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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[CACCTAGTGAAGATAGTGATAGTTCTTCCACAACATCACATGTGGGTCCACCTAGAATGACATTATCTGAACGATTTGGTAAAATGGCACAATGGAGTGTAGATCGCAGAGATATGGAAAATATGCGTATTACAAAAGATGGAGAAAATGCAATGAAAGTTGTAATAGAGGGTGAAGAAAGAATTGCAAGACTAGGATATGATTCTCCACCACCAGGACATTATCCTGAATCACTATTAGCACAAGGACCAAGAGGTCTAGAATGTTGGGATGATGTTCGCGTTAGATATGATTACTATAAAGCAAGAGGATATCTTCGAGATCTTACTTTAGATGATTATATAAAATGGGAAGAATGGTGGTATAAATATCAAGAATGGTTAGAAGCAGAACGTTTTTACGAACAATGGGCCTCTTCAAACCGTCCTTCTGGTGGAAATCGAAAAAGACGCGGGCGGCGCAATAACACTACTCATTGAAATTTCTTTTCAAGGAAAATTATCCAGCTAGGTCTACATTTCAAGTTGGAAAATTACCAATGGCAG]
[+] EMBL BI516529 [CACCTAGTGAAGATAGTGATAGTTCTTCCACAACATCACATGTGGGTCCACCTAGAATGACATTATCTGAACGATTTGGTAAAATGGCACAATGGAGTGTAGATCGCAGAGATATGGAAAATATGCGTATTACAAAAGATGGAGAAAATGCAATGAAAGTTGTAATAGAGGGTGAAGAAAGAATTGCAAGACTAGGATATGATTCTCCACCACCAGGACATTATCCTGAATCACTATTAGCACAAGGACCAAGAGGTCTAGAATGTTGGGATGATGTTCGCGTTAGATATGATTACTATAAAGCAAGAGGATATCTTCGAGATCTTACTTTAGATGATTATATAAAATGGGAAGAATGGTGGTATAAATATCAAGAATGGTTAGAAGCAGAACGTTTTTACGAACAATGGGCCTCTTCAAACCGTCCTTCTGGTGGAAATCGAAAAAGACGCGGGCGGCGCAATAACACTACTCATTGAAATTTCTTTTCAAGGAAAATTATCCAGCTAGGTCTACATTTCAAGTTGGAAAATTACCAATGGCAG]
consensusID : consensus_1848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence
[CACCACCAGGACATTATCCTGAATCACTATTAGCACAAGGACCAAGAGGTCTAGNATGTTGGGATGATGTTCGCGTTAGATATGATTACTATAAAGCAAGAGGATATCTTCGAGATCTTACTTTAGATGATTATATAAAATGGGAAGAATGGTGGTATAAATATCAAGAATGGTTAGAAGCAGAACGTTTTTACGAACAATGGGCCTCTTCAAACCGTCCTTCTGGTGGAAATCGAAAAAGACGCGGGCGGCGCAATAACACTACTCATTGAAATTTCGTAAGCCTATTACAAATCATTCTTGATCATCATAGATATTAACATCATTAATAAAATGTACTGTAATATTTGTTGTGCTTAAAAAAAAGTGCGAGAAGTGTGTAAACGATCTATACAAACATACATGCATTCATATAAAAAGTACGTACGCAAGCGTATTTGTGTGTGTGTGT]
[+] EMBL BI504837 [CACCACCAGGACATTATCCTGAATCACTATTAGCACAAGGACCAAGAGGTCTAGNATGTTGGGATGATGTTCGCGTTAGATATGATTACTATAAAGCAAGAGGATATCTTCGAGATCTTACTTTAGATGATTATATAAAATGGGAAGAATGGTGGTATAAATATCAAGAATGGTTAGAAGCAGAACGTTTTTACGAACAATGGGCCTCTTCAAACCGTCCTTCTGGTGGAAATCGAAAAAGACGCGGGCGGCGCAATAACACTACTCATTGAAATTTCGTAAGCCTATTACAAATCATTCTTGATCATCATAGATATTAACATCATTAATAAAATGTACTGTAATATTTGTTGTGCTTAAAAAAAAGTGCGAGAAGTGTGTAAACGATCTATACAAACATACATGCATTCATATAAAAAGTACGTACGCAAGCGTATTTGTGTGTGTGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1848#0 CACCTAGTGAAGATAGTGATAGTTCTTCCACAACATCACATGTGGGTCCACCTAGAATGA 60
consensus_1848#1 ------------------------------------------------------------
consensus_1848#0 CATTATCTGAACGATTTGGTAAAATGGCACAATGGAGTGTAGATCGCAGAGATATGGAAA 120
consensus_1848#1 ------------------------------------------------------------
consensus_1848#0 ATATGCGTATTACAAAAGATGGAGAAAATGCAATGAAAGTTGTAATAGAGGGTGAAGAAA 180
consensus_1848#1 ------------------------------------------------------------
consensus_1848#0 GAATTGCAAGACTAGGATATGATTCTCCACCACCAGGACATTATCCTGAATCACTATTAG 240
consensus_1848#1 ---------------------------CACCACCAGGACATTATCCTGAATCACTATTAG 33
*********************************
consensus_1848#0 CACAAGGACCAAGAGGTCTAGAATGTTGGGATGATGTTCGCGTTAGATATGATTACTATA 300
consensus_1848#1 CACAAGGACCAAGAGGTCTAGNATGTTGGGATGATGTTCGCGTTAGATATGATTACTATA 93
********************* **************************************
consensus_1848#0 AAGCAAGAGGATATCTTCGAGATCTTACTTTAGATGATTATATAAAATGGGAAGAATGGT 360
consensus_1848#1 AAGCAAGAGGATATCTTCGAGATCTTACTTTAGATGATTATATAAAATGGGAAGAATGGT 153
************************************************************
consensus_1848#0 GGTATAAATATCAAGAATGGTTAGAAGCAGAACGTTTTTACGAACAATGGGCCTCTTCAA 420
consensus_1848#1 GGTATAAATATCAAGAATGGTTAGAAGCAGAACGTTTTTACGAACAATGGGCCTCTTCAA 213
************************************************************
consensus_1848#0 ACCGTCCTTCTGGTGGAAATCGAAAAAGACGCGGGCGGCGCAATAACACTACTCATTGAA 480
consensus_1848#1 ACCGTCCTTCTGGTGGAAATCGAAAAAGACGCGGGCGGCGCAATAACACTACTCATTGAA 273
************************************************************
consensus_1848#0 ATTTCTT---TTCAAGGAAAATTATCCA-GCTAGGTCTACATTTCAA----GTTGGAAAA 532
consensus_1848#1 ATTTCGTAAGCCTATTACAAATCATTCTTGATCATCATAGATATTAACATCATTAATAAA 333
***** * * **** ** * * * ** ** * ** ** ***
consensus_1848#0 TTAC-CAATGGCAG---------------------------------------------- 545
consensus_1848#1 ATGTACTGTAATATTTGTTGTGCTTAAAAAAAAGTGCGAGAAGTGTGTAAACGATCTATA 393
* * * *
consensus_1848#0 ----------------------------------------------------------
consensus_1848#1 CAAACATACATGCATTCATATAAAAAGTACGTACGCAAGCGTATTTGTGTGTGTGTGT 451
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |