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Apis mellifera
cluster # 1928 cluster # 1928       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1928#0 length = 385 sequences # 1  
 consensus_1928#1 length = 263 sequences # 1  
consensusID : consensus_1928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence 
                              [CGAGAGAAGAGGAAATTCTATTCGATTTTCCACCGAATCCGATAGAGTTTTAATTTCTCTCCTCGTGATTATTGTATGAATGTAAATCGATTATATCGCATAGCATATGCATTCGAAGGGTTGAAGTTGAATTTTATCGATACACGATCGACTCGCTCGTATTCGCTCGTTTTTATCGCGCGCGCGCGCGCGCACGCGCGTTCGTAAACCAGAGTATTTGAACGCGTAACAAGAGAGAATCGAAGCTCGTTCATTGAGGAACGTAAGAAGGAATCGGTCGAGGCTGCGTATTTTGCGTAGNGATCGTCTACCGTTGAACGGGGCAGTATCGTTTGTTCATTGGCGACGCGACGCACCGCCAGTGGCACACTTGTCGCTTGGAAAG]

[+] EMBL BI512882             [CGAGAGAAGAGGAAATTCTATTCGATTTTCCACCGAATCCGATAGAGTTTTAATTTCTCTCCTCGTGATTATTGTATGAATGTAAATCGATTATATCGCATAGCATATGCATTCGAAGGGTTGAAGTTGAATTTTATCGATACACGATCGACTCGCTCGTATTCGCTCGTTTTTATCGCGCGCGCGCGCGCGCACGCGCGTTCGTAAACCAGAGTATTTGAACGCGTAACAAGAGAGAATCGAAGCTCGTTCATTGAGGAACGTAAGAAGGAATCGGTCGAGGCTGCGTATTTTGCGTAGNGATCGTCTACCGTTGAACGGGGCAGTATCGTTTGTTCATTGGCGACGCGACGCACCGCCAGTGGCACACTTGTCGCTTGGAAAG]




>consensus_1928#0
CGAGAGAAGAGGAAATTCTATTCGATTTTCCACCGAATCCGATAGAGTTTTAATTTCTCT
CCTCGTGATTATTGTATGAATGTAAATCGATTATATCGCATAGCATATGCATTCGAAGGG
TTGAAGTTGAATTTTATCGATACACGATCGACTCGCTCGTATTCGCTCGTTTTTATCGCG
CGCGCGCGCGCGCACGCGCGTTCGTAAACCAGAGTATTTGAACGCGTAACAAGAGAGAAT
CGAAGCTCGTTCATTGAGGAACGTAAGAAGGAATCGGTCGAGGCTGCGTATTTTGCGTAG
NGATCGTCTACCGTTGAACGGGGCAGTATCGTTTGTTCATTGGCGACGCGACGCACCGCC
AGTGGCACACTTGTCGCTTGGAAAG

consensusID : consensus_1928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence 
                              [AGCCAAGGGGAAAGGTAGATGATCGTTTGGCCGCGTTAGGCTGCGTATTTTGCGTAGAGATCGTCTACCGTTGAACGGGGCAGTATCGTTTGTTCATTGGCGACGCGACGCACCGCCAGTGGCACACTTGTCGCTTGGAAAGGAGAATAGACTTTCTCCTTCTCGTCGTTCCTCGTACCACCGCCGCCTTTCGTCTCGTTCTTGTACGGGAAGAATTGCAATCAAAGAAAGATAACATTGACGACGACGACGACGACGACAAG]

[+] EMBL BI514894             [AGCCAAGGGGAAAGGTAGATGATCGTTTGGCCGCGTTAGGCTGCGTATTTTGCGTAGAGATCGTCTACCGTTGAACGGGGCAGTATCGTTTGTTCATTGGCGACGCGACGCACCGCCAGTGGCACACTTGTCGCTTGGAAAGGAGAATAGACTTTCTCCTTCTCGTCGTTCCTCGTACCACCGCCGCCTTTCGTCTCGTTCTTGTACGGGAAGAATTGCAATCAAAGAAAGATAACATTGACGACGACGACGACGACGACAAG]




>consensus_1928#1
AGCCAAGGGGAAAGGTAGATGATCGTTTGGCCGCGTTAGGCTGCGTATTTTGCGTAGAGA
TCGTCTACCGTTGAACGGGGCAGTATCGTTTGTTCATTGGCGACGCGACGCACCGCCAGT
GGCACACTTGTCGCTTGGAAAGGAGAATAGACTTTCTCCTTCTCGTCGTTCCTCGTACCA
CCGCCGCCTTTCGTCTCGTTCTTGTACGGGAAGAATTGCAATCAAAGAAAGATAACATTG
ACGACGACGACGACGACGACAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1928#0      CGAGAGAAGAGGAAATTCTATTCGATTTTCCACCGAATCCGATAGAGTTTTAATTTCTCT 60
consensus_1928#1      --AGCCAAGGGGAAAGGTAGATGATCGTTTGGCCGCGTTAGGCTGCGTATTTTGCGTAGA 58
                        **  *** *****      *     **   ***  *  *   * ** **         

consensus_1928#0      CCTCGTG-ATTATTGTATGAATGTAAATCGATTAT--ATCGCATAGCATATGCATTCGAA 117
consensus_1928#1      GATCGTCTACCGTTGAACGGGGCAGTATCGTTTGTTCATTGGCGACGCGACGCACCGCCA 118
                        ****  *   *** * *       **** ** *  ** *   *    * ***     *

consensus_1928#0      GGGTTGAAGTTGAATTTTATCGATACACGATCGACTCGCTCGTATTCGCTCGTTTTTATC 177
consensus_1928#1      GTGGCACACTTGTCGCTTGG-AAAGGAGAATAGACTTTCTCCTTCTCG-TCGTTCCTCGT 176
                      * *    * ***    **    *   *  ** ****  *** *  *** *****  *   

consensus_1928#0      GCGCGCGCGCGCGCGCACGCGCGTTCGTAAACCAGAGTATTTGAACGCGTAACAAGAGAG 237
consensus_1928#1      ACCACCGC-CGCCTTTCGTCTCGTTCTTGTACGGGAAGAATTGCAATCAAAGAAAGATAA 235
                       *   *** ***       * ***** *  **  **  * *** *  *  *  **** * 

consensus_1928#0      AATCGAAGCTCGTTCATTGAGGAACGTAAGAAGGAATCGGTCGAGGCTGCGTATTTTGCG 297
consensus_1928#1      CATTGACGACGA--CGACGACGACGACAAG------------------------------ 263
                       ** ** *      *   ** **    ***                              

consensus_1928#0      TAGNGATCGTCTACCGTTGAACGGGGCAGTATCGTTTGTTCATTGGCGACGCGACGCACC 357
consensus_1928#1      ------------------------------------------------------------
                                                                                  

consensus_1928#0      GCCAGTGGCACACTTGTCGCTTGGAAAG 385
consensus_1928#1      ----------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)