These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [TGGAGGAAAGGGAGATACATGTATTGTAATTAGACGCACCATTCGAAATAATTAAAAGGCTATGTGTTTAAACTGTTTGTTACCTGATATATTTTATAAATTCCCTTGAAATAAGGCATAAGTATCGAAATATCGAAGAAATGCTACGTTTCCCCCTATATTTAATATTAATGTTCGATTTATTTTTATCAAACGATTAGAAATTTTTAAACTATTTTGAACAGAACACCTGATTAATTAGCTACAAAATAAACTTATAGCGTTATAATATTATTATTGTATATTATACATCGTTTCGTCTTAGGAAAGCACAACATTCGCTGTGTCAAAAAATTCGTAAAATATTTAATTATCGTGGAAAATTTTTACTTTAGAATAATTCTATTCAGATATTATATATATCGTATTATTTAAATTATACAAATTTGACTAGCTAATTTCTTTGTTTCATATCGAATATCCAAGAATGAAATGAAGAAAATTCTTTTGCAAAACTATATAGATTTCTTTAAATATAATATACTCTTGATATTAAATGTGCAAAAAATGTGTTATAGTTTTATCAGTCTCATTAACGACCTAATT] [+] EMBL BI512124 [TGGAGGAAAGGGAGATACATGTATTGTAATTAGACGCACCATTCGAAATAATTAAAAGGCTATGTGTTTAAACTGTTTGTTACCTGATATATTTTATAAATTCCCTTGAAATAAGGCATAAGTATCGAAATATCGAAGAAATGCTACGTTTCCCCCTATATTTAATATTAATGTTCGATTTATTTTTATCAAACGATTAGAAATTTTTAAACTATTTTGAACAGAACACCTGATTAATTAGCTACAAAATAAACTTATAGCGTTATAATATTATTATTGTATATTATACATCGTTTCGTCTTAGGAAAGCACAACATTCGCTGTGTCAAAAAATTCGTAAAATATTTAATTATCGTGGAAAATTTTTACTTTAGAATAATTCTATTCAGATATTATATATATCGTATTATTTAAATTATACAAATTTGACTAGCTAATTTCTTTGTTTCATATCGAATATCCAAGAATGAAATGAAGAAAATTCTTTTGCAAAACTATATAGATTTCTTTAAATATAATATACTCTTGATATTAAATGTGCAAAAAATGTGTTATAGTTTTATCAGTCTCATTAACGACCTAATT] consensusID : consensus_1913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [TTTATCCAGTCCATCTTCCTTCGATTTTGTTCCCGTCGAATTTACCGGTGGAAGAAATACGCGTTGTTTTTAGCAGGCCTAAAAACGTTACCGCTGCTTTTTACGATCGTTAAGAACACTCGCTCTTCTCCTTTATTTCTTCTCCTTGGAGGAACTTCCCGATTCTTTTTTATCCTGGAATGGATTGACTGATCGATCGTTGAAAAAGGGCACAAAGAAATTAAAGTTTGGATGTATTATAGTGATAATTTATTCGATGAAAGTTATTTTTTTTATTCCTTCGATGGAGGAAAGGGAGATACATGTATTGTAATTAGACGCACCATTCGAAGGAATA] [+] EMBL BI504656 [TTTATCCAGTCCATCTTCCTTCGATTTTGTTCCCGTCGAATTTACCGGTGGAAGAAATACGCGTTGTTTTTAGCAGGCCTAAAAACGTTACCGCTGCTTTTTACGATCGTTAAGAACACTCGCTCTTCTCCTTTATTTCTTCTCCTTGGAGGAACTTCCCGATTCTTTTTTATCCTGGAATGGATTGACTGATCGATCGTTGAAAAAGGGCACAAAGAAATTAAAGTTTGGATGTATTATAGTGATAATTTATTCGATGAAAGTTATTTTTTTTATTCCTTCGATGGAGGAAAGGGAGATACATGTATTGTAATTAGACGCACCATTCGAAGGAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1913#0 TGGAGGAAAGGGAGATACATGTATTGTAATTAGACGCACCATTCGAAATAATTAAAAGGC 60 consensus_1913#1 ------------------------------------------------------------ consensus_1913#0 TATGTGTTTAAACTGTTTGTTACCTGATATATTTTATAAATTCCCTTGAAATAAGGCATA 120 consensus_1913#1 ------------------------------------------------------------ consensus_1913#0 AGTATCGAAATATCGAAGAAATGCTACGTTTCCCCCTATATTTAATATTAATGTTCGATT 180 consensus_1913#1 ---------------------------TTTATCCAGTCCATCTTCCTTCGAT-TTTGTTC 32 ** ** * ** * * ** ** * * consensus_1913#0 TATTTTTATCAAACGATTAGAAATTTTTAAACTATTTTGAACAGAACACCTGATTAATTA 240 consensus_1913#1 CCGTCGAATTTACCGGTGGAAGAAATACGCGTTGTTTTTAGCAGG---CCTAAAAACGTT 89 * ** * ** * * * * * **** * *** *** * * * consensus_1913#0 GCTACAAAATAAACTTATAG-CGTTATAATATTATTATTGTATATTATACATCGTTTCGT 299 consensus_1913#1 ACCGCTGCTT---TTTACGATCGTTAAGAACACTCGCTCTTCTCCTTTATTTCTTCTCCT 146 * * * *** ***** * * * * * ** ** * ** * consensus_1913#0 CTTAGGAAAGCACAACATTCGCTGTGTCAAAAAATTCGTAAAATATTTAATTATCGTGGA 359 consensus_1913#1 TGGAGGAACTTCCCGATTCTTTTTTATCCTGGAATGGATTGACTGATCGAT---CGTTGA 203 ***** * * * * ** *** * * * * ** *** ** consensus_1913#0 AAATTTTTACTTTAGAATAATTCTATTCAGATATTATATATATCGTATTATTTAAATTAT 419 consensus_1913#1 AAAAGGGCAC---AAAGAAATT------AAAGTTTGGATGTATTATAGTGAT-AATTTAT 253 *** ** * * **** * * ** ** *** ** * * ** **** consensus_1913#0 ACAAATTTGACTAGCTAATTTCTTTGTTTCATATCGAATATCCAAGAATGAAATGAAGAA 479 consensus_1913#1 TCGA---TGAA-AGTTATTTTTTTTATTCCTT---------CGATGGAGGAAAGGGAGAT 300 * * *** ** ** *** *** ** * * * * * * **** * *** consensus_1913#0 AATTCTTTTGCAAAACTATATAGATTTCTTTAAATATAATATACTCTTGATATTAAATGT 539 consensus_1913#1 ACATGTATTGTAA--TTAGACGCACCATTCGAAGGAATA--------------------- 337 * * * *** ** ** * * * ** * * consensus_1913#0 GCAAAAAATGTGTTATAGTTTTATCAGTCTCATTAACGACCTAATT 585 consensus_1913#1 ---------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |