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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1858 cluster # 1858       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1858#0 length = 549 sequences # 1  
consensus_1858#1 length = 475 sequences # 1  

consensusID : consensus_1858#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence
                              [AGTTGTCGGGGAAGTATGGAAGAAGAGAAAAAAAAAAGGAGCAAAAAAATAAATAATAATAATAATAATAATATTAATATTAATAATAATAATAATAATAATAATAATAATAATAAAAACATGAATTATAATAGAGTAATGTATTTTATGACGGGTTTTAATAGCGGTATTAATACGATATTAATAGCGATATTTAGCCGTAACTGATAATAAAGACACTATTTGAATGTGAAATTATTAGACGATAATGAGACACAGGATGTAACACAGTGGTAATAAACTGTATGGTAATAAACTACTATATAAGGTTTAAACGATTAGGCATTAAATCGTCGAAATGGGAAAGAAAATGGACGAGAACAAGTAAGATATTAAGATAATGATGGGGGAAAAAAAAAAAAAAAGAAAACGAATATCGAAACAATGAAAATCTATGGACTTTTTTTACCAAAGAATTTTTTCACAAAGAGAGATTTCAATATACACGCGTGCACGCGTTTTCCTTCACTTGTTTCTGTTCTTTTATTCTTGTATACGTACGATGGGATT]

[+] EMBL BI504805             [AGTTGTCGGGGAAGTATGGAAGAAGAGAAAAAAAAAAGGAGCAAAAAAATAAATAATAATAATAATAATAATATTAATATTAATAATAATAATAATAATAATAATAATAATAATAAAAACATGAATTATAATAGAGTAATGTATTTTATGACGGGTTTTAATAGCGGTATTAATACGATATTAATAGCGATATTTAGCCGTAACTGATAATAAAGACACTATTTGAATGTGAAATTATTAGACGATAATGAGACACAGGATGTAACACAGTGGTAATAAACTGTATGGTAATAAACTACTATATAAGGTTTAAACGATTAGGCATTAAATCGTCGAAATGGGAAAGAAAATGGACGAGAACAAGTAAGATATTAAGATAATGATGGGGGAAAAAAAAAAAAAAAGAAAACGAATATCGAAACAATGAAAATCTATGGACTTTTTTTACCAAAGAATTTTTTCACAAAGAGAGATTTCAATATACACGCGTGCACGCGTTTTCCTTCACTTGTTTCTGTTCTTTTATTCTTGTATACGTACGATGGGATT]


>consensus_1858#0 AGTTGTCGGGGAAGTATGGAAGAAGAGAAAAAAAAAAGGAGCAAAAAAATAAATAATAAT AATAATAATAATATTAATATTAATAATAATAATAATAATAATAATAATAATAATAAAAAC ATGAATTATAATAGAGTAATGTATTTTATGACGGGTTTTAATAGCGGTATTAATACGATA TTAATAGCGATATTTAGCCGTAACTGATAATAAAGACACTATTTGAATGTGAAATTATTA GACGATAATGAGACACAGGATGTAACACAGTGGTAATAAACTGTATGGTAATAAACTACT ATATAAGGTTTAAACGATTAGGCATTAAATCGTCGAAATGGGAAAGAAAATGGACGAGAA CAAGTAAGATATTAAGATAATGATGGGGGAAAAAAAAAAAAAAAGAAAACGAATATCGAA ACAATGAAAATCTATGGACTTTTTTTACCAAAGAATTTTTTCACAAAGAGAGATTTCAAT ATACACGCGTGCACGCGTTTTCCTTCACTTGTTTCTGTTCTTTTATTCTTGTATACGTAC GATGGGATT



consensusID : consensus_1858#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence
                              [TTTTTTCACAAAGAGAGATTTCAATATACACGCGTGCACGCGTTTTCCTTCACTTGTTTCTGTTCTTTTATTCTTNTATACGTACGATGGGATTAAATCACTTGGAGCGAGAGAATTTCGAAACTTCGATATACGAAATTTAATCCTTGTGCCGATAAAATACGAATAATACTTCAGAGCATCGCACACGCTATTAAGGAAAGAAAAAGGGAAGNACGTTTAATTATAATAAACCCCGATGCAAGATCTAAGGTACTATAAATCTCCAATTTCCTTCTATCTAATAATAAAAAGTCAAAACTCGTCGAGGAGTTTTTTGTTAGCAAGGGATTAAACTTCGATGATTCTCGCCAAATGATTTTTGATGCTTCCAGTATATTATGGAACGATTCNNNGATAAAATACTGTCGAATTTACGGGAACGTTCTCCGCTAAAAAAGAACAAATTTAAAATGTAAATGTTAAATGTAATATC]

[+] EMBL BI515882             [TTTTTTCACAAAGAGAGATTTCAATATACACGCGTGCACGCGTTTTCCTTCACTTGTTTCTGTTCTTTTATTCTTNTATACGTACGATGGGATTAAATCACTTGGAGCGAGAGAATTTCGAAACTTCGATATACGAAATTTAATCCTTGTGCCGATAAAATACGAATAATACTTCAGAGCATCGCACACGCTATTAAGGAAAGAAAAAGGGAAGNACGTTTAATTATAATAAACCCCGATGCAAGATCTAAGGTACTATAAATCTCCAATTTCCTTCTATCTAATAATAAAAAGTCAAAACTCGTCGAGGAGTTTTTTGTTAGCAAGGGATTAAACTTCGATGATTCTCGCCAAATGATTTTTGATGCTTCCAGTATATTATGGAACGATTCNNNGATAAAATACTGTCGAATTTACGGGAACGTTCTCCGCTAAAAAAGAACAAATTTAAAATGTAAATGTTAAATGTAATATC]


>consensus_1858#1 TTTTTTCACAAAGAGAGATTTCAATATACACGCGTGCACGCGTTTTCCTTCACTTGTTTC TGTTCTTTTATTCTTNTATACGTACGATGGGATTAAATCACTTGGAGCGAGAGAATTTCG AAACTTCGATATACGAAATTTAATCCTTGTGCCGATAAAATACGAATAATACTTCAGAGC ATCGCACACGCTATTAAGGAAAGAAAAAGGGAAGNACGTTTAATTATAATAAACCCCGAT GCAAGATCTAAGGTACTATAAATCTCCAATTTCCTTCTATCTAATAATAAAAAGTCAAAA CTCGTCGAGGAGTTTTTTGTTAGCAAGGGATTAAACTTCGATGATTCTCGCCAAATGATT TTTGATGCTTCCAGTATATTATGGAACGATTCNNNGATAAAATACTGTCGAATTTACGGG AACGTTCTCCGCTAAAAAAGAACAAATTTAAAATGTAAATGTTAAATGTAATATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1858#0      AGTTGTCGGGGAAGTATGGAAGAAGAGAAAAAAAAAAGGAGCAAAAAAATAAATAATAAT 60
consensus_1858#1      ---------------------TTTTTTCACAAAGAGAGATTTCAATATACACGCGTGCAC 39
                                                  * *** * **     ** * * *       * 

consensus_1858#0      AATAATAATAATATTAATATTAATAATAATAATAATA-ATAATAATAATAATAATAAAA- 118
consensus_1858#1      GCGTTTTCCTTCACTTGTTTCTGTTCTTTTATTCTTNTATACGTACGATGGGATTAAATC 99
                           *      * *  * *   *  *  ** *  *  ***   *  **   * ****  

consensus_1858#0      ACATGAATTATAATAGAGTAATGTATTTTATG-ACGGGTTTTAATAGCGGTATTAATACG 177
consensus_1858#1      ACTTGGAGCGAGAGAATTTCGAAACTTCGATATACGAAATTTAATCCTTGTGCCGATAAA 159
                      ** ** *     * *   *      **  **  ***   ******    **    ***  

consensus_1858#0      ATATTAATAGCGATATTTAGC--CGTAACTGATAATAAAGACACTATTTGAATGTGAAAT 235
consensus_1858#1      ATACGAATAATACTTCAGAGCATCGCACACGCTATTAAGGAAAGAAAAAGGGAAGNACGT 219
                      ***  ****    *    ***  ** *   * ** *** ** *  *   *      *  *

consensus_1858#0      T--ATTAGACGATAATGAGACACAGGATGTAACACAGTGGTAATAAACTGTATGGTAATA 293
consensus_1858#1      TTAATTATAATAAACCCCGATGCAAGATCTAAGGTACTATAAATCTCCAATTTCCTTCTA 279
                      *  **** *  * *    **  ** *** ***   * *   ***   *  * *  *  **

consensus_1858#0      AACTACTATATAAGGTTTAAACG-ATTAGGCATTAAATCGTCGAAATGGGAAAGAAAATG 352
consensus_1858#1      TCTAATAATAAAAAGTCAAAACTCGTCGAGGAGTTTTTTGTTAGCAAGGGATTAAACTTC 339
                          *  *** ** **  ****   *   * * *   * **    * ****   **  * 

consensus_1858#0      GACGAG----AACAAGTAAGATATTAAGATAATGATGGGGGAAAAAAAAAAAAAAAGA-A 407
consensus_1858#1      GATGATTCTCGCCAAATGATTTTTGATGCTTCCAGTATATTATGGAACGATTCNNNGATA 399
                      ** **       *** * *  * * * * *     *     *   **  *      ** *

consensus_1858#0      AACGAATATCGAAACAATGAAAATCTATGGACTTTTTTTACCAAAGAATTTTTTCACAAA 467
consensus_1858#1      AAATACTGTCGAATTTACGGGAAC-----GTTCTCCGCTAAAAAAGAACAAATTTAAAAT 454
                      **  * * *****   * *  **      *   *    **  ******    ** * ** 

consensus_1858#0      GAGAGATTTCAATATACACGCGTGCACGCGTTTTCCTTCACTTGTTTCTGTTCTTTTATT 527
consensus_1858#1      GTAAATGTTAAATGTAATATC--------------------------------------- 475
                      *  *   ** *** **    *                                       

consensus_1858#0      CTTGTATACGTACGATGGGATT 549
consensus_1858#1      ----------------------
                                            




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)