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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[CGTTTACGTGGGCGCCCTCGCTGCTTTCGCTATGTTCTTCACCCTGCTAGAGGGACACTATACCACTGAGCAACAGAACATGTGTCAAATAATGGCCAGCCAGCAGAACTCTTTCCTATACACGGTTTCAAGATTAGTGTCTTCTCGAGACATTCGTCGACGAGGATCAGAGGAGGAGGGAGGTAGACTGCTTCATGTGACCGATCCTGACCCTACCGTGAAACCAAAACACATTCCAAAGCCTCCAATACTTGAGACGCTCTTCTACATTCATCTGATCGCCTTGTTCGCCATTCTGTCAATGTGTTGGATTGATACGTTACCAGGAATAGGCAGGGGATTGTCTCCAGTAGAGCTATACCATACCGTAGAGCATGGATTCACGTGCCATTTCAACAACAGCGAAGCTTGTTCGAATATTTCTACCCACGGTTGGATCTTCTTGATCGCTTACATAGTATTCTCGATTTCCGCGCTCAACTTTCTTTCAATGTGTGAGA]
[+] EMBL BI506988 [CGTTTACGTGGGCGCCCTCGCTGCTTTCGCTATGTTCTTCACCCTGCTAGAGGGACACTATACCACTGAGCAACAGAACATGTGTCAAATAATGGCCAGCCAGCAGAACTCTTTCCTATACACGGTTTCAAGATTAGTGTCTTCTCGAGACATTCGTCGACGAGGATCAGAGGAGGAGGGAGGTAGACTGCTTCATGTGACCGATCCTGACCCTACCGTGAAACCAAAACACATTCCAAAGCCTCCAATACTTGAGACGCTCTTCTACATTCATCTGATCGCCTTGTTCGCCATTCTGTCAATGTGTTGGATTGATACGTTACCAGGAATAGGCAGGGGATTGTCTCCAGTAGAGCTATACCATACCGTAGAGCATGGATTCACGTGCCATTTCAACAACAGCGAAGCTTGTTCGAATATTTCTACCCACGGTTGGATCTTCTTGATCGCTTACATAGTATTCTCGATTTCCGCGCTCAACTTTCTTTCAATGTGTGAGA]
consensusID : consensus_1847#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence
[TTCTCTGCCTTCATCCTGGGCATTGTGTGCTTCATCTGGGGAAGAATATATCCACCACCGGCTCTGATACCAAACAGCTTGCGAATCAAAATACCCCGTTGCGCCCTTCTAAAAATTAGCCTGATCTACGCGTTCTCTGGTATAGTGATCACCCTTTCCATGGACCGGGACAGAGTTCTCTGCCACCTACAGGATCCCATAAAGGGCATCACGTTGGTCTTCTCCCTTGTCTATTACTTCTTCTTCTGTCGCAAAATGATGAGCTTGCAGAGGATCTTTTCAAGCACCACGATAATAGTGGGTCTTTTCATAAGCGTGGATTATGGCCTCTGCGATGAATTTCGATGCAGGGGGCGGGAGGTTTCAGCGCACGTCACAACTGTAAAGGGAAGTTGGGGTGTGAAAGCCATTTGGACGTTCGTTTACGTGGGCGCCCTCGCTGCTTTCGCTATGTTCTTCACCCTGCTAGAGGGACACTATACCACTGAGCAACAGAAC]
[+] EMBL BI504841 [TTCTCTGCCTTCATCCTGGGCATTGTGTGCTTCATCTGGGGAAGAATATATCCACCACCGGCTCTGATACCAAACAGCTTGCGAATCAAAATACCCCGTTGCGCCCTTCTAAAAATTAGCCTGATCTACGCGTTCTCTGGTATAGTGATCACCCTTTCCATGGACCGGGACAGAGTTCTCTGCCACCTACAGGATCCCATAAAGGGCATCACGTTGGTCTTCTCCCTTGTCTATTACTTCTTCTTCTGTCGCAAAATGATGAGCTTGCAGAGGATCTTTTCAAGCACCACGATAATAGTGGGTCTTTTCATAAGCGTGGATTATGGCCTCTGCGATGAATTTCGATGCAGGGGGCGGGAGGTTTCAGCGCACGTCACAACTGTAAAGGGAAGTTGGGGTGTGAAAGCCATTTGGACGTTCGTTTACGTGGGCGCCCTCGCTGCTTTCGCTATGTTCTTCACCCTGCTAGAGGGACACTATACCACTGAGCAACAGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1847#0 CGTTTACGTGGGCGCCCTCGCTGCTTTCGCTATGTTCTTCACCCTGCTAGAGGGACACTA 60
consensus_1847#1 -------TTCTCTGCCTTCATCCTGGGCATTGTGTGCTTCATCT-----GGGGAAGAATA 48
* *** ** * * *** ***** * * ** * * **
consensus_1847#0 TACCACTGAGCAACAGAACATGTGTCAAATAATGGCCAGCCAGCAGAACTCTTTCCTATA 120
consensus_1847#1 TATCC---ACCACCGGCTCTGATACCAAACAGCTTGCGA--ATCAAAATACCCCGTTGCG 103
** * * ** * * * * **** * * * ** ** * *
consensus_1847#0 CACGGTTTCAAGATTAGTGTCTTCTCGAGACATTCGTCGACGAGGATCAGAG-----GAG 175
consensus_1847#1 CCCT-TCTAAAAATTAGCCTGATCTACGCGTTCTCTGGTATAGTGATCACCCTTTCCATG 162
* * * * ** ***** * *** ** * ***** *
consensus_1847#0 GAGGGAGGTAGACTGCTTCATGTGACCGATCCTGACCCTACCGTGAAACCAAAACACATT 235
consensus_1847#1 GACCGGGACAGA--GTTCTCTGCCACCTA-CAGGATCCCAT----AAAGGGCATCACGTT 215
** * * *** * * ** *** * * ** ** * *** * *** **
consensus_1847#0 CCAAAGCCTCCAATACTTGAGACGC--TCTTCTACATTCATCTGATCGCCTTGTTCGCCA 293
consensus_1847#1 G-GTCTTCTCCCTTGTCTATTACTTCTTCTTCTGTCGCAAAATGATGAGCTTGCAGAGGA 274
**** * * ** ****** * **** **** *
consensus_1847#0 TTCTGTCAATGTGTTGGATTGATA-CGTTACCAGGAATAGGCAGGGGAT-TGTCTCCAGT 351
consensus_1847#1 TCTTTTCAA-GCACCACGATAATAGTGGGTCTTTTCATAAGCGTGGATTATGGCCTCTGC 333
* * **** * * *** * * *** ** ** * ** * * *
consensus_1847#0 AGAGCTATACCATACCGTAGAGCATGGATTCACGTGC-CATTTCAACAACA--GCGAAGC 408
consensus_1847#1 GATGAATTTCGATGCAGGGGGCGGGAGGTTTCAGCGCACGTCACAACTGTAAAGGGAAGT 393
* * * ** * * * * ** * ** * * **** * * ****
consensus_1847#0 TTG--TTCGAA---TATTTCTACCCACGGTTGGAT---CTTCTTGATCGCTTACATAGTA 460
consensus_1847#1 TGGGGTGTGAAAGCCATTTGGACGTTCGTTTACGTGGGCGCCCTCGCTGCTTTCGCTATG 453
* * * *** **** ** ** ** * * * * **** * *
consensus_1847#0 TTCTCGATTTC-CGCGCTCAACTTTCTTTCAATGTGTGAGA---- 500
consensus_1847#1 TTCTTCACCCTGCTAGAGGGACACTATACCACTGAGCAACAGAAC 498
**** * * * ** * * ** ** * * *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |