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Apis mellifera
cluster # 1849 cluster # 1849       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1849#0 length = 516 sequences # 1  
 consensus_1849#1 length = 341 sequences # 1  
consensusID : consensus_1849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence 
                              [GACTGCTTGCATTTTCATGAGAATTTTTACTTCGTTACTACGTTTCGAGGTTTGTTGCATCGCATTTTGTATCATTTTGTGGATTCCTCGTCGTTGATAATTATTTATTTCGTTGACCTCTTTTCATTCTATTACGAATATAATAAACGTCGTTAACAATGTATTCGACGTTTATTTAATTGGGAAGATTTATATTTATAAACGATTTTTCTTTTATATATATATATAAAACAACGCTCCATTTTAATCTAATTTCACAGCAACCTCGACTGAGTTTCGTTTCGAAATCTGAAATAAGCAAGTAATAACAAAAGATTGGCCATCTCTTTTTAGTTGTACATATTAGGCTATTATGATTATGTATATTATTTTTAAATTATTCTCACTTTTATCTCGTTGTACGTAGCTTTGCTCTTTTTTTTTTTCCTCTTTTATATATATATATATATAAGAAGCTGCTAGAAAATATTTAATTTTTAGCGAATCCTTGTATAGGTCAGTGAATATTGAAATAAC]

[+] EMBL BI513304             [GACTGCTTGCATTTTCATGAGAATTTTTACTTCGTTACTACGTTTCGAGGTTTGTTGCATCGCATTTTGTATCATTTTGTGGATTCCTCGTCGTTGATAATTATTTATTTCGTTGACCTCTTTTCATTCTATTACGAATATAATAAACGTCGTTAACAATGTATTCGACGTTTATTTAATTGGGAAGATTTATATTTATAAACGATTTTTCTTTTATATATATATATAAAACAACGCTCCATTTTAATCTAATTTCACAGCAACCTCGACTGAGTTTCGTTTCGAAATCTGAAATAAGCAAGTAATAACAAAAGATTGGCCATCTCTTTTTAGTTGTACATATTAGGCTATTATGATTATGTATATTATTTTTAAATTATTCTCACTTTTATCTCGTTGTACGTAGCTTTGCTCTTTTTTTTTTTCCTCTTTTATATATATATATATATAAGAAGCTGCTAGAAAATATTTAATTTTTAGCGAATCCTTGTATAGGTCAGTGAATATTGAAATAAC]




>consensus_1849#0
GACTGCTTGCATTTTCATGAGAATTTTTACTTCGTTACTACGTTTCGAGGTTTGTTGCAT
CGCATTTTGTATCATTTTGTGGATTCCTCGTCGTTGATAATTATTTATTTCGTTGACCTC
TTTTCATTCTATTACGAATATAATAAACGTCGTTAACAATGTATTCGACGTTTATTTAAT
TGGGAAGATTTATATTTATAAACGATTTTTCTTTTATATATATATATAAAACAACGCTCC
ATTTTAATCTAATTTCACAGCAACCTCGACTGAGTTTCGTTTCGAAATCTGAAATAAGCA
AGTAATAACAAAAGATTGGCCATCTCTTTTTAGTTGTACATATTAGGCTATTATGATTAT
GTATATTATTTTTAAATTATTCTCACTTTTATCTCGTTGTACGTAGCTTTGCTCTTTTTT
TTTTTCCTCTTTTATATATATATATATATAAGAAGCTGCTAGAAAATATTTAATTTTTAG
CGAATCCTTGTATAGGTCAGTGAATATTGAAATAAC

consensusID : consensus_1849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence 
                              [GTTGCTTTTTTTTTTTTTTTTTTTATGATATATATATATAAGAAGCTGCTAGAAAATATTTAATTTTTAGCGAATCCTTGTATAGGTCAGTGAATATTGAAATAACATAATCTATGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAGATAAATTTTAAAAGGAGGAACGCAATTCGAACTNGAAAGAAACTGGAGAAAGTTCCAGATTTATTTTCAACGATTATGTTATCTCATTATTCGAAGGATAGNACGAAAGATGCTAAGCGTCGTTATATTAAAAATGTTACAAATCAAGTTGGGTTTCTCTAACCTTATGTATCCGAGCGCGATCGT]

[+] EMBL BI504829             [GTTGCTTTTTTTTTTTTTTTTTTTATGATATATATATATAAGAAGCTGCTAGAAAATATTTAATTTTTAGCGAATCCTTGTATAGGTCAGTGAATATTGAAATAACATAATCTATGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAGATAAATTTTAAAAGGAGGAACGCAATTCGAACTNGAAAGAAACTGGAGAAAGTTCCAGATTTATTTTCAACGATTATGTTATCTCATTATTCGAAGGATAGNACGAAAGATGCTAAGCGTCGTTATATTAAAAATGTTACAAATCAAGTTGGGTTTCTCTAACCTTATGTATCCGAGCGCGATCGT]




>consensus_1849#1
GTTGCTTTTTTTTTTTTTTTTTTTATGATATATATATATAAGAAGCTGCTAGAAAATATT
TAATTTTTAGCGAATCCTTGTATAGGTCAGTGAATATTGAAATAACATAATCTATGTTTT
CTAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAGATAAATTTTAAAAGGAGGAACGCAA
TTCGAACTNGAAAGAAACTGGAGAAAGTTCCAGATTTATTTTCAACGATTATGTTATCTC
ATTATTCGAAGGATAGNACGAAAGATGCTAAGCGTCGTTATATTAAAAATGTTACAAATC
AAGTTGGGTTTCTCTAACCTTATGTATCCGAGCGCGATCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1849#0      GACTGCTTGCATTTTCATGAGAATTTTTACTTCGTTACTACGTTTCGAGGTTTGTTGCAT 60
consensus_1849#1      ------------------------------------------------------------
                                                                                  

consensus_1849#0      CGCATTTTGTATCATTTTGTGGATTCCTCGTCGTTGATAATTATTTATTTCGTTGACCTC 120
consensus_1849#1      ------------------------------------------GTTGCTTTTTTT--TTTT 16
                                                                 **  ***  **    * 

consensus_1849#0      TTTTCATTCTATTACGAATATAATAAACGTCGTTAACAATGTATTCGACGTTTATTTAAT 180
consensus_1849#1      TTTTTTTTATGATATATATATATAAGAAGCTGCTAG-AAAATATTTAATTTTTAGCGAAT 75
                      ****  ** *  **   *****  * * *  * **  **  ****  *  ****   ***

consensus_1849#0      ---TGGGAAGATTTATATTTATAAACGATTTTTCTTTTATATATATATATAAAACAACGC 237
consensus_1849#1      CCTTGTATAGGTCAGTGAATATTGAAATAACATAATCTATGTTT-TCTAAAAAAAAAAAA 134
                         **   ** *   *   ***  *       *  * *** * * * ** **** **   

consensus_1849#0      TCCATTTTAATCTAATTTCACAGCAACCTCGACTGAGTTTCGTTTCGAAATCTGAAATAA 297
consensus_1849#1      AAAAAAAAAAAGGAAAAAAAGATAAATTTTAAAAGGA----GGAACGCAATTCGAACTNG 190
                         *    **   **    * *  **  *  *  *      *   ** ***  *** *  

consensus_1849#0      GCAAGTAATAACAAAAGATTGGCCATCTCTTTTTAGTTGTACATATTAGGCTATTATGAT 357
consensus_1849#1      A-AAGAAACTGGAGAAAGTTCCAGATTTATTTTCAACGAT-TATGTTATCTCATTATT-C 247
                        *** **    * **  **    ** * **** *    *  ** ***    *****   

consensus_1849#0      TATGTATATTATTTTTAAATTATTCTCACTTTTATCTCGTTGTACGTAGCTTTGCTCTTT 417
consensus_1849#1      GAAGGATAGNAC----GAAAGATGCTAAGCGTCGTTATATTAAAAATGTTACAAATCAAG 303
                       * * ***  *      **  ** ** *   *  *    **  *  *        **   

consensus_1849#0      TTTTTTTTCCTCTTTTATATATATATATATATAAGAAGCTGCTAGAAAATATTTAATTTT 477
consensus_1849#1      TTGGGTTTCTCTAACCTTATGTATCCGAGCGCGATCGT---------------------- 341
                      **   ****        *** ***         *                          

consensus_1849#0      TAGCGAATCCTTGTATAGGTCAGTGAATATTGAAATAAC 516
consensus_1849#1      ---------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)