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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[AAAGCAAGTTTCCTTTTCTCTTCAAGCGTGAAAGATTTTTTCTTAATTAAATAGATTTTTTTTCGACGGGCGAATATCAAGCATTTTTTTTCAAAGGATTCAATCTCTTTCACTCAATGTTCTTTCAGATTCGAATGTCTTTGGTGATATTCTCGAAACCGAAAGTTCAACAGTTTCATAAAATTCGTGGAAATTTTATGGAACATCTGATAAATAGAATTATTGGTTAGAATAATTTGGAAAATTTAATCCGACGATGAAAATATTTCTTCGTTCCGGTTTCGATCGTGATCACTTTCCACAATGTTTACAAATGTTTCGTCGATGTTCTCTCGTAGAATTTCGTCGAATTGAATGTCGAAAAGGAACGATAGTCGAATAAATTTCGCCGTTTCGATGAACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTATATATGCTTGATTCGTATCGGTATTTCGTCCATTTATTGCACGTATGTACACAATTATTATACATCAACTTATATATGCGTTTGTTATAATTCTCCGTGAAAGGAAATTTTTTTTCCAAACGGAACATCGTAATCAATTAATCTCGACGAAATTAATCAANGAGATACAACTATCAAATATGCAATATATTATGCATGAAAGAT]
[+] EMBL BI504102 [AAAGCAAGTTTCCTTTTCTCTTCAAGCGTGAAAGATTTTTTCTTAATTAAATAGATTTTTTTTCGACGGGCGAATATCAAGCATTTTTTTTCAAAGGATTCAATCTCTTTCACTCAATGTTCTTTCAGATTCGAATGTCTTTGGTGATATTCTCGAAACCGAAAGTTCAACAGTTTCATAAAATTCGTGGAAATTTTATGGAACATCTGATAAATAGAATTATTGGTTAGAATAATTTGGAAAATTTAATCCGACGATGAAAATATTTCTTCGTTCCGGTTTCGATCGTGATCACTTTCCACAATGTTTACAAATGTTTCGTCGATGTTCTCTCGTAGAATTTCGTCGAATTGAATGTCGAAAAGGAACGATAGTCGAATAAATTTCGCCGTTTCGATGAACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTATATATGCTTGATTCGTATCGGTATTTCGTCCATTTATTGCACGTATGTACACAATTATTATACATCAACTTATATATGCGTTTGTTATAATTCTCCGTGAAAGGAAATTTTTTTTCCAAACGGAACATCGTAATCAATTAATCTCGACGAAATTAATCAANGAGATACAACTATCAAATATGCAATATATTATGCATGAAAGAT]
consensusID : consensus_2107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[ATTCTCCGTGAAAGGAAATTTTTTTTCCAAACGGAACATCGTAATCAATTAATCTCGACGAAATTAATCAAGGAGATACAACTATCAAATATACAATATATTATGCATGAAAGATAAATTAAAGATATACAATTGGATTATAGAGAAATCGAGCTCGTATACGTATACGAAGAAAAGCGTAAAAGGACATTGTGAGTGAAACTTTGAATTGAGAAAGAGATACTCGATCAATTAAAATTTAGAAATCACGAAAAAGATTTTATTTTAAAATTATATGTACAATAATGCCCACACATATTTTATTTTCTGACGAATTGAGGTTCTAAATATTAGATAACTCGATAACGTTCAATAATATTCGAATCGTAATCACAGTGCAATACTTTATCGCAGTTAAAAAAATTATAAAAATGTACATTTGGACATTTGCCTGTTCCATTGCTTATTAAATTTTGGAAATCTTTGAAACGAGACTGACATGAAAAACTTTTTCTACGATCTGAAATAAAAATTTGTAAGAAAAATTTGTCGAAAGAGGGCATCACTGTATCGATT]
[-] EMBL BI507289 [ATTCTCCGTGAAAGGAAATTTTTTTTCCAAACGGAACATCGTAATCAATTAATCTCGACGAAATTAATCAAGGAGATACAACTATCAAATATACAATATATTATGCATGAAAGATAAATTAAAGATATACAATTGGATTATAGAGAAATCGAGCTCGTATACGTATACGAAGAAAAGCGTAAAAGGACATTGTGAGTGAAACTTTGAATTGAGAAAGAGATACTCGATCAATTAAAATTTAGAAATCACGAAAAAGATTTTATTTTAAAATTATATGTACAATAATGCCCACACATATTTTATTTTCTGACGAATTGAGGTTCTAAATATTAGATAACTCGATAACGTTCAATAATATTCGAATCGTAATCACAGTGCAATACTTTATCGCAGTTAAAAAAATTATAAAAATGTACATTTGGACATTTGCCTGTTCCATTGCTTATTAAATTTTGGAAATCTTTGAAACGAGACTGACATGAAAAACTTTTTCTACGATCTGAAATAAAAATTTGTAAGAAAAATTTGTCGAAAGAGGGCATCACTGTATCGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2107#0 AAAGCAAGTTTCCTTTTCTCTTCAAGCGTGAAAGATTTTTTCTTAATTAAATAGATTTTT 60
consensus_2107#1 ------------------------------------------------------------
consensus_2107#0 TTTCGACGGGCGAATATCAAGCATTTTTTTTCAAAGGATTCAATCTCTTTCACTCAATGT 120
consensus_2107#1 ----------------------ATTCTCCGTGAAAGGA---AATTTTTTTT-CCAAACGG 34
*** * * ****** *** * *** * ** *
consensus_2107#0 TCTTTCAGATTCGAATGTCTTTGGTGATATTCTCGAAACCGAAAGTTCAACAGTTT--CA 178
consensus_2107#1 AACATCGTAATCAATTAATCTCGACGAAATTAATCAA---GGAGATACAACTATCAAATA 91
** * ** * * * * ** *** ** * * * **** * *
consensus_2107#0 TAAAATTCGTGGAAATTTTATGGAACATCTGATAAATAGAATTATTGGTTAGAATAATTT 238
consensus_2107#1 TACAATATATTATGCATGAAAGATAAATTAAAGATATACAATTGGATTATAGAGAAATCG 151
** *** * * * * * ** * * *** **** **** ***
consensus_2107#0 GGAAAATTTAATCCGACGATGAAAA---TATTTCTTCGTTCCGGTTTCGATCGTGATCAC 295
consensus_2107#1 AGCTCGTATACGTATACGAAGAAAAGCGTAAAAGGACATTGTGAGTGAAACTTTGAATTG 211
* * ** **** ***** ** * ** * * * ***
consensus_2107#0 TTTCCACAATGTTT-ACAAATGTTTCGTCGATGTTCTCTCGTAGAATTTCGTCGAATTGA 354
consensus_2107#1 AGAAAGAGATACTCGATCAATTAAAATTTAGAAATCACGAAAAAGATTTTATT---TTAA 268
** * * *** * ** * * **** * ** *
consensus_2107#0 ATGTCGAAAAGGAACGATAGTCGAATAAATTTCGCCGTTTCGATGAACATCTCTCTCTCT 414
consensus_2107#1 AATTATATGTACAATAATGCCCACACATATTTTATT-TTCTGACGAATTGAGGTTCTAAA 327
* * * ** ** * * * **** ** ** *** *
consensus_2107#0 CTCTCTCTCTCTCTCTCTCTCGTATATATGCTTGATTCGTATCGGTATTTCGTCCATTTA 474
consensus_2107#1 TATTAGATAACTCGATAACGTTCAATAATATTCGAATCGTAATCACAGTGCAATACTTTA 387
* * *** * * * ** * ** ***** * * * ****
consensus_2107#0 TTGCACGTATGTACACAATTATTATACATCAACTTATATATGCGTTTGTTATAATTCTCC 534
consensus_2107#1 TCGCAGTTAAAAAAATTATAAAAATGTAC--ATTTGGACATTTGCCTGTTCCATTGCTTA 445
* *** ** * * ** * ** * * ** * ** * **** * * **
consensus_2107#0 GTGAAAGGAAATTTTTTTTCCAAACGGAACATCGTAATCAATTAATCTCGACGAAATTAA 594
consensus_2107#1 TTAAATTTTGGAAATCTTTGAAACGAGACTGACATGAAAAACTT-TTTCTACGATCTGAA 504
* ** * *** ** ** * * * ** * * ** **** * **
consensus_2107#0 TCAANGAGATACAACTATCAAATAT-GCAATATATTATGCATGAAA-GAT- 642
consensus_2107#1 ATAAAAATTTGTAAGAAAAATTTGTCGAAAGAGGGCATCACTGTATCGATT 555
** * * ** * * * * * ** * ** ** * ***
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |