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Apis mellifera
cluster # 1964 cluster # 1964       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1964#0 length = 534 sequences # 1  
 consensus_1964#1 length = 321 sequences # 1  
consensusID : consensus_1964#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence 
                              [GACCGGATCTAATCATGCTCACGCCGACTATGTTTCCTGTGCTCTCGTTCCTTCTCCTTCTTAACGACGTGAGCCAGAAGATCGAACGTTAAAAATTTGAAAAACCGTTTAAAAAATTGAAAATTAAAATTCAAGATCGTTTAAAGGGAAACAAAACAAGAGGAAACGAATCGGCCAGGAAAAGAAATATTAATCGATGATACTGCTCTCATTGTGCTCTTTGAGAATAAATTCTTGGAGGTAAAAACGAATCGTATGGAATAATCGAGAAAAATATTTGCATAATGATTTTATTAACATCTCCCTTGCGGAGAAACGTTTAATTTTGTAGATAAGAAGCTGAAATGATAAACGAGATAGTTAGAGATGGATGGAAAAAGTATTTATGTACGAATATTTGATTCAATGGTTAATTAATGAAACGTGATCAAGAAAGAAAGTGGGGCCAAGTATTTATCCGAGTACAATAATTCTTTTTATTTATTAAGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATAT]

[+] EMBL BI512969             [GACCGGATCTAATCATGCTCACGCCGACTATGTTTCCTGTGCTCTCGTTCCTTCTCCTTCTTAACGACGTGAGCCAGAAGATCGAACGTTAAAAATTTGAAAAACCGTTTAAAAAATTGAAAATTAAAATTCAAGATCGTTTAAAGGGAAACAAAACAAGAGGAAACGAATCGGCCAGGAAAAGAAATATTAATCGATGATACTGCTCTCATTGTGCTCTTTGAGAATAAATTCTTGGAGGTAAAAACGAATCGTATGGAATAATCGAGAAAAATATTTGCATAATGATTTTATTAACATCTCCCTTGCGGAGAAACGTTTAATTTTGTAGATAAGAAGCTGAAATGATAAACGAGATAGTTAGAGATGGATGGAAAAAGTATTTATGTACGAATATTTGATTCAATGGTTAATTAATGAAACGTGATCAAGAAAGAAAGTGGGGCCAAGTATTTATCCGAGTACAATAATTCTTTTTATTTATTAAGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATAT]




>consensus_1964#0
GACCGGATCTAATCATGCTCACGCCGACTATGTTTCCTGTGCTCTCGTTCCTTCTCCTTC
TTAACGACGTGAGCCAGAAGATCGAACGTTAAAAATTTGAAAAACCGTTTAAAAAATTGA
AAATTAAAATTCAAGATCGTTTAAAGGGAAACAAAACAAGAGGAAACGAATCGGCCAGGA
AAAGAAATATTAATCGATGATACTGCTCTCATTGTGCTCTTTGAGAATAAATTCTTGGAG
GTAAAAACGAATCGTATGGAATAATCGAGAAAAATATTTGCATAATGATTTTATTAACAT
CTCCCTTGCGGAGAAACGTTTAATTTTGTAGATAAGAAGCTGAAATGATAAACGAGATAG
TTAGAGATGGATGGAAAAAGTATTTATGTACGAATATTTGATTCAATGGTTAATTAATGA
AACGTGATCAAGAAAGAAAGTGGGGCCAAGTATTTATCCGAGTACAATAATTCTTTTTAT
TTATTAAGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATAT

consensusID : consensus_1964#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence 
                              [AGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATATTAATCATGCCTTTAAAGAGGATAGTCCCTGCTTCCTATGTTTCATCGCAAAATAATTCACCTAAACTATTCTGAAGCATGAGCTGAAAGTATAGCTAGAAATGTAGACTGGTTATTGAATGCCGTCGCCATGGTGGAGCTGGTGTGTAGCAACTCCCTAAGTCCAGGAACCTATTCATGTGTTGAAAAATTCGCAAAAGGAATCGAGGAAGCAAGAAAAGAAATCGCACAGAAATTCAACATCTGACTATATAACTAATTAGAAGAAAAAAAA]

[+] EMBL BI504489             [AGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATATTAATCATGCCTTTAAAGAGGATAGTCCCTGCTTCCTATGTTTCATCGCAAAATAATTCACCTAAACTATTCTGAAGCATGAGCTGAAAGTATAGCTAGAAATGTAGACTGGTTATTGAATGCCGTCGCCATGGTGGAGCTGGTGTGTAGCAACTCCCTAAGTCCAGGAACCTATTCATGTGTTGAAAAATTCGCAAAAGGAATCGAGGAAGCAAGAAAAGAAATCGCACAGAAATTCAACATCTGACTATATAACTAATTAGAAGAAAAAAAA]




>consensus_1964#1
AGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATATTAATCATGCCTT
TAAAGAGGATAGTCCCTGCTTCCTATGTTTCATCGCAAAATAATTCACCTAAACTATTCT
GAAGCATGAGCTGAAAGTATAGCTAGAAATGTAGACTGGTTATTGAATGCCGTCGCCATG
GTGGAGCTGGTGTGTAGCAACTCCCTAAGTCCAGGAACCTATTCATGTGTTGAAAAATTC
GCAAAAGGAATCGAGGAAGCAAGAAAAGAAATCGCACAGAAATTCAACATCTGACTATAT
AACTAATTAGAAGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1964#0      GACCGGATCTAATCATGCTCACGCCGACTATGTTTCCTGTGCTCTCGTTCCTTCTCCTTC 60
consensus_1964#1      ------------------------------------------------------------
                                                                                  

consensus_1964#0      TTAACGACGTGAGCCAGAAGATCGAACGTTAAAAATTTGAAAAACCGTTTAAAAAATTGA 120
consensus_1964#1      ------------------------------------------------------------
                                                                                  

consensus_1964#0      AAATTAAAATTCAAGATCGTTTAAAGGGAAACAAAACAAGAGGAAACGAATCGGCCAGGA 180
consensus_1964#1      ------------------------------AGAGAACTCGAGTAAAATATTCTTTAAATA 30
                                                    * * ***  *** ***  * **    *  *

consensus_1964#0      AAAGAAATATTAATCGATGATACTGCTCTCATTGTGCTCTTTGAGAATAAATTCTTGGAG 240
consensus_1964#1      AAAAAGATATTAG-----GATATTA-----ATCATGCCTTTAAAGAGGATAGTCCC---- 76
                      *** * ******      **** *      **  ***  **  ***  * * **      

consensus_1964#0      GTAAAAACGAATCGTATGGAATAATCGAGAAAAATATTTGCATAATGATTTTATTAACAT 300
consensus_1964#1      -------TGCTTCCTATGTT-TCATCGCAAAATA-ATTCACCTAAACTATTCTGAAGCAT 127
                              *  ** ****   * ****  *** * ***  * ***    **    * ***

consensus_1964#0      CTCCCTTGCGGAGAAACGTTTAATTTTGTAGATAAGAAGCTGAAATGATAAACGAGATAG 360
consensus_1964#1      GAGC----TGAAAGTATAGCTAGAAATGTAGACTGGTTATTGAAT--GCCGTCGCCATGG 181
                         *     * *   *    **    ******   *    ****        **  ** *

consensus_1964#0      TTAGAGATGG-ATGGAAAAAGTATTTATGTACGAATATTTGATTCAATGGTTAATTAATG 419
consensus_1964#1      T-GGAGCTGGTGTGTAGCAACTCCCTAAGTCCAGGAACCT-ATTCATGTGTTGAAAAATT 239
                      *  *** ***  ** *  ** *   ** ** *    *  * *****   *** *  *** 

consensus_1964#0      ---AAACGTGATCAAGAAAGAAAGTGGGGCCAAGTATTTATCCGAGTACAATAATTCTTT 476
consensus_1964#1      CGCAAAAGGAATCGAGGAAGCAAGAAAAG--AAAT-CGCACAGAAATTCAACATCTGACT 296
                         *** *  *** ** *** ***    *  ** *    *    * * *** *  *   *

consensus_1964#0      TTATTTATTAAGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATAT 534
consensus_1964#1      ATATAACTAATTAGAAGAAAAAAAA--------------------------------- 321
                       ***   * *  ****    *  **


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)