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Apis mellifera
cluster # 2089 cluster # 2089       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2089#0 length = 475 sequences # 1  
 consensus_2089#1 length = 470 sequences # 1  
consensusID : consensus_2089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence 
                              [GGGAAAACAGCGAGCATGAGTTTGAGTGTTGTGTATCGTCCTTTCTTTTTTTTTTTTTTTCTGCGAACGATGGCGAATCGATCGATTCGATTGCGAATTACCAACAACAGATAATATAACTGTAATGTAATTATATTATGATGTACGATGTAACGGTANGATACCGACGNNNNCNNAATATACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGANNNCGAGCGAGGGGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATATATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGANNNCGATGATGACAATGATTACAATTACGATCATCACGCGGATGAGAGAGAGCGAGAGAGCAAAAGGGAGAGAGAAAGAGAGAGAGAAAGGGAGAGAAAGGGAGAGAGAAAGGGAAAGAGTGTGT]

[+] EMBL BI510921             [GGGAAAACAGCGAGCATGAGTTTGAGTGTTGTGTATCGTCCTTTCTTTTTTTTTTTTTTTCTGCGAACGATGGCGAATCGATCGATTCGATTGCGAATTACCAACAACAGATAATATAACTGTAATGTAATTATATTATGATGTACGATGTAACGGTANGATACCGACGNNNNCNNAATATACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGANNNCGAGCGAGGGGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATATATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGANNNCGATGATGACAATGATTACAATTACGATCATCACGCGGATGAGAGAGAGCGAGAGAGCAAAAGGGAGAGAGAAAGAGAGAGAGAAAGGGAGAGAAAGGGAGAGAGAAAGGGAAAGAGTGTGT]




>consensus_2089#0
GGGAAAACAGCGAGCATGAGTTTGAGTGTTGTGTATCGTCCTTTCTTTTTTTTTTTTTTT
CTGCGAACGATGGCGAATCGATCGATTCGATTGCGAATTACCAACAACAGATAATATAAC
TGTAATGTAATTATATTATGATGTACGATGTAACGGTANGATACCGACGNNNNCNNAATA
TACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGANNNCGAGCGAG
GGGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATA
TATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGANNNCGATGAT
GACAATGATTACAATTACGATCATCACGCGGATGAGAGAGAGCGAGAGAGCAAAAGGGAG
AGAGAAAGAGAGAGAGAAAGGGAGAGAAAGGGAGAGAGAAAGGGAAAGAGTGTGT

consensusID : consensus_2089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence 
                              [CGATCGATTCGATTGCGAATTACCAACAACAGATAATATAACTGTAATGTAATTATATTATGATGTACGATGTAACGGTATGATACCGACGGTACCGTAATATACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGAAGACGAGCGAGGTGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATATATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGACGACGATGATGACAATGATTACAATTACGATCATCACGCGGATGAGAGACTAACCGCGAAAGAGAATACGAACGAAAAGCATCGCGTGGAAAATGCGCTAATTATTACATTGGAAAAATATCGAGAAAAACATCATGTACGAAATACACATACACACACATATATACATATATACAAACACAAAGGAAGTAGGCATAT]

[+] EMBL BI516405             [CGATCGATTCGATTGCGAATTACCAACAACAGATAATATAACTGTAATGTAATTATATTATGATGTACGATGTAACGGTATGATACCGACGGTACCGTAATATACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGAAGACGAGCGAGGTGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATATATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGACGACGATGATGACAATGATTACAATTACGATCATCACGCGGATGAGAGACTAACCGCGAAAGAGAATACGAACGAAAAGCATCGCGTGGAAAATGCGCTAATTATTACATTGGAAAAATATCGAGAAAAACATCATGTACGAAATACACATACACACACATATATACATATATACAAACACAAAGGAAGTAGGCATAT]




>consensus_2089#1
CGATCGATTCGATTGCGAATTACCAACAACAGATAATATAACTGTAATGTAATTATATTA
TGATGTACGATGTAACGGTATGATACCGACGGTACCGTAATATACATATTATAAATACAA
TTTCATAGAATACGAAGGATCGTTATAGCGAAGACGAGCGAGGTGATTTTCTATTATTGC
TATTGATTATTAACATTACCATTATATATATATATACACATATATCTCGTCATTACGGTT
TCTTACGATGATCGCTGCGACGACGACGACGACGACGATGATGACAATGATTACAATTAC
GATCATCACGCGGATGAGAGACTAACCGCGAAAGAGAATACGAACGAAAAGCATCGCGTG
GAAAATGCGCTAATTATTACATTGGAAAAATATCGAGAAAAACATCATGTACGAAATACA
CATACACACACATATATACATATATACAAACACAAAGGAAGTAGGCATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2089#0      GGGAAAACAGCGAGCATGAGTTTGAGTGTTGTGTATCGTCCTTTCTTTTTTTTTTTTTTT 60
consensus_2089#1      ------------------------------------------------------------
                                                                                  

consensus_2089#0      CTGCGAACGATGGCGAATCGATCGATTCGATTGCGAATTACCAACAACAGATAATATAAC 120
consensus_2089#1      ------------------CGATCGATTCGATTGCGAATTACCAACAACAGATAATATAAC 42
                                        ******************************************

consensus_2089#0      TGTAATGTAATTATATTATGATGTACGATGTAACGGTANGATACCGACGNNNNCNNAATA 180
consensus_2089#1      TGTAATGTAATTATATTATGATGTACGATGTAACGGTATGATACCGACGGTACCGTAATA 102
                      ************************************** **********    *  ****

consensus_2089#0      TACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGANNNCGAGCGAG 240
consensus_2089#1      TACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGAAGACGAGCGAG 162
                      *************************************************   ********

consensus_2089#0      GGGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATA 300
consensus_2089#1      GTGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATA 222
                      * **********************************************************

consensus_2089#0      TATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGANNNCGATGAT 360
consensus_2089#1      TATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGACGACGATGAT 282
                      **************************************************   *******

consensus_2089#0      GACAATGATTACAATTACGATCATCACGCGGATGAGAGA--GAGCGAGAGAGCAAAAGGG 418
consensus_2089#1      GACAATGATTACAATTACGATCATCACGCGGATGAGAGACTAACCGCGAAAGAGAATACG 342
                      ***************************************   * ** ** **  **   *

consensus_2089#0      AGAGAGAAAGAGAGAG-AGAAAGGGAGAGAA----------AGGGAGAGAGAAAGGGAAA 467
consensus_2089#1      AACGAAAAGCATCGCGTGGAAAATGCGCTAATTATTACATTGGAAAAATATCGAGAAAAA 402
                      *  ** **  *  * *  ****  * *  **           *  * * *   **  ***

consensus_2089#0      GAGTGTGT---------------------------------------------------- 475
consensus_2089#1      CATCATGTACGAAATACACATACACACACATATATACATATATACAAACACAAAGGAAGT 462
                       *   ***                                                    

consensus_2089#0      --------
consensus_2089#1      AGGCATAT 470


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)