These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [ATAATGGAAAAAATGAAGAAGTTTTACCTCAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAAAAACCTTTAATAGCTGCTATAAACGGATATGCTCTAGGAGTAGGATTTGAACTTGCATTAATGTGCGATCTTAGAGTAATGGAAGAAAGTGCATTATTAGGTTTTGCCAATAGACGATTTGGGATACCCATATTATGTGGTGGTACGGTTCGATTACCTGCTCTAATTGGATATTCAAGAGCAATGGATTTGATTTTAACTGGTCGTCATATTGATGCAAAAGAAGCATTTTCATGTGGTTTAATTAATCGTTATACAGCCGTTGGTAACGTGATAGGACATGCAGTAAATTTTGCAAGATCTTTTGTGAAGTTTCCCAAAAAAACACTGCTTGCCGATCGAGCTTCTGTACATTATGCTACATTTTCTGCTAAACAATTAGAAGAAGCTATGCAATTTGAGAAAGACAATGCATCTCATTTATTATTTGAAGAAGGAGTTGAAGGTGNNNAAAGGTTTGTTACAGAGGGATTAGGAAAACATGGAAAATTTTATAATATTACGAAAATAAATTTGAAATTTAAGGAATTGGATAAAGATCTTTTATG] [+] EMBL BI510559 [ATAATGGAAAAAATGAAGAAGTTTTACCTCAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAAAAACCTTTAATAGCTGCTATAAACGGATATGCTCTAGGAGTAGGATTTGAACTTGCATTAATGTGCGATCTTAGAGTAATGGAAGAAAGTGCATTATTAGGTTTTGCCAATAGACGATTTGGGATACCCATATTATGTGGTGGTACGGTTCGATTACCTGCTCTAATTGGATATTCAAGAGCAATGGATTTGATTTTAACTGGTCGTCATATTGATGCAAAAGAAGCATTTTCATGTGGTTTAATTAATCGTTATACAGCCGTTGGTAACGTGATAGGACATGCAGTAAATTTTGCAAGATCTTTTGTGAAGTTTCCCAAAAAAACACTGCTTGCCGATCGAGCTTCTGTACATTATGCTACATTTTCTGCTAAACAATTAGAAGAAGCTATGCAATTTGAGAAAGACAATGCATCTCATTTATTATTTGAAGAAGGAGTTGAAGGTGNNNAAAGGTTTGTTACAGAGGGATTAGGAAAACATGGAAAATTTTATAATATTACGAAAATAAATTTGAAATTTAAGGAATTGGATAAAGATCTTTTATG] consensusID : consensus_1889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [TTTTTTATACAAATGCATTCTATAAAGCAAATATCGAATATAATCAATTTATATTATAAAAGTTATTTACGAAGATGTTTAACCTCTAAATCATCTGAAAATGTTTTGAAAGAAATTGATAGAGAACAAAAGGAAAAAAATATAGTAGTGGAATATTTTGAAGATGTTGCTATGATTGGTATAAATCGACCTGAAACAAAAAATGCTTTAAATGTTGCAACTGCACAAGAACTGGCAGATGAAATAGATAAATTTGAAAATGATGAAAACTGTTTAATCGGTGTACTTCATGGAATAGGAGGAAATTTTTGTAGTGGTTATGATCTTAAAGAAATTGCACAATATAATGGAAAAAATGAAGAAGTTTTACCNNAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAA] [+] EMBL BI504736 [TTTTTTATACAAATGCATTCTATAAAGCAAATATCGAATATAATCAATTTATATTATAAAAGTTATTTACGAAGATGTTTAACCTCTAAATCATCTGAAAATGTTTTGAAAGAAATTGATAGAGAACAAAAGGAAAAAAATATAGTAGTGGAATATTTTGAAGATGTTGCTATGATTGGTATAAATCGACCTGAAACAAAAAATGCTTTAAATGTTGCAACTGCACAAGAACTGGCAGATGAAATAGATAAATTTGAAAATGATGAAAACTGTTTAATCGGTGTACTTCATGGAATAGGAGGAAATTTTTGTAGTGGTTATGATCTTAAAGAAATTGCACAATATAATGGAAAAAATGAAGAAGTTTTACCNNAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1889#0 ATAATGGAAAAAATGAAGAAGTTTTACCTCAATTTGGAGCATTGGCTAATAAAATTGAAT 60 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 TGAGTAAAAAACCTTTAATAGCTGCTATAAACGGATATGCTCTAGGAGTAGGATTTGAAC 120 consensus_1889#1 ----------------------TTTTTTATACAAATGCATTCTATAAAGCAAATATCGAA 38 * * ** ** ** **** * ** * * consensus_1889#0 TTGCATTAATGTGCGATCTTAGAGTAATGGAAGAAAGTGCATTAT-TAGGTTTTGCCAAT 179 consensus_1889#1 TATAATCAATTTATATTATAAAAGTTATTTACGAAGATGTTTAACCTCTAAATCATCTGA 98 * ** *** * * * * *** ** * *** ** * * * * * consensus_1889#0 AGACGATTTGGGATACCCATATTATGTGGTGGTACGGTTCGATTACCTGCTCTAATTGGA 239 consensus_1889#1 AAATGTTTTGAAAGA-----AATTGATAGAGAACAAAAGGAAAAAAATATAGTAGTGGAA 153 * * * **** * * * * * * * * * * ** * * * consensus_1889#0 TATTCAAGAGCAATGGATTTGATTTTAACTGGTCGTCATATTGATGCAAAAGAAGCATTT 299 consensus_1889#1 TATTTTGAAGATGTTGCTATGATTGGTATAAATCGAC---CTGAAACAAAAAATGC---T 207 **** ** * * * ***** * *** * *** ***** * ** * consensus_1889#0 TCATGTGGTTTAATTAATCGTTATACAGCCGTTGGTA-ACGTGATAGGACATGCAGTAAA 358 consensus_1889#1 TTAAATGTTGCAACTG-------CACAAGAACTGGCAGATGAAATAGATAAATTTGAAAA 260 * * ** * ** * *** *** * * * **** * * *** consensus_1889#0 TTTTGCAAGATCTTTTGTGAAGTTTCCCAAAAAAACACTGCTTGCCGATCGAGCTTCTGT 418 consensus_1889#1 TGATGAAAACTGTTTAATCGGTGTACTTCATGGAATAG--------GAGGAAATTTTTGT 312 * ** ** * *** * * * * ** * ** * ** *** consensus_1889#0 ACATTATGCTACATTTTCTGCTAAACAATTAGAAGAAGCTATGCAATTTGAGAAAGACAA 478 consensus_1889#1 A----GTGGT-TATGATCT--TAAAGAAATTGCA----CAATATAA--TGGAAAAAATGA 359 * ** * ** *** **** ** * * * * ** ** ** *** * * consensus_1889#0 TGCATCTCATTTATTATTTGAAGAAGGAGTTGAAGGTGNNNAAAGGTTTGTTACAGAGGG 538 consensus_1889#1 AGAAGTTTTACCNNAATTTGGAGCATTGGCTAATAAAATTGAA---TTGAGTAAA----- 411 * * * ***** ** * * * * ** ** ** * consensus_1889#0 ATTAGGAAAACATGGAAAATTTTATAATATTACGAAAATAAATTTGAAATTTAAGGAATT 598 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 GGATAAAGATCTTTTATG 616 consensus_1889#1 ------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |