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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[GTCCAAGTTTTAGCAAAAACTGTTTGATAATAAGCGTTTCGAAATGCGAATACAGTTTGCCAAAGTAACTAAATAAGTCTTTTAAGCTAGTGTTTGTCGAAACAATTGGGTCTTTCAAGCTTGCTGAAATAATTCAGTGGTATGTAGTGGTGAACGAATATATATGCAAAAATTATCCTAGTTTTATCCAGTTGAACTTTATCTTTCGATATTACGTTTAATAAAATTATATGTTTATCGCCATGTTTATAACATTATTCAACTTCAAGTCGTATACACAAATGGTTAAAAAAAATTAGATCCTTCCTAGGACAAATTCCAAAATTCATTTTTTAATTCAAACTTTCCAAACTCCAAAATTAACAAATCCTCGTATATAGAAACGCAGCCAATTTCCAACTTTCGTTACATATTATATACCTTACACGATACCAACCTTCCTACGATTATTCTTCCCAGACCAGGGACCAACTGCGACGTTCCCTCGTTACCGTCAACAAGCTTCCCAACTTTCAACTTCCCCTGTACTCTCAAAACTACTCGAAACAATAACATTCGTCGTGGAAATTAGCACGT]
[+] EMBL BI510294 [GTCCAAGTTTTAGCAAAAACTGTTTGATAATAAGCGTTTCGAAATGCGAATACAGTTTGCCAAAGTAACTAAATAAGTCTTTTAAGCTAGTGTTTGTCGAAACAATTGGGTCTTTCAAGCTTGCTGAAATAATTCAGTGGTATGTAGTGGTGAACGAATATATATGCAAAAATTATCCTAGTTTTATCCAGTTGAACTTTATCTTTCGATATTACGTTTAATAAAATTATATGTTTATCGCCATGTTTATAACATTATTCAACTTCAAGTCGTATACACAAATGGTTAAAAAAAATTAGATCCTTCCTAGGACAAATTCCAAAATTCATTTTTTAATTCAAACTTTCCAAACTCCAAAATTAACAAATCCTCGTATATAGAAACGCAGCCAATTTCCAACTTTCGTTACATATTATATACCTTACACGATACCAACCTTCCTACGATTATTCTTCCCAGACCAGGGACCAACTGCGACGTTCCCTCGTTACCGTCAACAAGCTTCCCAACTTTCAACTTCCCCTGTACTCTCAAAACTACTCGAAACAATAACATTCGTCGTGGAAATTAGCACGT]
consensusID : consensus_2029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence
[AACTACTCGAAACAATAACATTCGTCGTGGAAATTAGCACGTCTACACAAACCACCCTGCAATACCACAAGTGATCAATCGAGTGGATTCGAGGCGACTCGTACACATATATATATATATATACATATATCGTGGATGTTCGATTCGTTCGTTGTGAATGAAAAGGGGAGGGAAAGAGAGAAATTCGAAACAATGAATATGAAAAGAAGAAGAGAGAAAGAAAGAAAGAAAGAAATCGGCGCGACTGTCAGACTGAAAGTTTTGTGATTTTGCATGGCATGTGTACATAGGATGAAACCGAGAAAAAGAGGAAATGAAGGAAACAAAAGAGCCTCTATGTGTAGATTCAACGTGTAGGTGAGAAAGGTTTAAAAAGAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI504314 [AACTACTCGAAACAATAACATTCGTCGTGGAAATTAGCACGTCTACACAAACCACCCTGCAATACCACAAGTGATCAATCGAGTGGATTCGAGGCGACTCGTACACATATATATATATATATACATATATCGTGGATGTTCGATTCGTTCGTTGTGAATGAAAAGGGGAGGGAAAGAGAGAAATTCGAAACAATGAATATGAAAAGAAGAAGAGAGAAAGAAAGAAAGAAAGAAATCGGCGCGACTGTCAGACTGAAAGTTTTGTGATTTTGCATGGCATGTGTACATAGGATGAAACCGAGAAAAAGAGGAAATGAAGGAAACAAAAGAGCCTCTATGTGTAGATTCAACGTGTAGGTGAGAAAGGTTTAAAAAGAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2029#0 GTCCAAGTTTTAGCAAAAACTGTTTGATAATAAGCGTTTCGAAATGCGAATACAGTTTGC 60
consensus_2029#1 ------------------------------------------------------------
consensus_2029#0 CAAAGTAACTAAATAAGTCTTTTAAGCTAGTGTTTGTCGAAACAATTGGGTCTTTCAAGC 120
consensus_2029#1 ---------------------------------------------------------AAC 3
* *
consensus_2029#0 TTGCTGAAATAATTCAGTGGTATGTAGTGGTGAACGAATATATATGCAAAAATTATCCTA 180
consensus_2029#1 TACTCGAAACAAT---AACATTCGTCGTGG-AAATTAGCACGTCTACACAAACCACCCTG 59
* **** *** * ** **** ** * * * * ** *** * ***
consensus_2029#0 GTTTTATCCAGTTGAACTTTATCTTTCGATATTACGTTTAATAAAATTATATGTTTATCG 240
consensus_2029#1 CAATACCACAAGTGA--TCAATCGAGTGGATTCGAGGCGACTCGTAC-ACATATATATAT 116
* ** *** * *** * * * * * * * ** * ***
consensus_2029#0 CCATGTTTATAACATTATTCAACTTCAAGTCGTATACACAAATGGTTAAAAAAAATTAGA 300
consensus_2029#1 ATATATACATA-TATCGTGGATGTTCGATTCGTTCGTTGTGAATGAAAAGGGGAGGGAAA 175
** * *** ** * * *** * **** * * ** * * *
consensus_2029#0 TCCTTCCTAGGACAAATTCCAAA-ATTCATTTTTTAATTCAAACTTTCCAAACTCCAAAA 359
consensus_2029#1 --------GAGAGAAATTCGAAACAATGAATATGAAAAGAAGAAGAGAGAAAGAAAGAAA 227
** ****** *** * * * * * ** * * *** ***
consensus_2029#0 TTAACAAATCCTCGTATATAGAAACGCAGCCAATTTCCAACTTTCGTTACATATTATATA 419
consensus_2029#1 GAAAGAAATCGGCGCG-ACTGTCAGACTGAAAGTTTTGTGATTTTGC-ATGGCATGTGTA 285
** ***** ** * * * * * * *** *** * * * * **
consensus_2029#0 CCTTACACGATACCAACCTTCCTACGATTATTCTTCCCAGACCAGGGACCAACTGCGACG 479
consensus_2029#1 CATAGGATGAAACCGAGAAAAAGAGGAA-ATGAAGGAAACAAAAGAGCCTCTATGTGTAG 344
* * * ** *** * * ** ** * * ** * * ** * *
consensus_2029#0 TTCCCTCGTTACCGTCAACAAGCTTCCCAACTTTCAACTTCCCCTGTACTCTCAAAACTA 539
consensus_2029#1 ATTCAACGTGTAGGTGAGAAAGGTT--TAAAAAGAAACAAAAAAAAAAAAAAAAAAAAAA 402
* * *** ** * *** ** ** *** * **** *
consensus_2029#0 CTCGAAACAATAACATTCGTCGTGGAAATTAGCACGT 576
consensus_2029#1 AAAAAAAAAAAAA------------------------ 415
*** ** **
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |