cluster # 1942

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Apis mellifera
cluster # 1942 cluster # 1942 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1942#0 length = 489 sequences # 1

consensus_1942#1 length = 419 sequences # 1

consensusID : consensus_1942#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [ACGCATTGATGGGAAAAGTAGAGTATCGACGTTACCGATGATCGATCAAATCGAAGCCACGAGATGAAAGATAGAGAAAGAGAATGGGAAGAACGATGAAGCGTATGAAGAAAAAAAAAAAAGAAGAAGAAGAAGAAAAGAAAAGAAAGGAAAGGAAAGGAAAGGAAAAAGAGAATAACTAAATAATTCGTTGCTCACGAATGCTCATTCATTGTTTTTATCCAGCGCGGTGTTTACGAGTAAGTCGTAAGCCGGACGCTTTAGTGAGAGTAAATTTAATCGTTCGAGTGTACTTTTCAATTATCACGCTCAAAACGTTCAAGCATTTAAGCTGTTCACGAGATTCAGGGTCTTAGAGATTAATTAGACGAGATGGTAGAAAAAATTGTCGAGTCGTTCGTAATAAAAATTAAAGAGATTAAGAGAAATTAAAGGAGAAAAAAAATGAAAATGTTAATTCGTAAAAATAAAAACAAGATGTAAAAAAAA]

[+] EMBL BI504568             [ACGCATTGATGGGAAAAGTAGAGTATCGACGTTACCGATGATCGATCAAATCGAAGCCACGAGATGAAAGATAGAGAAAGAGAATGGGAAGAACGATGAAGCGTATGAAGAAAAAAAAAAAAGAAGAAGAAGAAGAAAAGAAAAGAAAGGAAAGGAAAGGAAAGGAAAAAGAGAATAACTAAATAATTCGTTGCTCACGAATGCTCATTCATTGTTTTTATCCAGCGCGGTGTTTACGAGTAAGTCGTAAGCCGGACGCTTTAGTGAGAGTAAATTTAATCGTTCGAGTGTACTTTTCAATTATCACGCTCAAAACGTTCAAGCATTTAAGCTGTTCACGAGATTCAGGGTCTTAGAGATTAATTAGACGAGATGGTAGAAAAAATTGTCGAGTCGTTCGTAATAAAAATTAAAGAGATTAAGAGAAATTAAAGGAGAAAAAAAATGAAAATGTTAATTCGTAAAAATAAAAACAAGATGTAAAAAAAA]




>consensus_1942#0
ACGCATTGATGGGAAAAGTAGAGTATCGACGTTACCGATGATCGATCAAATCGAAGCCAC
GAGATGAAAGATAGAGAAAGAGAATGGGAAGAACGATGAAGCGTATGAAGAAAAAAAAAA
AAGAAGAAGAAGAAGAAAAGAAAAGAAAGGAAAGGAAAGGAAAGGAAAAAGAGAATAACT
AAATAATTCGTTGCTCACGAATGCTCATTCATTGTTTTTATCCAGCGCGGTGTTTACGAG
TAAGTCGTAAGCCGGACGCTTTAGTGAGAGTAAATTTAATCGTTCGAGTGTACTTTTCAA
TTATCACGCTCAAAACGTTCAAGCATTTAAGCTGTTCACGAGATTCAGGGTCTTAGAGAT
TAATTAGACGAGATGGTAGAAAAAATTGTCGAGTCGTTCGTAATAAAAATTAAAGAGATT
AAGAGAAATTAAAGGAGAAAAAAAATGAAAATGTTAATTCGTAAAAATAAAAACAAGATG
TAAAAAAAA

consensusID : consensus_1942#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [AGAAATATACACGCTCAGACACCGGGAAAGGGGAGTGTTTTCGTTCACGTTTCACGGGGATCTTTTCGTTTGATCGTTTTGTTTCCAGGGATACGTGTTAAGAACATTTTACACGCGTTACACTTGCTACGCTACGCATTGATGGGAAAAGTAGAGTATCGACGTTACCGATGATCGATCAAATCGAAGCCACGAGATGAAAGATAGAGAAAGAGAATGGGAAATGACGAGAATAAAAAAAAGAAGGAGAGAACGACGTTTAAATTCAGAGGGATTGTGACGATTATTACCCGTATTTATTCTTCGTTTTAACAATCGTGTCGATGATTAATTATGCTGATATCGCAGGGTGATTTTAATTGTACGTGCTGCCGAAATGTTTCCACCTTCTTGAACTCGATGAAAGAGAAACGAGAGAT]

[+] EMBL BI516630             [AGAAATATACACGCTCAGACACCGGGAAAGGGGAGTGTTTTCGTTCACGTTTCACGGGGATCTTTTCGTTTGATCGTTTTGTTTCCAGGGATACGTGTTAAGAACATTTTACACGCGTTACACTTGCTACGCTACGCATTGATGGGAAAAGTAGAGTATCGACGTTACCGATGATCGATCAAATCGAAGCCACGAGATGAAAGATAGAGAAAGAGAATGGGAAATGACGAGAATAAAAAAAAGAAGGAGAGAACGACGTTTAAATTCAGAGGGATTGTGACGATTATTACCCGTATTTATTCTTCGTTTTAACAATCGTGTCGATGATTAATTATGCTGATATCGCAGGGTGATTTTAATTGTACGTGCTGCCGAAATGTTTCCACCTTCTTGAACTCGATGAAAGAGAAACGAGAGAT]




>consensus_1942#1
AGAAATATACACGCTCAGACACCGGGAAAGGGGAGTGTTTTCGTTCACGTTTCACGGGGA
TCTTTTCGTTTGATCGTTTTGTTTCCAGGGATACGTGTTAAGAACATTTTACACGCGTTA
CACTTGCTACGCTACGCATTGATGGGAAAAGTAGAGTATCGACGTTACCGATGATCGATC
AAATCGAAGCCACGAGATGAAAGATAGAGAAAGAGAATGGGAAATGACGAGAATAAAAAA
AAGAAGGAGAGAACGACGTTTAAATTCAGAGGGATTGTGACGATTATTACCCGTATTTAT
TCTTCGTTTTAACAATCGTGTCGATGATTAATTATGCTGATATCGCAGGGTGATTTTAAT
TGTACGTGCTGCCGAAATGTTTCCACCTTCTTGAACTCGATGAAAGAGAAACGAGAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1942#0      ----------ACGCATTGATG--GGAAAAGTAGAGTATCGACGTTACCGATGATCGATCA 48
consensus_1942#1      AGAAATATACACGCTCAGACACCGGGAAAGGGGAGTGTTTTCGTTCACGTTTCACGGGGA 60
                                ****   **    ** ****  **** *   ****  ** *   **   *

consensus_1942#0      AATCGAAGCC--ACGAGATGAAAGATAGAGAAAGAGAATGGGAAGAACGATGAAGCGTAT 106
consensus_1942#1      TCTTTTCGTTTGATCGTTTTGTTTCCAGGGATACGTGTTAAGAACATTTTACACGCGTTA 120
                        *    *    *     *       ** ** *     *  *** *      * ****  

consensus_1942#0      GAAGAAAAAAAAAAAAGAAGAAGAAGAAGAAAAGAAAAGAAAGGAAAGGAAAGGAAAGGA 166
consensus_1942#1      CACTTGCTACGCTACGCATTGATGGGAAAAGTAGAGTATCGACGTTACCGATGATCGATC 180
                       *      *    *   *   *   *** *  ***  *   * *  *   * *       

consensus_1942#0      AAAAGAGAATAACTAAATAATTCGTTGCTCACGAATGCTCATTCATTGTTTTTATCCAGC 226
consensus_1942#1      AAATCGAAGCCACGAGATGAAAGATAGAGAAAGAGAA-TGGGAAATGACGAGAATAAAAA 239
                      ***    *   ** * ** *    * *   * **    *     **       **  *  

consensus_1942#0      GCGGTGTTTACGAGTAAGTCGTAAGCCGGACGCTTTAGTGAGAGTAAATTTAATCGTTCG 286
consensus_1942#1      AAAGAAGGAGAGAACGACGTTTAAATTCAG------AGGGATTGTGACGATTATTACCCG 293
                         *       **   *    ***            ** **  ** *   * **    **

consensus_1942#0      AGTGTACTTTTCAATTATCACGCTCAAAACGTTCAAGCATTTAAGCTGTTCACGAGATTC 346
consensus_1942#1      TATTTATTCTTCG-TTTTAACAATCGTGTCGAT-GATTAATTATGCTGATATCG-----C 346
                        * ** * ***  ** * **  **    ** *  *  * *** **** *  **     *

consensus_1942#0      AGGGTCTTAGAGATTAATTAGACGAGATGGTAGAAAAAATTGTCGAGTCGTTCGTAATAA 406
consensus_1942#1      AGGGT----GATTTTAATTGTACGTGCTGCCGAAA-----TGTTTCCACCTTCTTGAACT 397
                      *****    **  ******  *** * **    **     ***     * *** * *   

consensus_1942#0      AAATTAAAGAGATTAAGAGAAATTAAAGGAGAAAAAAAATGAAAATGTTAATTCGTAAAA 466
consensus_1942#1      CGATGAAAGAGAA-ACGAGAGAT------------------------------------- 419
                        ** *******  * **** **                                     

consensus_1942#0      ATAAAAACAAGATGTAAAAAAAA 489
consensus_1942#1      -----------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)