCACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACTACCAGTCGACATCACACGAGCACCAGCGAACACCGTACCTCGACGACCTCGAAGAGCGAAGGTTGGGACAAGGTCGATCCTGCAGCACCGCCAACGCGGTCCGCGTTCGACAGCTTCAAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGCGTGGCTCGACGGGTTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_184#0 CGATGACCTGATCTTTCGAAAGTTCGAGAGAGTAATTATTTAGACACGAGATTTTTAATT 60 consensus_184#1 ------------------------------------------------------------ consensus_184#2 ------------------------------------------------------------ consensus_184#3 ------------------------------------------------------------ consensus_184#0 TCAAGATTTTTCAAAATATATTTTATATTTTTTTATTATATTATGTAATTAATATCGATA 120 consensus_184#1 ------------------------------------------------------------ consensus_184#2 ---------------------------------TGACTTATAGAAAAATCATGGCTGACA 27 consensus_184#3 ------------------------------------------------------------ consensus_184#0 TTAAAATTCTAAATGTAAAATTGTTATCTTATCGAAGGTAAAAATTTTGTCAGATCATCG 180 consensus_184#1 ------------------------------------------------------------ consensus_184#2 GTGGTAT--CAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGA-CACCG 84 consensus_184#3 ------------------------------------------------------------ consensus_184#0 AGAAACTCTCCACGTGTAATTTATTTCT-ATCTCTCTCTGTATATCCTTATATATAC-GT 238 consensus_184#1 -----------------GTTCCTCTCCA-ACTTCTTTTCGTTTCATTTTCGGTAAATTGT 42 consensus_184#2 AATTTTCCAACATACGGGAACGCTTCGACGCCGAGATGAGAAAGATGGAGGACGAGATGT 144 consensus_184#3 ------------------------CAAGTGTGACTTATAGAAAAATCATGGCTGACAGTG 36 * consensus_184#0 ATATACATATAAATATTCTTTCTAATCGTA-AGCCACCAG--CAGCAAGAAGCACTTAAG 295 consensus_184#1 GAATA-ATGGACATAATCGACCGGAATGTATATCCACCGGATCACAAAACGGTGATCAAA 101 consensus_184#2 CACGATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAGTACT---- 200 consensus_184#3 GTATCAAGCGTAATATTCCTATCAAGCTCGGTGACTTCAGCGTAATAGACACCGAATTTT 96 * * * consensus_184#0 TGAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGC 355 consensus_184#1 CTTC-GCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGC 160 consensus_184#2 -ACCAGCACCACAACGCNNNNCACTCAAAACAGTTCTCTCAGCCCCCCACACGACTCGGC 259 consensus_184#3 CCAACATACGGGAACGCTTCGACGCCGAGA--------TGAGAAAGATGGAGGACGAGAT 148 ** ***** * * * * ** * *** * consensus_184#0 GTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAA 415 consensus_184#1 GTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAA 220 consensus_184#2 GTGGCTCGACGGGTTGAACAGCCCGCTCATTCAGGACGAAGGGGACAGCAAATGCCTGAA 319 consensus_184#3 GTCAC------GATTCAGAAGCGAATTGATGAATCGCGAAAGCAACAACTTCTTTAAGAG 202 ** * * ** * *** * ** * **** * *** * * ** consensus_184#0 -ACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGT-TGTCAA-GACCGTGGA 472 consensus_184#1 -ACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGT-TGTCAA-GACCGTGGA 277 consensus_184#2 -ACTTCGTTTCGACGTCTCCCAGTACACGCCTGAGGAGATCGT-TGTCAA-GACCGTGGA 376 consensus_184#3 TACTACCAGTCGACATCACACGA---GCACCAGCGAACACCGTACCTCGACGACCTCGAA 259 *** * ***** ** * * * ** * * * * *** ** * **** * * consensus_184#0 CAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAG 532 consensus_184#1 CAACAAACTATTGGTCCATGCAAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAG 337 consensus_184#2 CAACAAACTATTGGTCCATGNNAAACACGAAGAGAAGACAGAGAGTAAATCGGTGTACAG 436 consensus_184#3 GAGCGAAGGTTGGGACAAGGTCGATCCTGCAGCACCGCCAACGCG---GTCCGCGTTCGA 316 * * ** * ** * * * * * * ** * ** * * ** * ** * consensus_184#0 AGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTC 592 consensus_184#1 AGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTC 397 consensus_184#2 AGAGTACAATCGCGAATTCCTGCTGCCCAAGGGAACCAATCCCGAAAGTATCAAGTCTTC 496 consensus_184#3 CAGCTTCAAAAGCACCACAACGCAGAGCACTCAAAACAGTTCTCTCAGCCCCCCACACGA 376 * *** ** ** * ** ** ** * * ** * consensus_184#0 GTTGAGCAAAGATG---------------------------------------------- 606 consensus_184#1 GTTGAGCAAAGATGGCGTGCTCACCGTCGAGGCTCCGCTTCCGGCGATTGGCACAGGCGA 457 consensus_184#2 GTTGAGCAAAGATGG--------------------------------------------- 511 consensus_184#3 CTCGGCGTGGCTCGACGGGTTGAA------------------------------------ 400 * * * consensus_184#0 ------------------------------------------------------------ consensus_184#1 GAAGCTCATCCCAATTGCGCATCAGTAGATCGCCCAATCGACCAGTCGAACACACGAAAA 517 consensus_184#2 ------------------------------------------------------------ consensus_184#3 ------------------------------------------------------------ consensus_184#0 ------ consensus_184#1 AAACGA 523 consensus_184#2 ------ consensus_184#3 ------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |