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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1920 cluster # 1920       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1920#0 length = 499 sequences # 1  
 consensus_1920#1 length = 482 sequences # 1  
consensusID : consensus_1920#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence 
                              [ACTACTTTACAAGTTCCACTGAAAGCAGGATATGACTTAAAAAAGAATACATATAGAATTGGATTAATAATATCATCGATAAGAAATAGCACAAAATAGGAACAACTGATCAGCGCAGATCTGGATTATCATCAACTTGCTTTTTAATACGTAATAATACTGTTGTGTACCACTGATCCAATCGTGAAATTGAATCATATTCCTTTACTGCTTCTGTAAAACCTTCGAGTTGTTGTTCCTCGATATGTTCTATTAATGTCTTTATCAATTTGTATTCTCTAGAATCTTGGAATGCAGGATATTGTTCTTGATAACGTTCAATTGCATGTTGAGCATTTAATACATCAACACACAAATGGCATAGCGCCGCTCGGAAAAAATATTCCTTTGCACTATATTTCAATAAAGAACTTTCTAAAGATGCAGATGCAACCTGTTCGTAAATTTGAATAGCTTTTTCATAATTTTCAAGTTGTGCAGCATACTGTGCAACTTTCAA]

[+] EMBL BI512889             [ACTACTTTACAAGTTCCACTGAAAGCAGGATATGACTTAAAAAAGAATACATATAGAATTGGATTAATAATATCATCGATAAGAAATAGCACAAAATAGGAACAACTGATCAGCGCAGATCTGGATTATCATCAACTTGCTTTTTAATACGTAATAATACTGTTGTGTACCACTGATCCAATCGTGAAATTGAATCATATTCCTTTACTGCTTCTGTAAAACCTTCGAGTTGTTGTTCCTCGATATGTTCTATTAATGTCTTTATCAATTTGTATTCTCTAGAATCTTGGAATGCAGGATATTGTTCTTGATAACGTTCAATTGCATGTTGAGCATTTAATACATCAACACACAAATGGCATAGCGCCGCTCGGAAAAAATATTCCTTTGCACTATATTTCAATAAAGAACTTTCTAAAGATGCAGATGCAACCTGTTCGTAAATTTGAATAGCTTTTTCATAATTTTCAAGTTGTGCAGCATACTGTGCAACTTTCAA]




>consensus_1920#0
ACTACTTTACAAGTTCCACTGAAAGCAGGATATGACTTAAAAAAGAATACATATAGAATT
GGATTAATAATATCATCGATAAGAAATAGCACAAAATAGGAACAACTGATCAGCGCAGAT
CTGGATTATCATCAACTTGCTTTTTAATACGTAATAATACTGTTGTGTACCACTGATCCA
ATCGTGAAATTGAATCATATTCCTTTACTGCTTCTGTAAAACCTTCGAGTTGTTGTTCCT
CGATATGTTCTATTAATGTCTTTATCAATTTGTATTCTCTAGAATCTTGGAATGCAGGAT
ATTGTTCTTGATAACGTTCAATTGCATGTTGAGCATTTAATACATCAACACACAAATGGC
ATAGCGCCGCTCGGAAAAAATATTCCTTTGCACTATATTTCAATAAAGAACTTTCTAAAG
ATGCAGATGCAACCTGTTCGTAAATTTGAATAGCTTTTTCATAATTTTCAAGTTGTGCAG
CATACTGTGCAACTTTCAA

consensusID : consensus_1920#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence 
                              [GTTAACATCTTCAAAGGGCTTCTTTGGTTCGCTATTTGGAGGATCATCAAAGTTTGAAGAAGCTGTAGAATGTTATCAACGTGCTGCAAATATGTTCAAGATGGCAAAGAATTGGAGTTCTGCAGGAAGTGCATTTTATGAAGCAGCAGAGTTACATGCTAAAGCAGGCAATCGTCATGATGCAGCTACTAATTATGTAGATGCTGCTAATTGTTTTAAAAAATCTAATATAAATGAGGCAATCAGTTGTCTATTAAAGGCAATTGAAATTTACACTGATATGGGTCGATTCACAATGGCAGCCAAACATCATCAAAGTATAGCTGAGATGTATGAAAGTGAAGCTGTAGATCTTGAGAGAGCAGTTCATCATTATGAGCAAGCTGCTGATTATTTTCGTGGAGAAGAGAGCAATTCCTCTGCAAATAAATGTCTTTTGAAAGTTGCACAGTATGCTGCACAACTTGAAAATTATGAAAAAG]

[+] EMBL BI515639             [GTTAACATCTTCAAAGGGCTTCTTTGGTTCGCTATTTGGAGGATCATCAAAGTTTGAAGAAGCTGTAGAATGTTATCAACGTGCTGCAAATATGTTCAAGATGGCAAAGAATTGGAGTTCTGCAGGAAGTGCATTTTATGAAGCAGCAGAGTTACATGCTAAAGCAGGCAATCGTCATGATGCAGCTACTAATTATGTAGATGCTGCTAATTGTTTTAAAAAATCTAATATAAATGAGGCAATCAGTTGTCTATTAAAGGCAATTGAAATTTACACTGATATGGGTCGATTCACAATGGCAGCCAAACATCATCAAAGTATAGCTGAGATGTATGAAAGTGAAGCTGTAGATCTTGAGAGAGCAGTTCATCATTATGAGCAAGCTGCTGATTATTTTCGTGGAGAAGAGAGCAATTCCTCTGCAAATAAATGTCTTTTGAAAGTTGCACAGTATGCTGCACAACTTGAAAATTATGAAAAAG]




>consensus_1920#1
GTTAACATCTTCAAAGGGCTTCTTTGGTTCGCTATTTGGAGGATCATCAAAGTTTGAAGA
AGCTGTAGAATGTTATCAACGTGCTGCAAATATGTTCAAGATGGCAAAGAATTGGAGTTC
TGCAGGAAGTGCATTTTATGAAGCAGCAGAGTTACATGCTAAAGCAGGCAATCGTCATGA
TGCAGCTACTAATTATGTAGATGCTGCTAATTGTTTTAAAAAATCTAATATAAATGAGGC
AATCAGTTGTCTATTAAAGGCAATTGAAATTTACACTGATATGGGTCGATTCACAATGGC
AGCCAAACATCATCAAAGTATAGCTGAGATGTATGAAAGTGAAGCTGTAGATCTTGAGAG
AGCAGTTCATCATTATGAGCAAGCTGCTGATTATTTTCGTGGAGAAGAGAGCAATTCCTC
TGCAAATAAATGTCTTTTGAAAGTTGCACAGTATGCTGCACAACTTGAAAATTATGAAAA
AG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1920#0      ACTACTTTACAAGTTCCACTGAAAGCAGGATATGACTTAAAAAAGAATACATATAGAATT 60
consensus_1920#1      ----GTTAACATCTTCAAAGGGCTTCTTTGGTTCGCTATTTGGAGGAT-CATCAAAGTTT 55
                           ** ***  *** *  *    *      *  **      ** ** ***  *   **

consensus_1920#0      GGATTAATAATATCATCGATAAGAAATAGCACAAAATAGGAACAACTGATCAGCGCAGAT 120
consensus_1920#1      GAAGAAGCTGTAGAAT-GTTATCAACGTGCTGCAAATATGTTCAA--GAT-GGCAAAGAA 111
                      * *  *    **  ** * **  **   **   ***** *  ***  ***  **  *** 

consensus_1920#0      CTGGATTATCATCA-ACTTGCTTTTTAATACGTAATAATACTGTTGTGTACCACTGATCC 179
consensus_1920#1      TTGGAGTTCTGCAGGAAGTGCATTT---TATGAAGCAGCAGAGTTACATGCTA------- 161
                       **** *        *  *** ***   ** * *  *  *  ***   * * *       

consensus_1920#0      AATCGTGAAATTGAATCAT-ATTCCTTTACTGCTTCTGTAAAACCTTCGAGTTGTTGTTC 238
consensus_1920#1      AAGCAGGCAATCG--TCATGATGCAGCTACTAATTATGTAGATGCTGCTAATTGTTTTAA 219
                      ** *  * *** *  **** ** *   ****  ** **** *  ** * * ***** *  

consensus_1920#0      CTCGATATGTTCTATTAATGTCTTTATCAATTTGTATTCTCTAGAATCTTGGAATGCAG- 297
consensus_1920#1      ---AAAATCTAATATAAATGAGGCAATCAGTT-GTCTATTAAAGGCAATTGAAATTTACA 275
                          * ** *  *** ****     **** ** ** *  *  **    *** ***  *  

consensus_1920#0      --GATATTG-----TTCTTGATAACGTTCAATTGCATGTTGAGCATTTAATACATCAACA 350
consensus_1920#1      CTGATATGGGTCGATTCACAATGGCAGCCAA--ACATCATCAAAGTATAGCTGAGATGTA 333
                        ***** *     ***   **  *   ***   ***  * *   * **    *     *

consensus_1920#0      CACAAATGGCATAGCGCCGCTCGGAAAAAATATTCCTTTGCACTA-TATTTCAATAAAGA 409
consensus_1920#1      TGAAAGTGAAGCTGTAGATCTTGAGAGAGCAGTTCATCATTATGAGCAAGCTGCTGATTA 393
                         ** **     *     ** *  * *    *** *    *  *  *      * *  *

consensus_1920#0      ACTTTCTAAAGATGCAGATGCAACCTGTTCGTAAATTTGAATAGCTTTTTCATAATTTTC 469
consensus_1920#1      TTTTCGTGGAGAAG-AGA-GCAATTCCTCTGCAAAT--AAATG--TCTTTTGAAAGTTGC 447
                        **  *  *** * *** ****    *  * ****   ***   * ***   ** ** *

consensus_1920#0      AAGTTGTGCAGCATACTGTGCAACTTTCAA----- 499
consensus_1920#1      ACAGTATGCTGCACAACTTGAAAATTATGAAAAAG 482
                      *   * *** *** *   ** ** **   *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)