cluster # 2036

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Apis mellifera
cluster # 2036 cluster # 2036 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2036#0 length = 658 sequences # 1

consensus_2036#1 length = 440 sequences # 1

consensusID : consensus_2036#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [ACTCTGGAGACGTGATGGCCCAGGAATGTAAAAAATAATCCCACGAAGAAACAAACGGCAGAAATAAACTTGAAAACACCCTCGGATAAAATGTCGCATGATACAGGATCGATCGTGGGATTACAGCCGTACGAAACTATGGGGACATAGGCAGCAGAATGATTCCCATAACTAGCCACTGCGACGTAAACCGAGCCAACTCCGATATACGCGCTAAATATTCGTCTCATCGGTGAGGAAACAATGGAGGCCGTTGCCTTCGCTCCGTTCCCCTTGATATCGTCCACAGTCAGCATGTTTACGATACCCGTGAAATAAGTTTCGGCAGTGAGGTCCCGCTCGGACAGGTACATCTGATACACCTGGACCTCCACCGGCTCCTTTTCGCAAGTGCGGCGCATCGAGTTGAACGGTAACGAGGCTGGTTGCACGTCCACGATCACCATCGCGTCGCGTGTCTGCATTCTCGCGTAAGGCGCGATCTCGGTATTGAACTCCATGTTGCATCCACCCGGTACGGGTGCTTTATTGTTGTAAGCAATAACAACGAGCAGAGCCTTAACATCGTGAACATTATCATTTTTCACGAAAAATTGTGTCGTATTAGTGGTTAGCTTAGAGAGAAGACCAATGTTTGATCCAAATACGCTTCTATTCG]

[+] EMBL BQ103801             [ACTCTGGAGACGTGATGGCCCAGGAATGTAAAAAATAATCCCACGAAGAAACAAACGGCAGAAATAAACTTGAAAACACCCTCGGATAAAATGTCGCATGATACAGGATCGATCGTGGGATTACAGCCGTACGAAACTATGGGGACATAGGCAGCAGAATGATTCCCATAACTAGCCACTGCGACGTAAACCGAGCCAACTCCGATATACGCGCTAAATATTCGTCTCATCGGTGAGGAAACAATGGAGGCCGTTGCCTTCGCTCCGTTCCCCTTGATATCGTCCACAGTCAGCATGTTTACGATACCCGTGAAATAAGTTTCGGCAGTGAGGTCCCGCTCGGACAGGTACATCTGATACACCTGGACCTCCACCGGCTCCTTTTCGCAAGTGCGGCGCATCGAGTTGAACGGTAACGAGGCTGGTTGCACGTCCACGATCACCATCGCGTCGCGTGTCTGCATTCTCGCGTAAGGCGCGATCTCGGTATTGAACTCCATGTTGCATCCACCCGGTACGGGTGCTTTATTGTTGTAAGCAATAACAACGAGCAGAGCCTTAACATCGTGAACATTATCATTTTTCACGAAAAATTGTGTCGTATTAGTGGTTAGCTTAGAGAGAAGACCAATGTTTGATCCAAATACGCTTCTATTCG]




>consensus_2036#0
ACTCTGGAGACGTGATGGCCCAGGAATGTAAAAAATAATCCCACGAAGAAACAAACGGCA
GAAATAAACTTGAAAACACCCTCGGATAAAATGTCGCATGATACAGGATCGATCGTGGGA
TTACAGCCGTACGAAACTATGGGGACATAGGCAGCAGAATGATTCCCATAACTAGCCACT
GCGACGTAAACCGAGCCAACTCCGATATACGCGCTAAATATTCGTCTCATCGGTGAGGAA
ACAATGGAGGCCGTTGCCTTCGCTCCGTTCCCCTTGATATCGTCCACAGTCAGCATGTTT
ACGATACCCGTGAAATAAGTTTCGGCAGTGAGGTCCCGCTCGGACAGGTACATCTGATAC
ACCTGGACCTCCACCGGCTCCTTTTCGCAAGTGCGGCGCATCGAGTTGAACGGTAACGAG
GCTGGTTGCACGTCCACGATCACCATCGCGTCGCGTGTCTGCATTCTCGCGTAAGGCGCG
ATCTCGGTATTGAACTCCATGTTGCATCCACCCGGTACGGGTGCTTTATTGTTGTAAGCA
ATAACAACGAGCAGAGCCTTAACATCGTGAACATTATCATTTTTCACGAAAAATTGTGTC
GTATTAGTGGTTAGCTTAGAGAGAAGACCAATGTTTGATCCAAATACGCTTCTATTCG

consensusID : consensus_2036#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [ACTCGGCTTTGCGGCAATTTAATCGAATAAGTGTGTCACGCGGTTCATAACTCCGATCGACATGAGCCGCAATTTTGTCGGAGAGTTGCTGATCTTTCTGTTATTCTTCATTCACAGTTTAGATACGAAAGTATTATCAAATACATTGTCTCTCGGTGATGGAAGTGTATTTGAAATGAAGTTAACTAATCTTCATGACACTACACCATACATGAAACAAGTATCTATTGCAGCAAGTAGCAAAGCAATCTTTAATGTAACAAACGTTTCCTCCAACGCTTCATTTATTATTTTTCAAATTCATATTTATCAACATAATGTTACATTGTCTTTTGATAAAGATTGTCTTAATAAAGTTTCGAATAGAAGCGTATTTGGATCAAACATTGGTCTTCTCTCTAAGCTAACCACTAATACGACACAATTTTTCGTGAAAAATG]

[+] EMBL BI514447             [ACTCGGCTTTGCGGCAATTTAATCGAATAAGTGTGTCACGCGGTTCATAACTCCGATCGACATGAGCCGCAATTTTGTCGGAGAGTTGCTGATCTTTCTGTTATTCTTCATTCACAGTTTAGATACGAAAGTATTATCAAATACATTGTCTCTCGGTGATGGAAGTGTATTTGAAATGAAGTTAACTAATCTTCATGACACTACACCATACATGAAACAAGTATCTATTGCAGCAAGTAGCAAAGCAATCTTTAATGTAACAAACGTTTCCTCCAACGCTTCATTTATTATTTTTCAAATTCATATTTATCAACATAATGTTACATTGTCTTTTGATAAAGATTGTCTTAATAAAGTTTCGAATAGAAGCGTATTTGGATCAAACATTGGTCTTCTCTCTAAGCTAACCACTAATACGACACAATTTTTCGTGAAAAATG]




>consensus_2036#1
ACTCGGCTTTGCGGCAATTTAATCGAATAAGTGTGTCACGCGGTTCATAACTCCGATCGA
CATGAGCCGCAATTTTGTCGGAGAGTTGCTGATCTTTCTGTTATTCTTCATTCACAGTTT
AGATACGAAAGTATTATCAAATACATTGTCTCTCGGTGATGGAAGTGTATTTGAAATGAA
GTTAACTAATCTTCATGACACTACACCATACATGAAACAAGTATCTATTGCAGCAAGTAG
CAAAGCAATCTTTAATGTAACAAACGTTTCCTCCAACGCTTCATTTATTATTTTTCAAAT
TCATATTTATCAACATAATGTTACATTGTCTTTTGATAAAGATTGTCTTAATAAAGTTTC
GAATAGAAGCGTATTTGGATCAAACATTGGTCTTCTCTCTAAGCTAACCACTAATACGAC
ACAATTTTTCGTGAAAAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2036#0      ACTCTGGAGACGTGATGGCCCAGGAATGTAAAAAATAATCCCACGAAGAAACAAACGGCA 60
consensus_2036#1      ------------------------------------------------------------
                                                                                  

consensus_2036#0      GAAATAAACTTGAAAACACCCTCGGATAAAATGTCGCATGATACAGGATCGATCGTGGGA 120
consensus_2036#1      ------------------------------------------------------------
                                                                                  

consensus_2036#0      TTACAGCCGTACGAAACTATGGGGACATAGGCAGCAGAATGATTCCCATAACTAGCCACT 180
consensus_2036#1      --------------------------------------------------ACTCGGCTTT 10
                                                                        *** * *  *

consensus_2036#0      GCGACGTAAACCGAGCCAACTCCGATATACGCGCTAAATA-TTCGTCTCATCGGTGAGGA 239
consensus_2036#1      GCGGC--------AATTTAATCGAATAAGTGTGTCACGCGGTTCATAACTCCGATC--GA 60
                      *** *        *    * **  ***   * *  *     *** *  *  ** *   **

consensus_2036#0      AACAATGGAGGCCGTTGCCTTCGCTCCGTTCCCCTTGATATCGTCCACAGTCAGCATGTT 299
consensus_2036#1      CATGAGCCGCAATTTTGTCGGAGAGTTGCTGATCTTTCTGTTATTCTTCATTCACA-GTT 119
                       *  *         *** *   *    * *   ***  * *  * *    *   ** ***

consensus_2036#0      TACGATACCCGTGAAATAAGTTTCGGCAGTGAGGTCCCGCTCGGACAGGTACATCTGATA 359
consensus_2036#1      TA-GATAC----GAAAGTATTATCA--AATACATTGTCTCTCGGTGATGGAAGTGTATTT 172
                      ** *****    ****  * * **   * *    *  * *****  * * *  * *  * 

consensus_2036#0      CACCTGGACCTCCACCGGCTCCTTTTCGCAAGTGCGGCGCATCGAGTTGAACGGTAACGA 419
consensus_2036#1      GAAATGAAGTTAACTAATCTTCATGACACTA-CACCATACATGAAACAAGTATCTATTGC 231
                       *  ** *  *       ** * *  * * *   *    ***  *         **  * 

consensus_2036#0      GGCTGGTTGCACGTCCACGATCACCATCGCGTCGCGTGTCTGCATTCTCGCGTAAGGCGC 479
consensus_2036#1      AGCAAGTAGCAAA---GCAATCTTTAATGTAACAAACGTTTCCTCCAACGCTTCATTTAT 288
                       **  ** ***      * ***   *  *   *    ** * *     *** * *     

consensus_2036#0      GATCTCGGTATTGAACTCCATGTTGCATCCACCCGGTACGGGTGCTTTATTGTTGTAAGC 539
consensus_2036#1      TATTT-----TTCAAATTCATATT-TATCAACATAATGTTA-CATTGTCTTTTGATAAAG 341
                       ** *     ** ** * *** **  *** **    *        * * ** *  ***  

consensus_2036#0      AATAACAACGAGCAGAGCCTTAACATCGTGAACATTATCATTTTTCACGAAAAATTGTGT 599
consensus_2036#1      ATTGTC--TTAATAAAGTTTCGA-ATAG-AAGCGT----ATTTGGATCAAACATTGGTCT 393
                      * *  *    *  * **  *  * ** *  * * *    ****    * ** * * ** *

consensus_2036#0      CGTATTAGTGGTTAGCTTAGAGAGAAGACCAATGTTTGATCCAAATACGCTTCTATTCG 658
consensus_2036#1      TCTCTCTAAGCTAACCACTAATACGACACAATTTTTCGTGAAAAATG------------ 440
                        * *    * * * *    * *  * ** * * ** *    ****

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)