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Apis mellifera
cluster # 1889 cluster # 1889       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1889#0 length = 616 sequences # 1  
consensus_1889#1 length = 411 sequences # 1  

consensusID : consensus_1889#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence
                              [ATAATGGAAAAAATGAAGAAGTTTTACCTCAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAAAAACCTTTAATAGCTGCTATAAACGGATATGCTCTAGGAGTAGGATTTGAACTTGCATTAATGTGCGATCTTAGAGTAATGGAAGAAAGTGCATTATTAGGTTTTGCCAATAGACGATTTGGGATACCCATATTATGTGGTGGTACGGTTCGATTACCTGCTCTAATTGGATATTCAAGAGCAATGGATTTGATTTTAACTGGTCGTCATATTGATGCAAAAGAAGCATTTTCATGTGGTTTAATTAATCGTTATACAGCCGTTGGTAACGTGATAGGACATGCAGTAAATTTTGCAAGATCTTTTGTGAAGTTTCCCAAAAAAACACTGCTTGCCGATCGAGCTTCTGTACATTATGCTACATTTTCTGCTAAACAATTAGAAGAAGCTATGCAATTTGAGAAAGACAATGCATCTCATTTATTATTTGAAGAAGGAGTTGAAGGTGNNNAAAGGTTTGTTACAGAGGGATTAGGAAAACATGGAAAATTTTATAATATTACGAAAATAAATTTGAAATTTAAGGAATTGGATAAAGATCTTTTATG]

[+] EMBL BI510559             [ATAATGGAAAAAATGAAGAAGTTTTACCTCAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAAAAACCTTTAATAGCTGCTATAAACGGATATGCTCTAGGAGTAGGATTTGAACTTGCATTAATGTGCGATCTTAGAGTAATGGAAGAAAGTGCATTATTAGGTTTTGCCAATAGACGATTTGGGATACCCATATTATGTGGTGGTACGGTTCGATTACCTGCTCTAATTGGATATTCAAGAGCAATGGATTTGATTTTAACTGGTCGTCATATTGATGCAAAAGAAGCATTTTCATGTGGTTTAATTAATCGTTATACAGCCGTTGGTAACGTGATAGGACATGCAGTAAATTTTGCAAGATCTTTTGTGAAGTTTCCCAAAAAAACACTGCTTGCCGATCGAGCTTCTGTACATTATGCTACATTTTCTGCTAAACAATTAGAAGAAGCTATGCAATTTGAGAAAGACAATGCATCTCATTTATTATTTGAAGAAGGAGTTGAAGGTGNNNAAAGGTTTGTTACAGAGGGATTAGGAAAACATGGAAAATTTTATAATATTACGAAAATAAATTTGAAATTTAAGGAATTGGATAAAGATCTTTTATG]


>consensus_1889#0 ATAATGGAAAAAATGAAGAAGTTTTACCTCAATTTGGAGCATTGGCTAATAAAATTGAAT TGAGTAAAAAACCTTTAATAGCTGCTATAAACGGATATGCTCTAGGAGTAGGATTTGAAC TTGCATTAATGTGCGATCTTAGAGTAATGGAAGAAAGTGCATTATTAGGTTTTGCCAATA GACGATTTGGGATACCCATATTATGTGGTGGTACGGTTCGATTACCTGCTCTAATTGGAT ATTCAAGAGCAATGGATTTGATTTTAACTGGTCGTCATATTGATGCAAAAGAAGCATTTT CATGTGGTTTAATTAATCGTTATACAGCCGTTGGTAACGTGATAGGACATGCAGTAAATT TTGCAAGATCTTTTGTGAAGTTTCCCAAAAAAACACTGCTTGCCGATCGAGCTTCTGTAC ATTATGCTACATTTTCTGCTAAACAATTAGAAGAAGCTATGCAATTTGAGAAAGACAATG CATCTCATTTATTATTTGAAGAAGGAGTTGAAGGTGNNNAAAGGTTTGTTACAGAGGGAT TAGGAAAACATGGAAAATTTTATAATATTACGAAAATAAATTTGAAATTTAAGGAATTGG ATAAAGATCTTTTATG



consensusID : consensus_1889#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence
                              [TTTTTTATACAAATGCATTCTATAAAGCAAATATCGAATATAATCAATTTATATTATAAAAGTTATTTACGAAGATGTTTAACCTCTAAATCATCTGAAAATGTTTTGAAAGAAATTGATAGAGAACAAAAGGAAAAAAATATAGTAGTGGAATATTTTGAAGATGTTGCTATGATTGGTATAAATCGACCTGAAACAAAAAATGCTTTAAATGTTGCAACTGCACAAGAACTGGCAGATGAAATAGATAAATTTGAAAATGATGAAAACTGTTTAATCGGTGTACTTCATGGAATAGGAGGAAATTTTTGTAGTGGTTATGATCTTAAAGAAATTGCACAATATAATGGAAAAAATGAAGAAGTTTTACCNNAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAA]

[+] EMBL BI504736             [TTTTTTATACAAATGCATTCTATAAAGCAAATATCGAATATAATCAATTTATATTATAAAAGTTATTTACGAAGATGTTTAACCTCTAAATCATCTGAAAATGTTTTGAAAGAAATTGATAGAGAACAAAAGGAAAAAAATATAGTAGTGGAATATTTTGAAGATGTTGCTATGATTGGTATAAATCGACCTGAAACAAAAAATGCTTTAAATGTTGCAACTGCACAAGAACTGGCAGATGAAATAGATAAATTTGAAAATGATGAAAACTGTTTAATCGGTGTACTTCATGGAATAGGAGGAAATTTTTGTAGTGGTTATGATCTTAAAGAAATTGCACAATATAATGGAAAAAATGAAGAAGTTTTACCNNAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAA]


>consensus_1889#1 TTTTTTATACAAATGCATTCTATAAAGCAAATATCGAATATAATCAATTTATATTATAAA AGTTATTTACGAAGATGTTTAACCTCTAAATCATCTGAAAATGTTTTGAAAGAAATTGAT AGAGAACAAAAGGAAAAAAATATAGTAGTGGAATATTTTGAAGATGTTGCTATGATTGGT ATAAATCGACCTGAAACAAAAAATGCTTTAAATGTTGCAACTGCACAAGAACTGGCAGAT GAAATAGATAAATTTGAAAATGATGAAAACTGTTTAATCGGTGTACTTCATGGAATAGGA GGAAATTTTTGTAGTGGTTATGATCTTAAAGAAATTGCACAATATAATGGAAAAAATGAA GAAGTTTTACCNNAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1889#0      ATAATGGAAAAAATGAAGAAGTTTTACCTCAATTTGGAGCATTGGCTAATAAAATTGAAT 60
consensus_1889#1      ------------------------------------------------------------
                                                                                  

consensus_1889#0      TGAGTAAAAAACCTTTAATAGCTGCTATAAACGGATATGCTCTAGGAGTAGGATTTGAAC 120
consensus_1889#1      ----------------------TTTTTTATACAAATGCATTCTATAAAGCAAATATCGAA 38
                                            *  * ** **  **    ****  *     ** *  * 

consensus_1889#0      TTGCATTAATGTGCGATCTTAGAGTAATGGAAGAAAGTGCATTAT-TAGGTTTTGCCAAT 179
consensus_1889#1      TATAATCAATTTATATTATAAAAGTTATTTACGAAGATGTTTAACCTCTAAATCATCTGA 98
                      *   ** *** *    * * * *** **  * ***  **  * *  *     *   *   

consensus_1889#0      AGACGATTTGGGATACCCATATTATGTGGTGGTACGGTTCGATTACCTGCTCTAATTGGA 239
consensus_1889#1      AAATGTTTTGAAAGA-----AATTGATAGAGAACAAAAGGAAAAAAATATAGTAGTGGAA 153
                      * * * ****  * *     * *   * * *          *  *  *    ** * * *

consensus_1889#0      TATTCAAGAGCAATGGATTTGATTTTAACTGGTCGTCATATTGATGCAAAAGAAGCATTT 299
consensus_1889#1      TATTTTGAAGATGTTGCTATGATTGGTATAAATCGAC---CTGAAACAAAAAATGC---T 207
                      ****    **   * * * *****   *    *** *    ***  ***** * **   *

consensus_1889#0      TCATGTGGTTTAATTAATCGTTATACAGCCGTTGGTA-ACGTGATAGGACATGCAGTAAA 358
consensus_1889#1      TTAAATGTTGCAACTG-------CACAAGAACTGGCAGATGAAATAGATAAATTTGAAAA 260
                      * *  ** *  ** *         ***     *** * * *  ****   *    * ***

consensus_1889#0      TTTTGCAAGATCTTTTGTGAAGTTTCCCAAAAAAACACTGCTTGCCGATCGAGCTTCTGT 418
consensus_1889#1      TGATGAAAACTGTTTAATCGGTGTACTTCATGGAATAG--------GAGGAAATTTTTGT 312
                      *  ** **  * ***  *     * *   *   ** *         **   *  ** ***

consensus_1889#0      ACATTATGCTACATTTTCTGCTAAACAATTAGAAGAAGCTATGCAATTTGAGAAAGACAA 478
consensus_1889#1      A----GTGGT-TATGATCT--TAAAGAAATTGCA----CAATATAA--TGGAAAAAATGA 359
                      *     ** *  **  ***  **** ** * * *    * **  **  **  *** *  *

consensus_1889#0      TGCATCTCATTTATTATTTGAAGAAGGAGTTGAAGGTGNNNAAAGGTTTGTTACAGAGGG 538
consensus_1889#1      AGAAGTTTTACCNNAATTTGGAGCATTGGCTAATAAAATTGAA---TTGAGTAAA----- 411
                       * *  *        ***** ** *   * * *        **   **   ** *     

consensus_1889#0      ATTAGGAAAACATGGAAAATTTTATAATATTACGAAAATAAATTTGAAATTTAAGGAATT 598
consensus_1889#1      ------------------------------------------------------------
                                                                                  

consensus_1889#0      GGATAAAGATCTTTTATG 616
consensus_1889#1      ------------------
                                        




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)