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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2136 cluster # 2136       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2136#0 length = 465 sequences # 1  
 consensus_2136#1 length = 279 sequences # 1  
consensusID : consensus_2136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence 
                              [GAGTTCAATATATAGAAATGCCTCAACAAGGAACAGTTTTCGATGACACATGGTTATTGGTTCTAATATCTTCTTGCATCGGTGTAATTTTCATAGGCATCGTACTAGCAACATTACTCTTGAAATGCAAATTTAATAAAAGTGGTAAGAGTGGCGTAATTTCTATACCAAATGCGACATCTGGTATACAAGCAAAAAACGGAAGAATTCAAAATGAAGCTGTTCTTTACCCTTGTGGAGCTGATACTATGCAAGATAGTCGTGTTATGTGGGCTACTCTTACACCACGGGGTACTACTAGACATTATCTAGAAGAACATACTTATGAAACAATCGGCGGTGGACAATTTCATAAACGTGCCTGTTCAACTACGCCAACTGAACAGGTAAAACTTAAGACTTATGCAGATCCTCCAGTTACAACTCCGATTCAAAATCGATTAAAGGACGACAAAGCCTTTGATA]

[+] EMBL BI513672             [GAGTTCAATATATAGAAATGCCTCAACAAGGAACAGTTTTCGATGACACATGGTTATTGGTTCTAATATCTTCTTGCATCGGTGTAATTTTCATAGGCATCGTACTAGCAACATTACTCTTGAAATGCAAATTTAATAAAAGTGGTAAGAGTGGCGTAATTTCTATACCAAATGCGACATCTGGTATACAAGCAAAAAACGGAAGAATTCAAAATGAAGCTGTTCTTTACCCTTGTGGAGCTGATACTATGCAAGATAGTCGTGTTATGTGGGCTACTCTTACACCACGGGGTACTACTAGACATTATCTAGAAGAACATACTTATGAAACAATCGGCGGTGGACAATTTCATAAACGTGCCTGTTCAACTACGCCAACTGAACAGGTAAAACTTAAGACTTATGCAGATCCTCCAGTTACAACTCCGATTCAAAATCGATTAAAGGACGACAAAGCCTTTGATA]




>consensus_2136#0
GAGTTCAATATATAGAAATGCCTCAACAAGGAACAGTTTTCGATGACACATGGTTATTGG
TTCTAATATCTTCTTGCATCGGTGTAATTTTCATAGGCATCGTACTAGCAACATTACTCT
TGAAATGCAAATTTAATAAAAGTGGTAAGAGTGGCGTAATTTCTATACCAAATGCGACAT
CTGGTATACAAGCAAAAAACGGAAGAATTCAAAATGAAGCTGTTCTTTACCCTTGTGGAG
CTGATACTATGCAAGATAGTCGTGTTATGTGGGCTACTCTTACACCACGGGGTACTACTA
GACATTATCTAGAAGAACATACTTATGAAACAATCGGCGGTGGACAATTTCATAAACGTG
CCTGTTCAACTACGCCAACTGAACAGGTAAAACTTAAGACTTATGCAGATCCTCCAGTTA
CAACTCCGATTCAAAATCGATTAAAGGACGACAAAGCCTTTGATA

consensusID : consensus_2136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence 
                              [CCACCGTTCCCAGCCATTTTTCAACATAGCTCTGATTTTTATTCACACACGGATTTATTATCGTTCCCATCTCATTTCAATGACAGCCCTTGCAAACATTTTTGCGATCGCCGCTCTGAAGGAGTTCAATATATAGAAATGCCTCAACAAGGAACAGTTTTCGATGACACATGGTTATTGGTTCTAATATCTTCTTGCATCGGTGTAATTTTCATAGGCATCGTACTAGCAACATTACTCTTGAAATGCAAATTGTAAGTCTTTTTTTTCTATTTCTTT]

[+] EMBL BI504019             [CCACCGTTCCCAGCCATTTTTCAACATAGCTCTGATTTTTATTCACACACGGATTTATTATCGTTCCCATCTCATTTCAATGACAGCCCTTGCAAACATTTTTGCGATCGCCGCTCTGAAGGAGTTCAATATATAGAAATGCCTCAACAAGGAACAGTTTTCGATGACACATGGTTATTGGTTCTAATATCTTCTTGCATCGGTGTAATTTTCATAGGCATCGTACTAGCAACATTACTCTTGAAATGCAAATTGTAAGTCTTTTTTTTCTATTTCTTT]




>consensus_2136#1
CCACCGTTCCCAGCCATTTTTCAACATAGCTCTGATTTTTATTCACACACGGATTTATTA
TCGTTCCCATCTCATTTCAATGACAGCCCTTGCAAACATTTTTGCGATCGCCGCTCTGAA
GGAGTTCAATATATAGAAATGCCTCAACAAGGAACAGTTTTCGATGACACATGGTTATTG
GTTCTAATATCTTCTTGCATCGGTGTAATTTTCATAGGCATCGTACTAGCAACATTACTC
TTGAAATGCAAATTGTAAGTCTTTTTTTTCTATTTCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2136#0      GAGTTCAATATATAGAAATGCCTCAACAAGGAACAGTTTTCGATGACACATGGTTATTGG 60
consensus_2136#1      -----------------------------------------------------CCACCGT 7
                                                                             *  * 

consensus_2136#0      TTCTAAT-ATCTTCTTGCATCGGTGTAATTTTCATAGGCATCGTACTAGCAACATTACTC 119
consensus_2136#1      TCCCAGCCATTTTTCAACATAGCTCTGATTTTTAT-----TCACAC--ACGGATTTATTA 60
                      * * *   ** **    *** * * * ***** **     **  **   *    *** * 

consensus_2136#0      TTGAAATGCAAATTTAATAAAAGTGGTAAGAGTGGCGTAATTTCTATACCAAATGCGACA 179
consensus_2136#1      TCG---TTCCCATCTCATTTCAATGACAGCCCTTGCAAACATTTT--------TGCGATC 109
                      * *   * *  ** * **   * **  *    * **  *  ** *        *****  

consensus_2136#0      TCTGGTATACAAGCAAAAAACGGAAGAATTCAAAATGAAGCTGTTCTTTACCCTTGTGGA 239
consensus_2136#1      GCCGCTCT-------------GAAGGAGTTCAATATATAGAAATGCCTCAACAAGGAACA 156
                       * * * *             * * ** ***** **  **   * * * * *   *   *

consensus_2136#0      GCTGATACTATGCAAGATAGTCGTGTTATGTGGGCTACTCTTACACCA-CGGGGTACTAC 298
consensus_2136#1      GTT--TTCGATGACACATGGTTATTGGTTCTAATATCTTCTTGCATCGGTGTAATTTTCA 214
                      * *  * * ***  * ** **  *    * *    *  **** ** *   *   *  *  

consensus_2136#0      TAGACATTAT-CTAGAAGAACATACTTATGAAACAATCGGCGGTGGACAATTTCATAAAC 357
consensus_2136#1      TAGGCATCGTACTAGCAACAT-TACTCTTGAAATGCAAATTGTAAGTCTTTTTTTTCTAT 273
                      *** ***  * **** *  *  ****  *****        *   * *  ***  *  * 

consensus_2136#0      GTGCCTGTTCAACTACGCCAACTGAACAGGTAAAACTTAAGACTTATGCAGATCCTCCAG 417
consensus_2136#1      TTCTTT------------------------------------------------------ 279
                       *   *                                                      

consensus_2136#0      TTACAACTCCGATTCAAAATCGATTAAAGGACGACAAAGCCTTTGATA 465
consensus_2136#1      ------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)