These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CAGTGCTTTAGAAATGCGTTCATACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTATTTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGCATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAGATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCTGCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATTTATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGTACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGGACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCTGGAAATATTAACCATAAAATATTACTTTTTTCCGCGTAAATATAGTTTTAATTTGCATATTTTAACGAAACTGAAAAATATTTGTAAAAACAAATAAAATTGTATGAATTTAATTTATAAAA] [+] EMBL BI504028 [CAGTGCTTTAGAAATGCGTTCATACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTATTTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGCATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAGATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCTGCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATTTATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGTACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGGACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCTGGAAATATTAACCATAAAATATTACTTTTTTCCGCGTAAATATAGTTTTAATTTGCATATTTTAACGAAACTGAAAAATATTTGTAAAAACAAATAAAATTGTATGAATTTAATTTATAAAA] consensusID : consensus_2132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [ACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTATTTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGCATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAGATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCTGCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATTTATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGTACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGGACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCTTATTACGAGGAAAGTATTGCAGATGGGCAAGAAATCTCTTCAAATAATTTTGTTAGACTCAGCACCAGACACAGGCATACAACAACTTGAACG] [+] EMBL BI508039 [ACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTATTTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGCATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAGATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCTGCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATTTATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGTACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGGACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCTTATTACGAGGAAAGTATTGCAGATGGGCAAGAAATCTCTTCAAATAATTTTGTTAGACTCAGCACCAGACACAGGCATACAACAACTTGAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2132#0 CAGTGCTTTAGAAATGCGTTCATACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTAT 60 consensus_2132#1 -----------------------ACCTTTTATACGTACAAGGTTGTACAAAAAGCTTTAT 37 ************************************* consensus_2132#0 TTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGC 120 consensus_2132#1 TTGATGTGTTTATAATACTATTCATTTTGTAGGAAAATCTTTAAACACCGACTGCAGAGC 97 ************************************************************ consensus_2132#0 ATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAG 180 consensus_2132#1 ATTCCAAGAGCAGCAGAGTATGTTTTATGATATAGATATTTCAAAATCATATATATAAAG 157 ************************************************************ consensus_2132#0 ATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCT 240 consensus_2132#1 ATGATTCAGAAGATTTTGTCATAAATATATATATTACTATTGCTGCTCTTAGTTTGTGCT 217 ************************************************************ consensus_2132#0 GCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATT 300 consensus_2132#1 GCAAAGATAAGGCAAATTTAGATTACAAAGCTAAATTACATTTTATATCTATTCCTTATT 277 ************************************************************ consensus_2132#0 TATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGT 360 consensus_2132#1 TATAAAGCAGTTGATGATCGTGATTATTACTATTATTATTTTATCACAAGCCAATGGTGT 337 ************************************************************ consensus_2132#0 ACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGG 420 consensus_2132#1 ACGAAATACTTAAAATACTGTTTGTAGCTCGCGAACTGCACAAAGCGTGATACGAGTAGG 397 ************************************************************ consensus_2132#0 ACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCTGGAAATATTAACCATAAAATATT 480 consensus_2132#1 ACGTTCAATTTGACCTTACAGTTTACAGTTGTATTCT-----TATTACGAGGAAAGTATT 452 ************************************* ***** *** **** consensus_2132#0 ACTTTTTTCCGCGTAAATATAGTTTTAATTTGCATATTTTAACGAAACTGAAAAATATTT 540 consensus_2132#1 GC--------AGATGGGCAAGAAATCTCTTCAAATAATTTTGTTAGACTCAGCACCAGAC 504 * * * * ** *** *** * *** * * * consensus_2132#0 GTAAAAACAAATAAAATTGTATGAATTTAATTTATAAAA 579 consensus_2132#1 ACAGGCATACAACAACTTGAACG---------------- 527 * * * * ** *** * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |