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Apis mellifera
cluster # 2132 cluster # 2132       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2132#0 length = 579 sequences # 1  
 consensus_2132#1 length = 527 sequences # 1  
consensusID : consensus_2132#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence 
                              [CAGTGCTTTAGAAATGCGTTCATACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTATTTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGCATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAGATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCTGCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATTTATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGTACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGGACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCTGGAAATATTAACCATAAAATATTACTTTTTTCCGCGTAAATATAGTTTTAATTTGCATATTTTAACGAAACTGAAAAATATTTGTAAAAACAAATAAAATTGTATGAATTTAATTTATAAAA]

[+] EMBL BI504028             [CAGTGCTTTAGAAATGCGTTCATACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTATTTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGCATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAGATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCTGCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATTTATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGTACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGGACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCTGGAAATATTAACCATAAAATATTACTTTTTTCCGCGTAAATATAGTTTTAATTTGCATATTTTAACGAAACTGAAAAATATTTGTAAAAACAAATAAAATTGTATGAATTTAATTTATAAAA]




>consensus_2132#0
CAGTGCTTTAGAAATGCGTTCATACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTAT
TTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGC
ATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAG
ATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCT
GCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATT
TATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGT
ACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGG
ACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCTGGAAATATTAACCATAAAATATT
ACTTTTTTCCGCGTAAATATAGTTTTAATTTGCATATTTTAACGAAACTGAAAAATATTT
GTAAAAACAAATAAAATTGTATGAATTTAATTTATAAAA

consensusID : consensus_2132#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence 
                              [ACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTATTTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGCATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAGATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCTGCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATTTATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGTACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGGACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCTTATTACGAGGAAAGTATTGCAGATGGGCAAGAAATCTCTTCAAATAATTTTGTTAGACTCAGCACCAGACACAGGCATACAACAACTTGAACG]

[+] EMBL BI508039             [ACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTATTTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGCATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAGATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCTGCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATTTATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGTACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGGACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCTTATTACGAGGAAAGTATTGCAGATGGGCAAGAAATCTCTTCAAATAATTTTGTTAGACTCAGCACCAGACACAGGCATACAACAACTTGAACG]




>consensus_2132#1
ACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTATTTGATGTGTTTATAATACTATTC
ATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGCATTCCAAGAGCAGCAGAGTATGT
TTTATGATATAGATATTTCAAAATCATATATATAAAGATGATTCAGAAGATTTTGTCATA
AATATATATATTACTATTGCTGCTCTTAGTTTGTGCTGCAAAGATAAGGCAAATTTAGAT
TACAAAGCTAAATTACATTTTATATCTATTCCTTATTTATAAAGCAGTTGATGATCGTGA
TTATTACTATTATTATTTTATCACAAGCCAATGGTGTACGAAATACTTAAAATACTGTTT
GTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGGACGTTCAATTTGACCTTACAGTT
TACAGTTGTATTCTTATTACGAGGAAAGTATTGCAGATGGGCAAGAAATCTCTTCAAATA
ATTTTGTTAGACTCAGCACCAGACACAGGCATACAACAACTTGAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2132#0      CAGTGCTTTAGAAATGCGTTCATACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTAT 60
consensus_2132#1      -----------------------ACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTAT 37
                                             *************************************

consensus_2132#0      TTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGC 120
consensus_2132#1      TTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGC 97
                      ************************************************************

consensus_2132#0      ATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAG 180
consensus_2132#1      ATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAG 157
                      ************************************************************

consensus_2132#0      ATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCT 240
consensus_2132#1      ATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCT 217
                      ************************************************************

consensus_2132#0      GCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATT 300
consensus_2132#1      GCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATT 277
                      ************************************************************

consensus_2132#0      TATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGT 360
consensus_2132#1      TATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGT 337
                      ************************************************************

consensus_2132#0      ACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGG 420
consensus_2132#1      ACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGG 397
                      ************************************************************

consensus_2132#0      ACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCTGGAAATATTAACCATAAAATATT 480
consensus_2132#1      ACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCT-----TATTACGAGGAAAGTATT 452
                      *************************************     *****     *** ****

consensus_2132#0      ACTTTTTTCCGCGTAAATATAGTTTTAATTTGCATATTTTAACGAAACTGAAAAATATTT 540
consensus_2132#1      GC--------AGATGGGCAAGAAATCTCTTCAAATAATTTTGTTAGACTCAGCACCAGAC 504
                       *           *    *     *   **   *** ***    * *** *  *  *   

consensus_2132#0      GTAAAAACAAATAAAATTGTATGAATTTAATTTATAAAA 579
consensus_2132#1      ACAGGCATACAACAACTTGAACG---------------- 527
                        *   * * *  ** *** * *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)